Wall clock time and date at job start Wed Apr 1 2020 00:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 O 1.42895 * 109.46820 * 119.99410 * 2 1 3 5 5 C 1.42901 * 114.00038 * 90.00492 * 4 2 1 6 6 C 1.52999 * 109.47464 * 179.97438 * 5 4 2 7 7 C 1.50697 * 109.47148 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00288 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99944 * 180.02562 * 7 6 5 10 10 C 1.47166 * 121.07050 * 359.97438 * 9 7 6 11 11 C 1.53281 * 108.55396 * 128.89150 * 10 9 7 12 12 H 1.09002 * 109.50723 * 292.97373 * 11 10 9 13 13 C 1.52998 * 109.51399 * 172.87570 * 11 10 9 14 14 O 1.43093 * 109.22672 * 52.89496 * 11 10 9 15 15 C 1.42064 * 114.33639 * 298.85699 * 14 11 10 16 16 C 1.54493 * 110.39075 * 182.83648 * 15 14 11 17 17 C 1.55239 * 101.44115 * 83.76437 * 16 15 14 18 18 N 1.47485 * 104.78984 * 36.64878 * 17 16 15 19 19 C 1.36945 * 125.66186 * 155.93439 * 18 17 16 20 20 H 1.07997 * 119.99756 * 179.69397 * 19 18 17 21 21 C 1.38805 * 119.99878 * 359.69302 * 19 18 17 22 22 N 1.31624 * 120.00257 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47187 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47141 * 300.00154 * 23 21 19 26 26 H 1.48498 * 109.47018 * 60.00200 * 23 21 19 27 27 C 1.47181 * 108.67779 * 335.67125 * 18 17 16 28 28 C 1.47309 * 121.06867 * 180.02562 * 9 7 6 29 29 H 1.08999 * 109.47437 * 300.00797 * 1 2 3 30 30 H 1.09000 * 109.47009 * 60.00267 * 1 2 3 31 31 H 1.08994 * 109.46968 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47100 * 239.99877 * 2 1 3 33 33 H 1.08991 * 109.46872 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47050 * 299.99708 * 3 2 1 35 35 H 1.08998 * 109.47196 * 59.99490 * 3 2 1 36 36 H 1.09000 * 109.47298 * 59.99254 * 5 4 2 37 37 H 1.09006 * 109.46884 * 299.99662 * 5 4 2 38 38 H 1.09008 * 109.47163 * 60.00101 * 6 5 4 39 39 H 1.08993 * 109.47185 * 299.99881 * 6 5 4 40 40 H 1.08996 * 109.62514 * 248.61364 * 10 9 7 41 41 H 1.09007 * 109.62071 * 8.98973 * 10 9 7 42 42 H 1.08999 * 109.46972 * 59.99368 * 13 11 10 43 43 H 1.08992 * 109.47322 * 180.02562 * 13 11 10 44 44 H 1.09001 * 109.46382 * 300.00350 * 13 11 10 45 45 H 1.08996 * 111.01355 * 201.99708 * 16 15 14 46 46 H 1.09005 * 111.00553 * 325.83010 * 16 15 14 47 47 H 1.09004 * 110.48494 * 277.79450 * 17 16 15 48 48 H 1.08996 * 110.33210 * 155.43215 * 17 16 15 49 49 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.90568 * 121.10492 * 27 18 17 51 51 H 1.08990 * 109.91304 * 242.18491 * 27 18 17 52 52 H 1.09001 * 109.68281 * 109.64594 * 28 9 7 53 53 H 1.09005 * 109.70691 * 349.11680 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2001 -2.0781 0.9888 6 6 2.7090 -2.6923 2.2944 7 6 2.9128 -4.1736 2.1068 8 8 2.6740 -4.6876 1.0345 9 7 3.3594 -4.9274 3.1308 10 6 3.6560 -4.3284 4.4419 11 6 2.9301 -5.1371 5.5230 12 1 1.8534 -5.0095 5.4115 13 6 3.3626 -4.6454 6.9058 14 8 3.2647 -6.5210 5.3805 15 6 2.8837 -7.0903 4.1359 16 6 3.2224 -8.5974 4.1071 17 6 1.9836 -9.2050 4.8185 18 7 0.8480 -8.3787 4.3684 19 6 -0.4631 -8.7728 4.3369 20 1 -1.2246 -8.0884 3.9932 21 6 -0.8134 -10.0519 4.7466 22 7 0.1146 -10.8859 5.1659 23 14 -2.6019 -10.5893 4.7043 24 1 -2.7098 -11.9891 5.1880 25 1 -3.4070 -9.6994 5.5790 26 1 -3.1107 -10.5068 3.3117 27 6 1.3569 -7.0580 3.9647 28 6 3.5675 -6.3772 2.9734 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 2.9320 -2.2466 0.1988 37 1 1.2538 -2.5433 0.7126 38 1 1.9774 -2.5238 3.0847 39 1 3.6553 -2.2271 2.5701 40 1 4.7305 -4.3571 4.6229 41 1 3.3093 -3.2951 4.4592 42 1 3.1108 -3.5902 7.0113 43 1 2.8464 -5.2211 7.6739 44 1 4.4391 -4.7749 7.0170 45 1 3.3058 -8.9597 3.0825 46 1 4.1341 -8.8037 4.6679 47 1 2.0949 -9.1391 5.9009 48 1 1.8425 -10.2419 4.5135 49 1 -0.1302 -11.7797 5.4526 50 1 1.1043 -6.8658 2.9219 51 1 0.9257 -6.2841 4.5995 52 1 4.6348 -6.5981 2.9835 53 1 3.1326 -6.7107 2.0311 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131629095.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:19 Heat of formation + Delta-G solvation = -119.156109 kcal Electronic energy + Delta-G solvation = -31518.994217 eV Core-core repulsion = 27390.864961 eV Total energy + Delta-G solvation = -4128.129255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.89699 -40.26882 -39.21874 -37.96151 -35.87076 -34.92731 -34.29886 -32.98825 -31.99011 -31.04113 -29.77572 -28.13227 -27.80374 -27.23424 -25.88029 -24.06566 -23.13601 -22.28717 -22.12997 -20.88771 -19.92715 -19.03059 -18.59435 -18.00805 -17.48960 -17.25747 -16.90484 -16.79729 -16.29163 -15.97161 -15.79248 -15.63904 -15.34431 -15.01842 -14.80584 -14.59526 -14.21378 -14.15268 -13.79888 -13.70485 -13.49630 -13.39520 -13.13123 -13.08794 -13.04304 -12.98697 -12.79726 -12.76759 -12.68510 -12.35931 -12.29676 -12.16173 -12.11584 -12.04428 -11.93858 -11.70821 -11.61912 -11.51023 -10.98687 -10.86068 -10.78719 -10.57535 -9.57841 -8.95897 -7.81981 -5.27798 1.42280 1.46051 1.46983 1.52770 1.69260 2.44770 2.58772 2.66486 3.26088 3.42068 3.54185 3.60851 3.75843 3.83561 3.88355 3.95465 3.97631 4.08186 4.10813 4.15092 4.19439 4.28921 4.36719 4.38372 4.50437 4.53704 4.59339 4.65163 4.67664 4.71227 4.75452 4.77366 4.79966 4.89750 4.90942 4.92877 4.96969 4.97259 5.02299 5.10457 5.25683 5.27645 5.33663 5.34290 5.38147 5.57799 5.75262 6.20727 6.24436 6.26460 6.32271 6.99913 7.05212 7.70523 8.35161 9.19453 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.002870 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.512871 B = 9754.645064 C =11103.245220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.393 6.393 5 C 0.082 3.918 6 C -0.128 4.128 7 C 0.516 3.484 8 O -0.583 6.583 9 N -0.613 5.613 10 C 0.082 3.918 11 C 0.056 3.944 12 H 0.045 0.955 13 C -0.133 4.133 14 O -0.370 6.370 15 C 0.110 3.890 16 C -0.118 4.118 17 C 0.161 3.839 18 N -0.622 5.622 19 C -0.248 4.248 20 H 0.073 0.927 21 C -0.062 4.062 22 N -0.945 5.945 23 Si 0.983 3.017 24 H -0.288 1.288 25 H -0.278 1.278 26 H -0.277 1.277 27 C 0.124 3.876 28 C 0.107 3.893 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.039 0.961 38 H 0.116 0.884 39 H 0.132 0.868 40 H 0.103 0.897 41 H 0.128 0.872 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.096 0.904 47 H -0.013 1.013 48 H 0.078 0.922 49 H 0.250 0.750 50 H 0.014 0.986 51 H 0.018 0.982 52 H 0.099 0.901 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 23.934 -4.491 26.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.015 3.985 3 C -0.202 4.202 4 O -0.313 6.313 5 C 0.005 3.995 6 C -0.167 4.167 7 C 0.306 3.694 8 O -0.464 6.464 9 N -0.346 5.346 10 C -0.040 4.040 11 C -0.002 4.002 12 H 0.063 0.937 13 C -0.191 4.191 14 O -0.289 6.289 15 C 0.069 3.931 16 C -0.157 4.157 17 C 0.036 3.964 18 N -0.348 5.348 19 C -0.376 4.376 20 H 0.091 0.909 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.810 3.190 24 H -0.213 1.213 25 H -0.204 1.204 26 H -0.203 1.203 27 C -0.002 4.002 28 C -0.017 4.017 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.135 0.865 39 H 0.150 0.850 40 H 0.121 0.879 41 H 0.146 0.854 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.104 0.896 46 H 0.114 0.886 47 H 0.005 0.995 48 H 0.095 0.905 49 H 0.060 0.940 50 H 0.032 0.968 51 H 0.036 0.964 52 H 0.117 0.883 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 10.403 23.503 -4.691 26.127 hybrid contribution -1.550 -0.963 -0.273 1.845 sum 8.853 22.540 -4.964 24.720 Atomic orbital electron populations 1.22308 0.95706 1.01944 1.03341 1.22307 0.94049 0.94577 0.87599 1.21855 1.01789 0.93195 1.03335 1.87814 1.86877 1.19575 1.37032 1.22029 0.99597 0.81270 0.96641 1.21470 1.06230 0.89082 0.99919 1.21008 0.75346 0.90056 0.82942 1.90703 1.52680 1.75374 1.27611 1.48288 1.65553 1.08040 1.12701 1.22763 1.02393 0.98897 0.79950 1.22785 0.98345 0.81319 0.97726 0.93748 1.21707 1.02966 1.02230 0.92180 1.87853 1.80900 1.25104 1.35061 1.22006 0.92030 0.94448 0.84602 1.22891 0.99529 0.91336 1.01904 1.21747 0.83984 0.96989 0.93633 1.44799 1.03718 1.10450 1.75867 1.19350 0.83675 0.97327 1.37291 0.90921 1.25648 1.02276 0.96436 1.01137 1.70029 1.32254 1.06928 1.50210 0.85101 0.78988 0.76951 0.77965 1.21323 1.20449 1.20339 1.21803 0.94077 0.88185 0.96129 1.22009 1.01567 0.79975 0.98103 0.91855 0.89966 0.93710 0.92015 0.91920 0.89543 0.91867 0.92908 0.94236 0.86545 0.84977 0.87900 0.85415 0.87721 0.93219 0.90360 0.89639 0.88569 0.99455 0.90455 0.94035 0.96761 0.96412 0.88329 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.66 9.53 71.98 0.69 -1.97 16 2 C 0.07 1.14 3.34 30.60 0.10 1.25 16 3 C -0.14 -1.67 9.56 71.98 0.69 -0.98 16 4 O -0.39 -7.72 9.99 -148.98 -1.49 -9.21 16 5 C 0.08 1.73 5.04 71.98 0.36 2.09 16 6 C -0.13 -2.32 4.44 29.85 0.13 -2.19 16 7 C 0.52 13.82 7.71 87.66 0.68 14.50 16 8 O -0.58 -20.75 15.47 -3.04 -0.05 -20.79 16 9 N -0.61 -15.60 2.94 -818.33 -2.41 -18.01 16 10 C 0.08 1.47 5.82 86.35 0.50 1.97 16 11 C 0.06 1.41 3.17 30.69 0.10 1.50 16 12 H 0.04 1.32 6.22 -2.39 -0.01 1.31 16 13 C -0.13 -2.42 9.57 71.98 0.69 -1.73 16 14 O -0.37 -12.54 9.90 -148.97 -1.48 -14.02 16 15 C 0.11 4.02 0.81 -10.20 -0.01 4.01 16 16 C -0.12 -4.60 6.22 31.87 0.20 -4.40 16 17 C 0.16 8.39 5.91 86.96 0.51 8.90 16 18 N -0.62 -34.40 3.40 -692.05 -2.35 -36.75 16 19 C -0.25 -14.75 10.28 84.03 0.86 -13.88 16 20 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 21 C -0.06 -3.65 5.49 84.86 0.47 -3.19 16 22 N -0.95 -57.75 10.09 21.65 0.22 -57.53 16 23 Si 0.98 47.13 29.55 68.60 2.03 49.16 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 26 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 27 C 0.12 5.66 6.32 86.48 0.55 6.21 16 28 C 0.11 3.24 5.20 86.08 0.45 3.69 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.04 0.80 7.87 -2.39 -0.02 0.78 16 32 H 0.06 0.96 7.79 -2.39 -0.02 0.94 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.05 1.15 8.04 -2.39 -0.02 1.13 16 37 H 0.04 0.97 7.83 -2.38 -0.02 0.95 16 38 H 0.12 1.83 7.67 -2.38 -0.02 1.81 16 39 H 0.13 1.62 8.00 -2.39 -0.02 1.60 16 40 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.13 1.41 6.05 -2.38 -0.01 1.40 16 42 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 3.16 8.01 -2.39 -0.02 3.14 16 46 H 0.10 3.27 8.14 -2.38 -0.02 3.25 16 47 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 48 H 0.08 4.49 5.86 -2.39 -0.01 4.48 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.01 0.70 7.62 -2.39 -0.02 0.68 16 51 H 0.02 0.84 6.01 -2.39 -0.01 0.82 16 52 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 53 H 0.08 2.86 6.84 -2.38 -0.02 2.84 16 Total: -1.00 -77.12 408.73 2.31 -74.81 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.87 Total: 16.57 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.96 Total: 15.77 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -4.54 Total: -112.29 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -3.01 Total: -44.02 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.12 2.31 -74.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131629095.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.349 kcal (2) G-P(sol) polarization free energy of solvation -77.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds