Wall clock time and date at job start Tue Mar 31 2020 23:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.48768 * 2 1 4 4 C 1.53090 * 109.48120 * 120.02500 * 2 1 3 5 5 C 1.53174 * 109.16201 * 62.37561 * 4 2 1 6 6 C 1.53005 * 109.54236 * 176.84389 * 5 4 2 7 7 C 1.53003 * 109.46661 * 175.00127 * 6 5 4 8 8 N 1.46499 * 109.46671 * 180.02562 * 7 6 5 9 9 C 1.34777 * 120.00065 * 180.02562 * 8 7 6 10 10 O 1.21343 * 120.00084 * 359.97438 * 9 8 7 11 11 C 1.49454 * 120.00164 * 180.02562 * 9 8 7 12 12 O 1.21353 * 119.99759 * 359.97438 * 11 9 8 13 13 N 1.34773 * 120.00135 * 180.27489 * 11 9 8 14 14 C 1.46500 * 120.00432 * 179.72278 * 13 11 9 15 15 C 1.52991 * 109.47288 * 179.97438 * 14 13 11 16 16 C 1.53007 * 109.47258 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47437 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99569 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00010 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00269 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00194 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47302 * 89.99390 * 21 19 17 23 23 H 1.48492 * 109.47159 * 209.99656 * 21 19 17 24 24 H 1.48506 * 109.47023 * 330.00007 * 21 19 17 25 25 C 1.53180 * 109.03682 * 56.97988 * 5 4 2 26 26 C 1.53094 * 109.16283 * 303.02312 * 25 5 4 27 27 H 1.09003 * 109.47339 * 297.62314 * 26 25 5 28 28 C 1.52996 * 109.48016 * 177.59209 * 26 25 5 29 29 O 1.42896 * 109.41617 * 57.60482 * 26 25 5 30 30 H 1.08998 * 109.47037 * 299.97188 * 1 2 3 31 31 H 1.08997 * 109.47315 * 59.97835 * 1 2 3 32 32 H 1.09004 * 109.46574 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.52502 * 302.47254 * 4 2 1 34 34 H 1.09006 * 109.51914 * 182.28437 * 4 2 1 35 35 H 1.08993 * 109.54593 * 297.02728 * 5 4 2 36 36 H 1.08994 * 109.46778 * 55.00358 * 6 5 4 37 37 H 1.08992 * 109.47028 * 295.00005 * 6 5 4 38 38 H 1.08994 * 109.47336 * 60.00572 * 7 6 5 39 39 H 1.08992 * 109.47300 * 299.99712 * 7 6 5 40 40 H 0.97000 * 120.00380 * 359.97438 * 8 7 6 41 41 H 0.97001 * 120.00114 * 359.71542 * 13 11 9 42 42 H 1.09000 * 109.46865 * 300.00301 * 14 13 11 43 43 H 1.09001 * 109.46879 * 59.99699 * 14 13 11 44 44 H 1.09003 * 109.47249 * 299.99458 * 15 14 13 45 45 H 1.08993 * 109.47327 * 59.99886 * 15 14 13 46 46 H 1.09000 * 109.46830 * 300.00548 * 16 15 14 47 47 H 1.09001 * 109.46945 * 59.99964 * 16 15 14 48 48 H 0.96998 * 120.00722 * 180.02562 * 20 19 17 49 49 H 1.09010 * 109.52063 * 62.92302 * 25 5 4 50 50 H 1.08993 * 109.52482 * 183.11098 * 25 5 4 51 51 H 1.09004 * 109.47239 * 300.05153 * 28 26 25 52 52 H 1.08996 * 109.47357 * 60.05434 * 28 26 25 53 53 H 1.09005 * 109.46852 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 1.5758 -2.1812 1.2122 6 6 2.1469 -2.9313 2.4173 7 6 1.5825 -4.3531 2.4472 8 7 2.1288 -5.0711 3.6014 9 6 1.7700 -6.3497 3.8312 10 8 0.9940 -6.9061 3.0824 11 6 2.3269 -7.0821 5.0090 12 8 3.1026 -6.5255 5.7582 13 7 1.9724 -8.3624 5.2357 14 6 2.5230 -9.0823 6.3867 15 6 1.9629 -10.5057 6.4135 16 6 2.5375 -11.2573 7.6161 17 6 1.9864 -12.6597 7.6421 18 1 1.2951 -12.9825 6.8777 19 6 2.3639 -13.5302 8.6424 20 7 3.2052 -13.1370 9.5735 21 14 1.6802 -15.2683 8.6752 22 1 2.5724 -16.1659 7.8983 23 1 1.6019 -15.7430 10.0800 24 1 0.3227 -15.2777 8.0731 25 6 2.0765 -2.8322 -0.0808 26 6 1.5646 -2.0284 -1.2790 27 1 0.4751 -2.0550 -1.2957 28 6 2.1100 -2.6373 -2.5723 29 8 2.0066 -0.6742 -1.1664 30 1 -0.3633 0.5134 0.8902 31 1 -0.3634 0.5141 -0.8898 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6421 -0.2357 2.1399 34 1 3.1299 -0.6872 1.2709 35 1 0.4869 -2.2179 1.2424 36 1 1.8695 -2.4109 3.3339 37 1 3.2331 -2.9732 2.3377 38 1 1.8598 -4.8735 1.5306 39 1 0.4962 -4.3112 2.5268 40 1 2.7494 -4.6266 4.1999 41 1 1.3525 -8.8074 4.6367 42 1 3.6093 -9.1202 6.3057 43 1 2.2450 -8.5654 7.3053 44 1 0.8766 -10.4674 6.4948 45 1 2.2405 -11.0227 5.4950 46 1 3.6238 -11.2956 7.5353 47 1 2.2595 -10.7402 8.5344 48 1 3.4711 -13.7495 10.2771 49 1 3.1666 -2.8399 -0.0863 50 1 1.7038 -3.8546 -0.1420 51 1 3.1996 -2.6110 -2.5551 52 1 1.7728 -3.6702 -2.6581 53 1 1.7458 -2.0645 -3.4253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117306248.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:41 Heat of formation + Delta-G solvation = -179.021042 kcal Electronic energy + Delta-G solvation = -28781.480654 eV Core-core repulsion = 24650.755461 eV Total energy + Delta-G solvation = -4130.725194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.74600 -40.97481 -39.69798 -37.41905 -36.99457 -35.39038 -34.91908 -34.25031 -33.04303 -31.55444 -29.56048 -28.83778 -27.58352 -26.41821 -24.99245 -23.81953 -23.05488 -22.37119 -22.11977 -21.17871 -20.23945 -19.47645 -18.51263 -17.97686 -17.32462 -17.26906 -16.99971 -16.65086 -16.55699 -16.34812 -16.17736 -16.03004 -15.42032 -15.28786 -15.01619 -14.77409 -14.37355 -14.27038 -13.80424 -13.78122 -13.55242 -13.51208 -13.24716 -13.11732 -12.92374 -12.87922 -12.77601 -12.75906 -12.56830 -12.54823 -12.40328 -12.37454 -11.94767 -11.72784 -11.70107 -11.55905 -11.32140 -11.23674 -10.92870 -10.71828 -10.54554 -10.36326 -10.29103 -10.24752 -8.19248 -6.30228 0.29661 1.28265 1.42562 1.43198 1.54342 2.09591 2.41847 2.61825 2.87744 3.14768 3.39762 3.59881 3.69182 3.83817 3.95355 4.08087 4.08790 4.17838 4.18455 4.25475 4.36333 4.43629 4.49707 4.51028 4.52342 4.61307 4.65077 4.74693 4.84822 4.86343 4.90018 4.91421 4.95488 5.00278 5.10408 5.10847 5.14749 5.16821 5.20674 5.23267 5.24643 5.28209 5.36181 5.51428 5.51697 5.70797 5.84529 5.88181 6.23036 6.32072 6.40628 6.69443 6.86656 6.90046 7.39264 8.92566 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.031493 B = 0.001353 C = 0.001325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.881441 B =20691.123690 C =21132.227381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.105 0.895 4 C -0.140 4.140 5 C -0.082 4.082 6 C -0.118 4.118 7 C 0.114 3.886 8 N -0.688 5.688 9 C 0.513 3.487 10 O -0.541 6.541 11 C 0.500 3.500 12 O -0.548 6.548 13 N -0.687 5.687 14 C 0.127 3.873 15 C -0.106 4.106 16 C 0.024 3.976 17 C -0.543 4.543 18 H 0.064 0.936 19 C 0.000 4.000 20 N -0.933 5.933 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.262 1.262 25 C -0.147 4.147 26 C 0.079 3.921 27 H 0.064 0.936 28 C -0.146 4.146 29 O -0.397 6.397 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.420 0.580 41 H 0.419 0.581 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.067 0.933 46 H -0.004 1.004 47 H -0.003 1.003 48 H 0.263 0.737 49 H 0.067 0.933 50 H 0.079 0.921 51 H 0.057 0.943 52 H 0.081 0.919 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.874 29.258 -22.479 37.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.024 3.976 3 H 0.123 0.877 4 C -0.178 4.178 5 C -0.101 4.101 6 C -0.155 4.155 7 C -0.008 4.008 8 N -0.341 5.341 9 C 0.293 3.707 10 O -0.419 6.419 11 C 0.281 3.719 12 O -0.427 6.427 13 N -0.339 5.339 14 C 0.004 3.996 15 C -0.144 4.144 16 C -0.013 4.013 17 C -0.581 4.581 18 H 0.082 0.918 19 C -0.198 4.198 20 N -0.573 5.573 21 Si 0.790 3.210 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.185 4.185 26 C 0.022 3.978 27 H 0.082 0.918 28 C -0.204 4.204 29 O -0.317 6.317 30 H 0.097 0.903 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.257 0.743 41 H 0.257 0.743 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.015 0.985 47 H 0.015 0.985 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.097 0.903 51 H 0.076 0.924 52 H 0.100 0.900 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.678 29.295 -22.477 37.219 hybrid contribution -0.134 -1.133 0.654 1.315 sum -4.812 28.162 -21.823 35.951 Atomic orbital electron populations 1.22445 0.95787 1.02852 1.03105 1.22290 0.94021 0.96514 0.84781 0.87683 1.22207 1.01735 0.95133 0.98712 1.21133 1.00966 0.94553 0.93486 1.21789 1.01525 0.92649 0.99579 1.21708 0.99028 0.92707 0.87353 1.45794 1.47106 1.11300 1.29928 1.19926 0.81998 0.83542 0.85226 1.90758 1.35084 1.67894 1.48126 1.20376 0.82232 0.83156 0.86131 1.90750 1.35453 1.67842 1.48623 1.45890 1.46777 1.11766 1.29461 1.21477 0.98370 0.92368 0.87393 1.21642 1.00574 0.92329 0.99868 1.18939 0.95151 0.94285 0.92957 1.21684 1.27196 0.98289 1.10972 0.91782 1.25964 0.95390 1.03314 0.95142 1.70093 1.34804 1.37483 1.14897 0.85449 0.79140 0.79148 0.77311 1.19876 1.20942 1.18664 1.22354 1.01758 0.99930 0.94428 1.22168 0.98289 0.81821 0.95523 0.91838 1.21793 1.01725 1.01006 0.95839 1.87962 1.74248 1.25315 1.44162 0.90270 0.92375 0.91906 0.89360 0.91358 0.89904 0.89659 0.90457 0.90872 0.90886 0.74276 0.74344 0.91722 0.91709 0.91461 0.91455 0.98518 0.98489 0.92801 0.91460 0.90259 0.92398 0.89993 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 8.65 71.98 0.62 -0.81 16 2 C 0.08 0.78 3.91 30.63 0.12 0.90 16 3 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.14 -1.07 4.92 30.68 0.15 -0.91 16 5 C -0.08 -0.65 1.96 -10.67 -0.02 -0.67 16 6 C -0.12 -0.93 4.80 30.60 0.15 -0.78 16 7 C 0.11 1.45 5.44 86.38 0.47 1.92 16 8 N -0.69 -11.90 5.55 -464.43 -2.58 -14.48 16 9 C 0.51 12.45 7.89 87.27 0.69 13.13 16 10 O -0.54 -15.15 16.48 -3.23 -0.05 -15.20 16 11 C 0.50 14.25 7.89 87.27 0.69 14.94 16 12 O -0.55 -17.93 16.48 -3.26 -0.05 -17.98 16 13 N -0.69 -19.77 5.55 -464.42 -2.58 -22.34 16 14 C 0.13 4.29 5.67 86.38 0.49 4.78 16 15 C -0.11 -4.06 5.27 30.59 0.16 -3.90 16 16 C 0.02 1.24 4.97 29.85 0.15 1.39 16 17 C -0.54 -30.20 9.11 25.60 0.23 -29.96 16 18 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 19 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 20 N -0.93 -56.27 13.29 21.45 0.28 -55.99 16 21 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 25 C -0.15 -1.44 4.39 30.69 0.13 -1.30 16 26 C 0.08 0.90 2.94 30.62 0.09 0.99 16 27 H 0.06 0.67 6.34 -2.39 -0.02 0.65 16 28 C -0.15 -1.54 9.56 71.98 0.69 -0.85 16 29 O -0.40 -5.71 10.24 -148.98 -1.52 -7.24 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.50 4.98 -2.38 -0.01 0.49 16 33 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.08 0.61 6.62 -2.39 -0.02 0.59 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.07 1.00 6.66 -2.39 -0.02 0.98 16 39 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.42 6.31 7.94 -92.71 -0.74 5.57 16 41 H 0.42 10.81 7.94 -92.71 -0.74 10.08 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 46 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 47 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 48 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 49 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 50 H 0.08 0.73 6.75 -2.39 -0.02 0.72 16 51 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 52 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 53 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 Total: -1.00 -69.17 421.12 0.23 -68.94 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -0.57 Total: 19.23 kcal Atomic # 6 Polarization: -5.94 SS G_CDS: 5.27 Total: -0.67 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -4.87 Total: -92.81 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: -1.63 Total: -40.42 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -69.17 0.23 -68.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306248.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.081 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds