Wall clock time and date at job start Wed Apr 1 2020 00:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.47090 * 2 1 4 4 O 1.42901 * 109.47013 * 120.00003 * 2 1 3 5 5 C 1.42902 * 113.99640 * 150.00168 * 4 2 1 6 6 C 1.53000 * 109.46728 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46807 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99783 * 179.97438 * 7 6 5 10 10 C 1.47166 * 121.05963 * 0.02562 * 9 7 6 11 11 C 1.53286 * 108.54059 * 128.86012 * 10 9 7 12 12 H 1.09003 * 109.50868 * 292.95798 * 11 10 9 13 13 C 1.53003 * 109.55055 * 172.84041 * 11 10 9 14 14 O 1.43093 * 109.23050 * 52.88974 * 11 10 9 15 15 C 1.42069 * 114.33034 * 298.83179 * 14 11 10 16 16 C 1.54507 * 110.33829 * 298.05517 * 15 14 11 17 17 C 1.55021 * 101.52142 * 276.06209 * 16 15 14 18 18 N 1.47486 * 104.89963 * 323.62202 * 17 16 15 19 19 C 1.36936 * 125.66009 * 203.75549 * 18 17 16 20 20 H 1.08004 * 119.99642 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00613 * 0.02787 * 19 18 17 22 22 N 1.31620 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00440 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46807 * 59.99590 * 23 21 19 25 25 H 1.48494 * 109.46963 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46971 * 300.00068 * 23 21 19 27 27 C 1.47187 * 108.67410 * 24.01852 * 18 17 16 28 28 C 1.47301 * 121.06036 * 179.97438 * 9 7 6 29 29 H 1.08996 * 109.46730 * 299.99840 * 1 2 3 30 30 H 1.09000 * 109.46911 * 60.00030 * 1 2 3 31 31 H 1.09004 * 109.46775 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47252 * 240.00177 * 2 1 3 33 33 H 1.09004 * 109.46892 * 300.00155 * 3 2 1 34 34 H 1.08997 * 109.46929 * 59.99979 * 3 2 1 35 35 H 1.08995 * 109.47127 * 179.97438 * 3 2 1 36 36 H 1.08996 * 109.47170 * 59.99818 * 5 4 2 37 37 H 1.08997 * 109.47229 * 299.99764 * 5 4 2 38 38 H 1.08996 * 109.47512 * 59.99944 * 6 5 4 39 39 H 1.08999 * 109.47144 * 299.99306 * 6 5 4 40 40 H 1.08989 * 109.62567 * 9.14048 * 10 9 7 41 41 H 1.09001 * 109.62015 * 248.57292 * 10 9 7 42 42 H 1.09000 * 109.47093 * 300.22079 * 13 11 10 43 43 H 1.09001 * 109.47073 * 60.22104 * 13 11 10 44 44 H 1.08993 * 109.47141 * 180.22256 * 13 11 10 45 45 H 1.08997 * 111.01659 * 158.00471 * 16 15 14 46 46 H 1.08998 * 111.05101 * 34.13579 * 16 15 14 47 47 H 1.09003 * 110.35482 * 204.76577 * 17 16 15 48 48 H 1.09000 * 110.35770 * 82.47947 * 17 16 15 49 49 H 0.97001 * 119.99924 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.90703 * 117.86416 * 27 18 17 51 51 H 1.09002 * 109.91041 * 239.13228 * 27 18 17 52 52 H 1.09002 * 109.67499 * 109.68468 * 28 9 7 53 53 H 1.09001 * 109.67991 * 349.14554 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2661 -1.3244 0.9886 6 6 3.6755 -2.0091 2.2941 7 6 5.0036 -2.6960 2.1060 8 8 5.5674 -2.6427 1.0335 9 7 5.5654 -3.3686 3.1300 10 6 4.9021 -3.4478 4.4413 11 6 4.8401 -4.9187 4.8682 12 1 4.1723 -5.4636 4.2009 13 6 4.3179 -5.0138 6.3032 14 8 6.1522 -5.4854 4.7985 15 6 6.7268 -5.4733 3.4992 16 6 5.8741 -6.3190 2.5271 17 6 6.4163 -7.7454 2.8004 18 7 7.8597 -7.5626 3.0421 19 6 8.8243 -8.5203 2.8765 20 1 9.8586 -8.2860 3.0815 21 6 8.4731 -9.7921 2.4453 22 7 7.2127 -10.0777 2.1960 23 14 9.7892 -11.0983 2.2188 24 1 10.4788 -11.3356 3.5125 25 1 9.1592 -12.3605 1.7552 26 1 10.7758 -10.6369 1.2094 27 6 8.0902 -6.1819 3.4968 28 6 6.8623 -4.0489 2.9719 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 0.0005 36 1 4.0200 -0.5873 0.7124 37 1 3.1810 -2.0706 0.1986 38 1 2.9215 -2.7463 2.5699 39 1 3.7605 -1.2632 3.0844 40 1 3.8919 -3.0457 4.3654 41 1 5.4720 -2.8774 5.1748 42 1 4.9852 -4.4673 6.9696 43 1 3.3185 -4.5820 6.3555 44 1 4.2781 -6.0599 6.6067 45 1 6.0527 -6.0245 1.4930 46 1 4.8147 -6.2496 2.7737 47 1 6.2552 -8.3849 1.9325 48 1 5.9354 -8.1716 3.6809 49 1 6.9672 -10.9666 1.8951 50 1 8.5074 -6.1876 4.5038 51 1 8.7709 -5.6746 2.8131 52 1 7.6266 -3.5186 3.5401 53 1 7.1384 -4.0726 1.9177 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131629094.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:15 Heat of formation + Delta-G solvation = -118.315814 kcal Electronic energy + Delta-G solvation = -31354.715378 eV Core-core repulsion = 27226.622560 eV Total energy + Delta-G solvation = -4128.092817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.90352 -40.26866 -39.20595 -37.97814 -35.86282 -34.86399 -34.27703 -32.96088 -31.97697 -31.02476 -29.95955 -28.11970 -27.72083 -27.21884 -25.81470 -24.05027 -23.22701 -22.27172 -21.98239 -20.89983 -20.02057 -19.01569 -18.59712 -17.96534 -17.45807 -17.17532 -16.91414 -16.83298 -16.23097 -15.95032 -15.79021 -15.67938 -15.32408 -14.95998 -14.85280 -14.49739 -14.25552 -14.08754 -13.80304 -13.69727 -13.57709 -13.39616 -13.11346 -13.09940 -13.04682 -12.95774 -12.79781 -12.73882 -12.72706 -12.32319 -12.27175 -12.22556 -12.11958 -12.04327 -11.88865 -11.63872 -11.60166 -11.48377 -10.97205 -10.86891 -10.75578 -10.55777 -9.56910 -8.94515 -7.79856 -5.25055 1.45103 1.48493 1.49506 1.55636 1.68666 2.45567 2.60980 2.67464 3.30316 3.42767 3.54370 3.57935 3.78053 3.83700 3.90703 3.95090 3.98827 4.06109 4.13221 4.16611 4.21899 4.30390 4.35705 4.39504 4.49081 4.50946 4.59632 4.67831 4.71394 4.75623 4.77168 4.78335 4.79404 4.86536 4.92108 4.93107 4.94581 4.98474 5.05575 5.12238 5.24788 5.29240 5.34469 5.35660 5.42313 5.53566 5.72156 6.21966 6.24102 6.27575 6.34595 7.01057 7.06336 7.72631 8.37452 9.22769 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016820 B = 0.002432 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.242746 B =11508.881674 C =12198.428382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 C -0.172 4.172 4 O -0.393 6.393 5 C 0.081 3.919 6 C -0.128 4.128 7 C 0.518 3.482 8 O -0.583 6.583 9 N -0.610 5.610 10 C 0.080 3.920 11 C 0.056 3.944 12 H 0.056 0.944 13 C -0.135 4.135 14 O -0.374 6.374 15 C 0.113 3.887 16 C -0.148 4.148 17 C 0.169 3.831 18 N -0.624 5.624 19 C -0.240 4.240 20 H 0.085 0.915 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.985 3.015 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.147 3.853 28 C 0.107 3.893 29 H 0.064 0.936 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.043 0.957 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.097 0.903 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.050 0.950 45 H 0.059 0.941 46 H 0.078 0.922 47 H 0.070 0.930 48 H -0.016 1.016 49 H 0.247 0.753 50 H 0.034 0.966 51 H 0.049 0.951 52 H 0.089 0.911 53 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.209 23.361 3.079 27.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.230 4.230 4 O -0.313 6.313 5 C 0.004 3.996 6 C -0.167 4.167 7 C 0.308 3.692 8 O -0.463 6.463 9 N -0.343 5.343 10 C -0.041 4.041 11 C -0.001 4.001 12 H 0.074 0.926 13 C -0.193 4.193 14 O -0.294 6.294 15 C 0.072 3.928 16 C -0.187 4.187 17 C 0.044 3.956 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.201 1.201 27 C 0.021 3.979 28 C -0.016 4.016 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.116 0.884 42 H 0.091 0.909 43 H 0.125 0.875 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.002 0.998 49 H 0.057 0.943 50 H 0.052 0.948 51 H 0.067 0.933 52 H 0.107 0.893 53 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.899 23.127 2.795 27.127 hybrid contribution 0.914 -1.260 -0.675 1.697 sum -12.985 21.867 2.121 25.520 Atomic orbital electron populations 1.21867 0.92310 1.02781 1.03388 1.22308 0.95961 0.92837 0.87531 1.22281 1.01169 0.96172 1.03368 1.87815 1.36309 1.70293 1.36894 1.22034 0.85547 0.95511 0.96493 1.21474 0.93129 1.01855 1.00228 1.21001 0.87445 0.78119 0.82635 1.90706 1.65623 1.62744 1.27240 1.48234 1.21316 1.51872 1.12847 1.22775 1.00934 0.97041 0.83391 1.22832 0.84326 0.92924 1.00049 0.92631 1.21724 1.02474 1.02920 0.92160 1.87887 1.31841 1.82157 1.27495 1.21908 0.93763 0.93419 0.83677 1.23277 0.99449 0.97350 0.98609 1.21558 0.82778 0.92981 0.98328 1.44802 1.03945 1.08086 1.78201 1.19453 0.89006 0.90825 1.37627 0.89765 1.25708 0.98740 0.99684 1.02047 1.70065 1.16596 1.20376 1.53055 0.85050 0.77795 0.77753 0.78113 1.20293 1.21908 1.20083 1.21231 0.93539 0.85432 0.97684 1.21891 0.85970 0.91144 1.02620 0.91657 0.89576 0.92388 0.92356 0.90125 0.91638 0.93221 0.93246 0.93856 0.86090 0.85279 0.85105 0.88443 0.90900 0.87485 0.93082 0.92206 0.90376 0.91217 0.99777 0.94299 0.94821 0.93305 0.89296 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.56 71.98 0.69 -1.00 16 2 C 0.07 1.06 3.34 30.60 0.10 1.17 16 3 C -0.17 -2.17 9.53 71.98 0.69 -1.48 16 4 O -0.39 -7.28 9.99 -148.98 -1.49 -8.77 16 5 C 0.08 1.60 5.04 71.98 0.36 1.97 16 6 C -0.13 -2.12 4.44 29.85 0.13 -1.99 16 7 C 0.52 13.04 7.71 87.66 0.68 13.72 16 8 O -0.58 -19.83 15.47 -3.03 -0.05 -19.87 16 9 N -0.61 -14.80 2.91 -818.50 -2.39 -17.19 16 10 C 0.08 1.36 5.82 86.35 0.50 1.87 16 11 C 0.06 1.32 3.17 30.69 0.10 1.42 16 12 H 0.06 1.42 6.13 -2.39 -0.01 1.41 16 13 C -0.14 -2.33 9.57 71.98 0.69 -1.65 16 14 O -0.37 -12.69 9.87 -148.98 -1.47 -14.16 16 15 C 0.11 4.12 0.83 -10.23 -0.01 4.11 16 16 C -0.15 -6.07 5.91 31.80 0.19 -5.89 16 17 C 0.17 8.90 5.88 86.88 0.51 9.42 16 18 N -0.62 -33.96 3.40 -692.49 -2.36 -36.32 16 19 C -0.24 -13.98 10.28 84.03 0.86 -13.12 16 20 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 22 N -0.95 -58.67 10.10 21.65 0.22 -58.45 16 23 Si 0.99 46.85 29.55 68.60 2.03 48.87 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 27 C 0.15 6.41 6.61 86.47 0.57 6.99 16 28 C 0.11 3.25 5.16 86.06 0.44 3.69 16 29 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.06 0.90 7.79 -2.39 -0.02 0.88 16 33 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 0.70 7.87 -2.39 -0.02 0.68 16 36 H 0.05 1.04 7.83 -2.39 -0.02 1.02 16 37 H 0.04 0.98 8.04 -2.39 -0.02 0.96 16 38 H 0.12 1.61 7.67 -2.39 -0.02 1.59 16 39 H 0.13 1.47 8.01 -2.39 -0.02 1.46 16 40 H 0.13 1.25 6.05 -2.39 -0.01 1.23 16 41 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.06 2.54 7.86 -2.39 -0.02 2.52 16 46 H 0.08 2.88 5.98 -2.39 -0.01 2.87 16 47 H 0.07 4.17 5.90 -2.39 -0.01 4.16 16 48 H -0.02 -0.91 8.14 -2.39 -0.02 -0.92 16 49 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 50 H 0.03 1.49 8.06 -2.39 -0.02 1.47 16 51 H 0.05 2.03 7.79 -2.39 -0.02 2.01 16 52 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 53 H 0.08 2.91 6.89 -2.39 -0.02 2.89 16 Total: -1.00 -76.22 408.53 2.34 -73.88 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.87 Total: 16.40 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.97 Total: 15.61 kcal Atomic # 7 Polarization: -107.43 SS G_CDS: -4.52 Total: -111.95 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -3.00 Total: -42.80 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -76.22 2.34 -73.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131629094.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.439 kcal (2) G-P(sol) polarization free energy of solvation -76.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds