Wall clock time and date at job start Tue Mar 31 2020 23:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.48309 * 2 1 4 4 C 1.53087 * 109.47863 * 239.98000 * 2 1 3 5 5 C 1.53181 * 109.16290 * 182.41296 * 4 2 1 6 6 C 1.52997 * 109.54502 * 176.84465 * 5 4 2 7 7 C 1.52997 * 109.47232 * 175.17622 * 6 5 4 8 8 N 1.46500 * 109.47473 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00376 * 179.97438 * 8 7 6 10 10 O 1.21352 * 119.99754 * 0.02562 * 9 8 7 11 11 C 1.49441 * 120.00194 * 179.97438 * 9 8 7 12 12 O 1.21352 * 120.00052 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00194 * 179.97438 * 11 9 8 14 14 C 1.46500 * 120.00376 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47473 * 180.02562 * 14 13 11 16 16 C 1.53000 * 109.47060 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46912 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99776 * 0.02562 * 17 16 15 19 19 C 1.37877 * 120.00001 * 179.97438 * 17 16 15 20 20 N 1.31512 * 119.99923 * 179.97438 * 19 17 16 21 21 Si 1.86804 * 120.00006 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.46794 * 89.99626 * 21 19 17 23 23 H 1.48502 * 109.47140 * 209.99610 * 21 19 17 24 24 H 1.48501 * 109.46982 * 329.99723 * 21 19 17 25 25 C 1.53184 * 109.10840 * 56.93269 * 5 4 2 26 26 C 1.53097 * 109.15609 * 303.15328 * 25 5 4 27 27 H 1.09007 * 109.49088 * 177.50553 * 26 25 5 28 28 C 1.52999 * 109.41003 * 297.49493 * 26 25 5 29 29 O 1.42902 * 109.47631 * 120.03968 * 2 1 3 30 30 H 1.08996 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47264 * 300.02306 * 1 2 3 32 32 H 1.09007 * 109.46828 * 60.01627 * 1 2 3 33 33 H 1.08998 * 109.52850 * 62.50770 * 4 2 1 34 34 H 1.09005 * 109.57448 * 302.34233 * 4 2 1 35 35 H 1.08996 * 109.54192 * 297.02500 * 5 4 2 36 36 H 1.09002 * 109.47045 * 55.17564 * 6 5 4 37 37 H 1.09001 * 109.47375 * 295.17489 * 6 5 4 38 38 H 1.09002 * 109.47153 * 60.00008 * 7 6 5 39 39 H 1.09001 * 109.47289 * 299.99925 * 7 6 5 40 40 H 0.97003 * 119.99983 * 359.97438 * 8 7 6 41 41 H 0.97004 * 120.00228 * 0.02562 * 13 11 9 42 42 H 1.09002 * 109.47129 * 59.99747 * 14 13 11 43 43 H 1.08998 * 109.46845 * 300.00553 * 14 13 11 44 44 H 1.09002 * 109.47153 * 59.99757 * 15 14 13 45 45 H 1.09001 * 109.46832 * 299.99948 * 15 14 13 46 46 H 1.09001 * 109.47194 * 299.99650 * 16 15 14 47 47 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 48 48 H 0.97000 * 119.99684 * 179.97438 * 20 19 17 49 49 H 1.09002 * 109.52287 * 62.97232 * 25 5 4 50 50 H 1.09007 * 109.51970 * 183.15996 * 25 5 4 51 51 H 1.09002 * 109.47003 * 179.97438 * 28 26 25 52 52 H 1.09009 * 109.46922 * 299.98461 * 28 26 25 53 53 H 1.08997 * 109.47324 * 59.98334 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2496 5 6 3.5711 -0.7708 -1.2122 6 6 4.0877 -1.5592 -2.4173 7 6 5.6165 -1.5053 -2.4448 8 7 6.1112 -2.2597 -3.5990 9 6 7.4364 -2.3501 -3.8274 10 8 8.2198 -1.8070 -3.0765 11 6 7.9410 -3.1202 -5.0045 12 8 7.1575 -3.6637 -5.7551 13 7 9.2662 -3.2102 -5.2331 14 6 9.7609 -3.9646 -6.3874 15 6 11.2896 -3.9101 -6.4152 16 6 11.8062 -4.6975 -7.6210 17 6 13.3120 -4.6433 -7.6487 18 1 13.8470 -4.1018 -6.8826 19 6 14.0066 -5.2859 -8.6515 20 7 15.3206 -5.2381 -8.6760 21 14 13.0812 -6.2231 -9.9762 22 1 12.7803 -5.3114 -11.1090 23 1 13.9160 -7.3528 -10.4582 24 1 11.8117 -6.7503 -9.4143 25 6 4.0194 -1.4590 0.0808 26 6 3.4306 -0.7096 1.2790 27 1 3.7098 -1.2206 2.2005 28 6 3.9760 0.7197 1.3027 29 8 2.0065 -0.6744 1.1663 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5142 0.8898 32 1 -0.3633 0.5136 -0.8902 33 1 1.7149 -0.1840 -2.1399 34 1 1.6443 -1.7373 -1.2723 35 1 3.9690 0.2435 -1.2423 36 1 3.6922 -1.1221 -3.3342 37 1 3.7621 -2.5966 -2.3396 38 1 6.0120 -1.9424 -1.5279 39 1 5.9421 -0.4680 -2.5226 40 1 5.4849 -2.6942 -4.1990 41 1 9.8925 -2.7754 -4.6333 42 1 9.3646 -3.5276 -7.3040 43 1 9.4360 -5.0021 -6.3096 44 1 11.6855 -4.3474 -5.4985 45 1 11.6148 -2.8726 -6.4928 46 1 11.4810 -5.7350 -7.5439 47 1 11.4103 -4.2599 -8.5374 48 1 15.8093 -5.6905 -9.3812 49 1 3.6643 -2.4895 0.0870 50 1 5.1077 -1.4474 0.1411 51 1 3.5571 1.2543 2.1552 52 1 5.0624 0.6927 1.3887 53 1 3.6972 1.2304 0.3810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117306244.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:38 Heat of formation + Delta-G solvation = -176.523484 kcal Electronic energy + Delta-G solvation = -28804.672778 eV Core-core repulsion = 24674.055887 eV Total energy + Delta-G solvation = -4130.616891 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.74427 -40.97739 -39.69818 -37.42804 -37.01772 -35.36160 -34.89528 -34.25037 -33.29715 -31.54296 -29.68580 -29.12871 -27.60400 -26.37587 -24.69767 -23.64681 -23.35608 -22.28319 -21.98912 -21.14928 -20.24810 -19.52956 -18.84881 -18.00774 -17.42375 -17.19384 -17.03945 -16.62516 -16.45806 -16.37512 -16.10292 -15.90493 -15.55607 -15.33481 -14.98603 -14.77748 -14.68320 -14.36133 -13.85192 -13.81512 -13.63296 -13.52132 -13.31990 -13.07739 -12.90038 -12.85483 -12.79170 -12.73508 -12.69468 -12.58478 -12.37893 -11.94990 -11.90750 -11.78267 -11.74018 -11.60671 -11.33616 -11.33008 -10.92191 -10.75373 -10.73938 -10.36151 -10.28879 -10.24425 -8.28283 -6.32825 0.29834 1.28857 1.38637 1.40326 1.52009 2.09823 2.37686 2.61200 2.87492 3.07673 3.39767 3.58254 3.70950 3.81810 3.98858 4.01607 4.11463 4.13033 4.17139 4.25483 4.36238 4.41185 4.45033 4.47657 4.55932 4.62284 4.64762 4.74383 4.81122 4.83126 4.86176 4.92215 4.97896 4.99778 5.01704 5.05114 5.13349 5.15868 5.17740 5.22077 5.25164 5.26835 5.36539 5.46258 5.50875 5.55360 5.65150 5.89034 6.28176 6.31475 6.40418 6.68953 6.75640 6.89929 7.32104 8.88337 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.035655 B = 0.001379 C = 0.001342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.122300 B =20298.886813 C =20857.047543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.077 3.923 3 H 0.064 0.936 4 C -0.140 4.140 5 C -0.083 4.083 6 C -0.117 4.117 7 C 0.114 3.886 8 N -0.688 5.688 9 C 0.511 3.489 10 O -0.543 6.543 11 C 0.502 3.498 12 O -0.546 6.546 13 N -0.689 5.689 14 C 0.124 3.876 15 C -0.105 4.105 16 C -0.011 4.011 17 C -0.534 4.534 18 H 0.034 0.966 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.950 3.050 22 H -0.267 1.267 23 H -0.286 1.286 24 H -0.244 1.244 25 C -0.147 4.147 26 C 0.083 3.917 27 H 0.101 0.899 28 C -0.184 4.184 29 O -0.397 6.397 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.420 0.580 41 H 0.418 0.582 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.025 0.975 47 H 0.024 0.976 48 H 0.266 0.734 49 H 0.067 0.933 50 H 0.080 0.920 51 H 0.058 0.942 52 H 0.074 0.926 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.634 11.994 18.823 40.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.019 3.981 3 H 0.082 0.918 4 C -0.178 4.178 5 C -0.102 4.102 6 C -0.155 4.155 7 C -0.008 4.008 8 N -0.341 5.341 9 C 0.291 3.709 10 O -0.420 6.420 11 C 0.283 3.717 12 O -0.424 6.424 13 N -0.341 5.341 14 C 0.001 3.999 15 C -0.143 4.143 16 C -0.049 4.049 17 C -0.572 4.572 18 H 0.053 0.947 19 C -0.193 4.193 20 N -0.593 5.593 21 Si 0.773 3.227 22 H -0.192 1.192 23 H -0.212 1.212 24 H -0.167 1.167 25 C -0.185 4.185 26 C 0.025 3.975 27 H 0.119 0.881 28 C -0.242 4.242 29 O -0.317 6.317 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.258 0.742 41 H 0.255 0.745 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.082 0.918 46 H 0.043 0.957 47 H 0.042 0.958 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.099 0.901 51 H 0.077 0.923 52 H 0.093 0.907 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -33.621 11.863 18.876 40.341 hybrid contribution 0.747 -0.360 -0.718 1.097 sum -32.874 11.504 18.158 39.278 Atomic orbital electron populations 1.21790 0.92692 1.02753 1.02984 1.22219 0.95357 0.95546 0.84939 0.91827 1.22239 0.94871 1.02013 0.98639 1.21132 0.95553 0.99940 0.93531 1.21784 0.92004 1.02166 0.99549 1.21701 0.95397 0.96320 0.87389 1.45788 1.05768 1.52719 1.29843 1.19989 0.84161 0.81396 0.85350 1.90770 1.56313 1.46867 1.48073 1.20295 0.83545 0.81772 0.86076 1.90746 1.55986 1.47239 1.48458 1.45907 1.06615 1.52222 1.29382 1.21552 0.94473 0.96262 0.87617 1.21525 0.92024 1.01147 0.99591 1.19458 0.93914 0.96396 0.95094 1.21487 0.92163 1.32528 1.11019 0.94741 1.26015 0.95552 0.97167 1.00531 1.70070 1.08278 1.45634 1.35282 0.85663 0.79495 0.78480 0.79051 1.19196 1.21190 1.16715 1.22318 1.01547 0.99978 0.94625 1.22241 0.80302 0.96124 0.98815 0.88083 1.22443 1.02278 0.96803 1.02647 1.87967 1.21590 1.78085 1.44029 0.92386 0.92346 0.89542 0.89466 0.91367 0.89951 0.89651 0.90405 0.90914 0.90958 0.74234 0.74469 0.90833 0.90939 0.91846 0.91818 0.95660 0.95759 0.92536 0.91412 0.90144 0.92255 0.90730 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.56 71.98 0.69 -0.49 16 2 C 0.08 0.75 2.94 30.62 0.09 0.84 16 3 H 0.06 0.57 6.34 -2.39 -0.02 0.55 16 4 C -0.14 -1.05 4.71 30.68 0.14 -0.90 16 5 C -0.08 -0.61 1.96 -10.67 -0.02 -0.63 16 6 C -0.12 -0.85 4.80 30.59 0.15 -0.70 16 7 C 0.11 1.38 5.43 86.38 0.47 1.85 16 8 N -0.69 -11.21 5.55 -464.42 -2.58 -13.79 16 9 C 0.51 11.86 7.89 87.27 0.69 12.55 16 10 O -0.54 -14.93 16.48 -3.25 -0.05 -14.98 16 11 C 0.50 13.34 7.89 87.27 0.69 14.03 16 12 O -0.55 -16.40 16.48 -3.25 -0.05 -16.46 16 13 N -0.69 -18.48 5.55 -464.42 -2.58 -21.05 16 14 C 0.12 3.70 5.67 86.38 0.49 4.19 16 15 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16 16 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 17 C -0.53 -30.22 9.66 25.60 0.25 -29.97 16 18 H 0.03 2.14 7.99 -2.91 -0.02 2.12 16 19 C 0.00 0.24 5.47 84.65 0.46 0.70 16 20 N -0.95 -59.51 13.96 21.45 0.30 -59.21 16 21 Si 0.95 43.66 27.47 68.60 1.88 45.54 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 24 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 25 C -0.15 -1.35 4.60 30.69 0.14 -1.20 16 26 C 0.08 0.88 3.91 30.63 0.12 1.00 16 27 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 28 C -0.18 -1.64 8.65 71.98 0.62 -1.01 16 29 O -0.40 -5.62 10.24 -148.98 -1.53 -7.15 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.41 8.14 -2.38 -0.02 0.39 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.08 0.58 6.62 -2.39 -0.02 0.56 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.07 0.96 6.65 -2.39 -0.02 0.94 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.42 5.78 7.94 -92.71 -0.74 5.04 16 41 H 0.42 10.40 7.94 -92.71 -0.74 9.66 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 45 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 46 H 0.03 1.10 7.20 -2.39 -0.02 1.08 16 47 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 48 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.70 6.74 -2.38 -0.02 0.68 16 51 H 0.06 0.56 8.14 -2.39 -0.02 0.55 16 52 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 53 H 0.07 0.54 4.98 -2.39 -0.01 0.53 16 Total: -1.00 -70.99 417.51 0.04 -70.96 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.62 Total: 19.83 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 5.26 Total: -3.70 kcal Atomic # 7 Polarization: -89.19 SS G_CDS: -4.85 Total: -94.05 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -1.63 Total: -38.59 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.54 kcal Total: -70.99 0.04 -70.96 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306244.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.566 kcal (2) G-P(sol) polarization free energy of solvation -70.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds