Wall clock time and date at job start Wed Apr 1 2020 00:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46922 * 2 1 4 4 O 1.42901 * 109.47212 * 120.00009 * 2 1 3 5 5 C 1.42898 * 113.99987 * 90.00458 * 4 2 1 6 6 C 1.53002 * 109.47135 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47191 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00021 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00308 * 179.97438 * 7 6 5 10 10 C 1.47171 * 121.07173 * 0.02562 * 9 7 6 11 11 C 1.53286 * 108.52899 * 231.28058 * 10 9 7 12 12 H 1.08994 * 109.55548 * 66.88952 * 11 10 9 13 13 C 1.53001 * 109.50822 * 187.01300 * 11 10 9 14 14 O 1.43112 * 109.22265 * 306.93258 * 11 10 9 15 15 C 1.41877 * 114.42268 * 60.88016 * 14 11 10 16 16 C 1.54364 * 110.74649 * 63.52461 * 15 14 11 17 17 C 1.54470 * 102.87882 * 83.65673 * 16 15 14 18 18 N 1.47083 * 107.29361 * 21.49669 * 17 16 15 19 19 C 1.36933 * 125.62991 * 180.97659 * 18 17 16 20 20 H 1.08000 * 120.00460 * 173.98250 * 19 18 17 21 21 C 1.38814 * 120.00039 * 353.97929 * 19 18 17 22 22 N 1.31619 * 119.99917 * 6.85739 * 21 19 18 23 23 Si 1.86800 * 120.00260 * 186.85905 * 21 19 18 24 24 H 1.48501 * 109.47101 * 94.98478 * 23 21 19 25 25 H 1.48500 * 109.47334 * 214.98807 * 23 21 19 26 26 H 1.48502 * 109.46874 * 334.98546 * 23 21 19 27 27 C 1.47566 * 108.73985 * 0.99802 * 18 17 16 28 28 C 1.47321 * 121.08074 * 179.97438 * 9 7 6 29 29 H 1.09004 * 109.47507 * 60.00184 * 1 2 3 30 30 H 1.09004 * 109.47176 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47524 * 299.99477 * 1 2 3 32 32 H 1.08996 * 109.47400 * 240.00047 * 2 1 3 33 33 H 1.09004 * 109.47139 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47470 * 300.00063 * 3 2 1 35 35 H 1.09005 * 109.47309 * 59.99917 * 3 2 1 36 36 H 1.08997 * 109.47738 * 59.99743 * 5 4 2 37 37 H 1.09007 * 109.47013 * 299.99715 * 5 4 2 38 38 H 1.08999 * 109.47349 * 59.99983 * 6 5 4 39 39 H 1.08996 * 109.47097 * 300.00100 * 6 5 4 40 40 H 1.09000 * 109.62568 * 111.56771 * 10 9 7 41 41 H 1.08996 * 109.62944 * 350.99136 * 10 9 7 42 42 H 1.09005 * 109.46879 * 179.74292 * 13 11 10 43 43 H 1.09001 * 109.47377 * 59.75085 * 13 11 10 44 44 H 1.08996 * 109.47649 * 299.74588 * 13 11 10 45 45 H 1.08998 * 110.73662 * 202.00544 * 16 15 14 46 46 H 1.09004 * 110.73244 * 325.31454 * 16 15 14 47 47 H 1.09004 * 109.87792 * 262.07270 * 17 16 15 48 48 H 1.08997 * 110.00384 * 140.99515 * 17 16 15 49 49 H 0.97008 * 120.00221 * 179.97438 * 22 21 19 50 50 H 1.08993 * 110.37704 * 217.85169 * 27 18 17 51 51 H 1.08996 * 110.37756 * 95.50216 * 27 18 17 52 52 H 1.09005 * 109.63438 * 11.18679 * 28 9 7 53 53 H 1.08994 * 109.81802 * 250.66274 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.2002 -2.0782 0.9886 6 6 2.7080 -2.6926 2.2945 7 6 2.9118 -4.1739 2.1068 8 8 2.6747 -4.6875 1.0340 9 7 3.3585 -4.9278 3.1307 10 6 3.6541 -4.3292 4.4423 11 6 5.0629 -4.7586 4.8674 12 1 5.7980 -4.3111 4.1986 13 6 5.3274 -4.2950 6.3012 14 8 5.1611 -6.1848 4.8003 15 6 4.9505 -6.7271 3.5062 16 6 6.0419 -6.2447 2.5270 17 6 7.2005 -7.2321 2.7891 18 7 6.6188 -8.4360 3.4020 19 6 7.3170 -9.5428 3.8050 20 1 6.8115 -10.3375 4.3335 21 6 8.6748 -9.6436 3.5343 22 7 9.3193 -8.6216 3.0123 23 14 9.5871 -11.2295 3.9107 24 1 9.6417 -12.0713 2.6885 25 1 10.9680 -10.9126 4.3556 26 1 8.8769 -11.9655 4.9873 27 6 5.1584 -8.2543 3.5104 28 6 3.5656 -6.3779 2.9737 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6765 1.9564 0.8900 36 1 2.9320 -2.2467 0.1986 37 1 1.2538 -2.5434 0.7124 38 1 1.9758 -2.5243 3.0842 39 1 3.6541 -2.2275 2.5711 40 1 2.9278 -4.6785 5.1762 41 1 3.6096 -3.2428 4.3673 42 1 6.3276 -4.6047 6.6045 43 1 4.5909 -4.7415 6.9692 44 1 5.2524 -3.2088 6.3517 45 1 5.6962 -6.3204 1.4960 46 1 6.3451 -5.2238 2.7594 47 1 7.9240 -6.7825 3.4693 48 1 7.6879 -7.4930 1.8497 49 1 10.2682 -8.6918 2.8234 50 1 4.7905 -8.6848 4.4417 51 1 4.6551 -8.7080 2.6567 52 1 3.5005 -6.6451 1.9189 53 1 2.8080 -6.9226 3.5370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131629096.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:23 Heat of formation + Delta-G solvation = -119.957444 kcal Electronic energy + Delta-G solvation = -31361.778196 eV Core-core repulsion = 27233.614192 eV Total energy + Delta-G solvation = -4128.164004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.87320 -40.25418 -39.20211 -37.96083 -35.83297 -34.85475 -34.27191 -32.95416 -31.97275 -31.05338 -29.95853 -28.11647 -27.69766 -27.19938 -25.81523 -24.05199 -23.13658 -22.26839 -22.05413 -20.91440 -19.98243 -18.97452 -18.58734 -17.94841 -17.45582 -17.16359 -16.89647 -16.76465 -16.25986 -15.94620 -15.69772 -15.64199 -15.38699 -15.09831 -14.80516 -14.51867 -14.19350 -14.05473 -13.81151 -13.67267 -13.57962 -13.38582 -13.12836 -13.09873 -13.03883 -12.99236 -12.81552 -12.76727 -12.72678 -12.31694 -12.23806 -12.11623 -12.09137 -12.00999 -11.86801 -11.72817 -11.60223 -11.51440 -10.95707 -10.85083 -10.69766 -10.55258 -9.55915 -8.92008 -7.87048 -5.21872 1.44653 1.47330 1.49379 1.56291 1.69707 2.48175 2.61835 2.68042 3.31797 3.42456 3.54577 3.58779 3.83162 3.84754 3.92214 3.93753 3.99529 4.05462 4.13735 4.17013 4.21717 4.30692 4.37430 4.39240 4.46593 4.52606 4.61528 4.68791 4.73633 4.75418 4.76939 4.78653 4.79952 4.85155 4.92412 4.93415 4.94735 4.98669 5.05344 5.11930 5.24858 5.29555 5.34631 5.35409 5.42667 5.56680 5.68463 6.15908 6.22909 6.28168 6.40289 7.01560 7.07163 7.73840 8.39384 9.24445 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020324 B = 0.002340 C = 0.002272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.343290 B =11962.752172 C =12319.487321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.071 3.929 3 C -0.147 4.147 4 O -0.394 6.394 5 C 0.082 3.918 6 C -0.129 4.129 7 C 0.519 3.481 8 O -0.582 6.582 9 N -0.610 5.610 10 C 0.082 3.918 11 C 0.057 3.943 12 H 0.053 0.947 13 C -0.136 4.136 14 O -0.371 6.371 15 C 0.110 3.890 16 C -0.149 4.149 17 C 0.198 3.802 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.953 5.953 23 Si 0.981 3.019 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.265 1.265 27 C 0.145 3.855 28 C 0.107 3.893 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.050 0.950 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.130 0.870 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.004 0.996 48 H 0.007 0.993 49 H 0.246 0.754 50 H 0.053 0.947 51 H 0.048 0.952 52 H 0.088 0.912 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.498 20.656 0.608 27.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 C -0.204 4.204 4 O -0.314 6.314 5 C 0.004 3.996 6 C -0.168 4.168 7 C 0.309 3.691 8 O -0.462 6.462 9 N -0.343 5.343 10 C -0.040 4.040 11 C 0.000 4.000 12 H 0.071 0.929 13 C -0.193 4.193 14 O -0.290 6.290 15 C 0.068 3.932 16 C -0.188 4.188 17 C 0.073 3.927 18 N -0.347 5.347 19 C -0.368 4.368 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.809 3.191 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C 0.020 3.980 28 C -0.017 4.017 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.146 0.854 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.148 0.852 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.092 0.908 47 H 0.022 0.978 48 H 0.025 0.975 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.107 0.893 53 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.363 20.300 0.389 27.376 hybrid contribution 1.114 -1.190 -0.534 1.715 sum -17.249 19.110 -0.146 25.744 Atomic orbital electron populations 1.22281 0.95149 1.02214 1.03349 1.22301 0.94426 0.94340 0.87542 1.21868 1.01593 0.93541 1.03374 1.87816 1.86948 1.19715 1.36913 1.22038 0.99783 0.81274 0.96465 1.21476 1.06022 0.89068 1.00239 1.20953 0.75638 0.89847 0.82650 1.90701 1.53043 1.75330 1.27125 1.48231 1.65257 1.08015 1.12776 1.22752 0.96627 1.01167 0.83485 1.22792 0.96133 0.81293 0.99826 0.92927 1.21715 1.02366 1.02775 0.92433 1.87878 1.92028 1.21382 1.27725 1.22080 0.92931 0.94508 0.83640 1.23159 0.97164 0.99345 0.99088 1.20766 0.91865 0.85384 0.94729 1.44715 1.01941 1.16087 1.71991 1.19475 0.91770 0.95650 1.29929 0.89732 1.25719 0.97583 1.01120 1.01747 1.70216 1.08342 1.30712 1.50890 0.85015 0.77427 0.78865 0.77769 1.21398 1.22176 1.18990 1.21541 0.85380 0.91627 0.99481 1.21880 0.95625 0.81336 1.02861 0.90128 0.93177 0.91683 0.92287 0.92400 0.89560 0.91713 0.93772 0.93197 0.85378 0.86204 0.88469 0.85205 0.93437 0.90912 0.87507 0.91433 0.90753 0.97810 0.97478 0.94459 0.92886 0.93420 0.89325 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.53 71.98 0.69 -1.43 16 2 C 0.07 1.04 3.34 30.59 0.10 1.15 16 3 C -0.15 -1.66 9.56 71.98 0.69 -0.97 16 4 O -0.39 -7.20 9.99 -148.98 -1.49 -8.68 16 5 C 0.08 1.57 5.04 71.98 0.36 1.93 16 6 C -0.13 -2.10 4.44 29.85 0.13 -1.97 16 7 C 0.52 12.66 7.71 87.66 0.68 13.33 16 8 O -0.58 -19.02 15.47 -3.04 -0.05 -19.06 16 9 N -0.61 -14.43 2.95 -818.56 -2.42 -16.85 16 10 C 0.08 1.40 5.81 86.35 0.50 1.90 16 11 C 0.06 1.39 3.20 30.69 0.10 1.49 16 12 H 0.05 1.41 6.24 -2.39 -0.01 1.39 16 13 C -0.14 -2.55 9.57 71.98 0.69 -1.86 16 14 O -0.37 -12.92 9.92 -148.95 -1.48 -14.40 16 15 C 0.11 3.92 0.84 -10.14 -0.01 3.91 16 16 C -0.15 -5.99 5.88 31.56 0.19 -5.80 16 17 C 0.20 10.44 5.39 86.77 0.47 10.91 16 18 N -0.62 -33.50 3.40 -692.73 -2.36 -35.86 16 19 C -0.24 -13.91 10.26 84.03 0.86 -13.05 16 20 H 0.08 4.67 7.84 -2.91 -0.02 4.64 16 21 C -0.07 -4.07 5.48 84.86 0.47 -3.60 16 22 N -0.95 -59.53 10.35 21.65 0.22 -59.31 16 23 Si 0.98 47.11 29.56 68.60 2.03 49.14 16 24 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 C 0.15 6.17 6.42 86.56 0.56 6.73 16 28 C 0.11 3.09 5.30 86.03 0.46 3.54 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.69 7.87 -2.39 -0.02 0.67 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.88 7.79 -2.39 -0.02 0.86 16 33 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 36 H 0.04 0.96 8.04 -2.39 -0.02 0.94 16 37 H 0.05 1.02 7.83 -2.38 -0.02 1.00 16 38 H 0.13 1.45 8.01 -2.39 -0.02 1.43 16 39 H 0.12 1.59 7.67 -2.39 -0.02 1.57 16 40 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.13 1.28 6.05 -2.39 -0.01 1.27 16 42 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 2.67 7.82 -2.39 -0.02 2.65 16 46 H 0.07 2.76 6.09 -2.39 -0.01 2.75 16 47 H 0.00 0.22 7.55 -2.39 -0.02 0.20 16 48 H 0.01 0.42 7.36 -2.39 -0.02 0.40 16 49 H 0.25 14.91 8.31 -92.70 -0.77 14.14 16 50 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 51 H 0.05 1.93 7.99 -2.39 -0.02 1.91 16 52 H 0.09 2.84 6.86 -2.38 -0.02 2.83 16 53 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -77.08 409.63 2.26 -74.82 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.87 Total: 13.99 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.92 Total: 16.21 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.55 Total: -112.01 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -3.01 Total: -42.15 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -77.08 2.26 -74.82 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131629096.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.134 kcal (2) G-P(sol) polarization free energy of solvation -77.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds