Wall clock time and date at job start Wed Apr 1 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00259 * 2 1 4 4 C 1.53000 * 109.47126 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46669 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.46669 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46807 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99783 * 179.97438 * 7 6 5 10 10 C 1.47166 * 121.05963 * 0.02562 * 9 7 6 11 11 C 1.53286 * 108.54059 * 128.86012 * 10 9 7 12 12 H 1.09003 * 109.50868 * 292.95798 * 11 10 9 13 13 C 1.53003 * 109.55055 * 172.84041 * 11 10 9 14 14 O 1.43093 * 109.23050 * 52.88974 * 11 10 9 15 15 C 1.42069 * 114.33034 * 298.83179 * 14 11 10 16 16 C 1.54507 * 110.33829 * 298.05517 * 15 14 11 17 17 C 1.55021 * 101.52142 * 276.06209 * 16 15 14 18 18 N 1.47486 * 104.89963 * 323.62202 * 17 16 15 19 19 C 1.36936 * 125.66009 * 203.75549 * 18 17 16 20 20 H 1.08004 * 119.99642 * 180.02562 * 19 18 17 21 21 C 1.38811 * 120.00613 * 0.02787 * 19 18 17 22 22 N 1.31620 * 119.99672 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00440 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46807 * 59.99590 * 23 21 19 25 25 H 1.48494 * 109.46963 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.46971 * 300.00068 * 23 21 19 27 27 C 1.47187 * 108.67410 * 24.01852 * 18 17 16 28 28 C 1.47301 * 121.06036 * 179.97438 * 9 7 6 29 29 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47150 * 300.00575 * 1 2 3 31 31 H 1.09000 * 109.46365 * 60.00553 * 1 2 3 32 32 H 1.09000 * 109.46532 * 59.99554 * 3 2 1 33 33 H 1.08997 * 109.47037 * 299.99548 * 3 2 1 34 34 H 1.08996 * 109.47512 * 59.99954 * 4 3 2 35 35 H 1.09008 * 109.46851 * 299.99373 * 4 3 2 36 36 H 1.08996 * 109.47403 * 59.99627 * 5 4 3 37 37 H 1.08997 * 109.47054 * 299.99537 * 5 4 3 38 38 H 1.08996 * 109.47512 * 59.99694 * 6 5 4 39 39 H 1.08999 * 109.47144 * 299.99055 * 6 5 4 40 40 H 1.08989 * 109.62567 * 9.14048 * 10 9 7 41 41 H 1.09001 * 109.77872 * 248.66154 * 10 9 7 42 42 H 1.09000 * 109.47093 * 300.22079 * 13 11 10 43 43 H 1.09001 * 109.47073 * 60.22104 * 13 11 10 44 44 H 1.08993 * 109.47141 * 180.22256 * 13 11 10 45 45 H 1.08997 * 111.01659 * 158.00471 * 16 15 14 46 46 H 1.08998 * 111.05101 * 34.13579 * 16 15 14 47 47 H 1.09003 * 110.35482 * 204.76577 * 17 16 15 48 48 H 1.09000 * 110.35770 * 82.47947 * 17 16 15 49 49 H 0.97001 * 119.99924 * 180.02562 * 22 21 19 50 50 H 1.08998 * 109.90703 * 117.86416 * 27 18 17 51 51 H 1.09002 * 109.91041 * 239.13228 * 27 18 17 52 52 H 1.09002 * 109.67499 * 109.68468 * 28 9 7 53 53 H 1.09001 * 109.67991 * 349.14554 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 6 5.6830 2.4614 0.0026 7 6 6.2960 3.8382 0.0026 8 8 5.5831 4.8194 0.0021 9 7 7.6364 3.9791 0.0041 10 6 8.5233 2.8046 0.0053 11 6 9.5460 2.9650 -1.1252 12 1 9.0366 2.9105 -2.0873 13 6 10.5883 1.8486 -1.0349 14 8 10.1935 4.2348 -0.9983 15 6 9.3186 5.3501 -1.0937 16 6 8.6411 5.3839 -2.4819 17 6 9.7184 6.1015 -3.3348 18 7 10.3096 7.1066 -2.4317 19 6 10.9480 8.2534 -2.8221 20 1 11.3486 8.9278 -2.0798 21 6 11.0801 8.5492 -4.1719 22 7 10.5922 7.7271 -5.0766 23 14 11.9503 10.1140 -4.7044 24 1 13.3476 10.0988 -4.2020 25 1 11.9586 10.1956 -6.1871 26 1 11.2368 11.2912 -4.1474 27 6 10.1051 6.6691 -1.0413 28 6 8.2604 5.3134 0.0036 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 1.6886 1.8463 0.8900 33 1 1.6888 1.8463 -0.8900 34 1 3.8576 0.6435 -0.8890 35 1 3.8568 0.6438 0.8910 36 1 3.8358 3.1230 0.8912 37 1 3.8366 3.1234 -0.8887 38 1 6.0054 1.9206 -0.8871 39 1 6.0039 1.9206 0.8929 40 1 7.9352 1.9017 -0.1584 41 1 9.0423 2.7353 0.9613 42 1 11.0960 1.9026 -0.0718 43 1 10.0944 0.8818 -1.1316 44 1 11.3170 1.9662 -1.8368 45 1 7.7174 5.9618 -2.4521 46 1 8.4570 4.3755 -2.8524 47 1 9.2587 6.5885 -4.1949 48 1 10.4783 5.3917 -3.6614 49 1 10.6848 7.9336 -6.0198 50 1 11.0684 6.5079 -0.5575 51 1 9.5339 7.4204 -0.4959 52 1 8.7278 5.5003 0.9704 53 1 7.5030 6.0727 -0.1914 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131642636.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:43 Heat of formation + Delta-G solvation = -122.991173 kcal Electronic energy + Delta-G solvation = -31011.946746 eV Core-core repulsion = 26883.651190 eV Total energy + Delta-G solvation = -4128.295556 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.85672 -40.14460 -38.91010 -37.96886 -35.83806 -35.73783 -34.76610 -32.94359 -31.39681 -30.90598 -29.86328 -27.86211 -27.46483 -26.95015 -25.69335 -24.26998 -23.21640 -22.15330 -21.97640 -20.86941 -19.98575 -19.01445 -18.17479 -17.93676 -17.36231 -17.23049 -16.95286 -16.87871 -16.63636 -16.02831 -15.88967 -15.77164 -15.42863 -15.27756 -14.96015 -14.60080 -14.35047 -14.08953 -13.82917 -13.58326 -13.55394 -13.48388 -13.09706 -12.99847 -12.91927 -12.83529 -12.73888 -12.60818 -12.42141 -12.29230 -12.23454 -12.22163 -12.03873 -11.88822 -11.86496 -11.61003 -11.57819 -11.46939 -10.92907 -10.79070 -10.73710 -10.61562 -9.52573 -8.94517 -7.79936 -5.25101 1.44979 1.49342 1.55463 1.59644 1.84199 2.45626 2.62473 2.81636 3.30168 3.42538 3.55996 3.59043 3.79722 3.87851 3.92359 3.97008 3.98663 4.09708 4.22918 4.30054 4.34224 4.36015 4.39965 4.46983 4.49392 4.53295 4.55343 4.60939 4.70475 4.72023 4.75066 4.78161 4.82131 4.83263 4.86548 4.87616 4.94843 4.99971 5.06570 5.13200 5.28529 5.30191 5.36421 5.41115 5.42742 5.53549 5.72098 6.22646 6.24016 6.34188 6.37104 7.06240 7.12320 7.72496 8.37433 9.22641 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002268 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.792983 B =12345.227696 C =13162.723440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.129 4.129 7 C 0.509 3.491 8 O -0.586 6.586 9 N -0.614 5.614 10 C 0.081 3.919 11 C 0.056 3.944 12 H 0.056 0.944 13 C -0.135 4.135 14 O -0.376 6.376 15 C 0.114 3.886 16 C -0.147 4.147 17 C 0.168 3.832 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.070 4.070 22 N -0.951 5.951 23 Si 0.986 3.014 24 H -0.277 1.277 25 H -0.293 1.293 26 H -0.275 1.275 27 C 0.146 3.854 28 C 0.107 3.893 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.108 0.892 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.078 0.922 47 H 0.070 0.930 48 H -0.015 1.015 49 H 0.247 0.753 50 H 0.033 0.967 51 H 0.048 0.952 52 H 0.086 0.914 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.413 -20.292 13.581 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.022 4.022 4 C -0.146 4.146 5 C -0.136 4.136 6 C -0.169 4.169 7 C 0.299 3.701 8 O -0.466 6.466 9 N -0.347 5.347 10 C -0.040 4.040 11 C -0.002 4.002 12 H 0.073 0.927 13 C -0.193 4.193 14 O -0.295 6.295 15 C 0.073 3.927 16 C -0.186 4.186 17 C 0.042 3.958 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.203 1.203 25 H -0.219 1.219 26 H -0.201 1.201 27 C 0.021 3.979 28 C -0.017 4.017 29 H 0.116 0.884 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.126 0.874 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.003 0.997 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.066 0.934 52 H 0.104 0.896 53 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.432 -19.824 13.449 27.465 hybrid contribution 0.216 1.521 -0.855 1.758 sum -13.216 -18.303 12.595 25.851 Atomic orbital electron populations 1.22914 0.79763 1.03796 1.00668 1.87813 1.21266 1.28878 1.95591 1.22634 0.94736 0.84222 1.00568 1.21434 0.92498 0.96553 1.04142 1.21162 0.93270 0.96496 1.02622 1.21747 0.96077 0.92059 1.06983 1.21544 0.81029 0.93075 0.74405 1.90692 1.61243 1.42877 1.51802 1.48318 1.05990 1.07163 1.73187 1.22735 0.92491 0.88639 1.00164 1.22846 0.95146 0.84307 0.97897 0.92650 1.21727 0.98054 0.96352 1.03147 1.87882 1.34687 1.13748 1.93227 1.21895 0.89728 0.87193 0.93889 1.23265 0.98185 1.00512 0.96625 1.21574 0.91609 0.88929 0.93642 1.44791 1.66761 1.22363 1.01040 1.19454 1.28525 0.97071 0.91898 0.89797 1.25712 1.02504 1.02287 0.95705 1.70065 1.51660 1.38349 0.99981 0.85045 0.78367 0.78770 0.76493 1.20288 1.21877 1.20115 1.21231 0.97414 0.91928 0.87334 1.21844 0.95069 0.86136 0.98667 0.88417 0.93322 0.93578 0.92893 0.93331 0.90446 0.89920 0.92017 0.92739 0.86413 0.85496 0.84844 0.88710 0.90984 0.87351 0.93187 0.92319 0.90324 0.91173 0.99738 0.94295 0.94892 0.93440 0.89628 0.90040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.08 10.70 -148.98 -1.59 -8.67 16 3 C 0.05 0.80 5.94 71.98 0.43 1.23 16 4 C -0.11 -1.36 5.58 30.60 0.17 -1.19 16 5 C -0.10 -1.54 4.50 30.60 0.14 -1.40 16 6 C -0.13 -1.78 4.07 29.85 0.12 -1.66 16 7 C 0.51 12.48 7.71 87.66 0.68 13.16 16 8 O -0.59 -19.97 15.47 -3.03 -0.05 -20.02 16 9 N -0.61 -14.75 2.91 -818.50 -2.39 -17.13 16 10 C 0.08 1.34 5.82 86.35 0.50 1.84 16 11 C 0.06 1.29 3.17 30.69 0.10 1.38 16 12 H 0.06 1.40 6.13 -2.39 -0.01 1.38 16 13 C -0.14 -2.29 9.57 71.98 0.69 -1.60 16 14 O -0.38 -12.80 9.87 -148.98 -1.47 -14.27 16 15 C 0.11 4.17 0.83 -10.23 -0.01 4.16 16 16 C -0.15 -6.06 5.91 31.80 0.19 -5.87 16 17 C 0.17 8.87 5.88 86.88 0.51 9.38 16 18 N -0.62 -34.03 3.40 -692.49 -2.36 -36.39 16 19 C -0.24 -14.05 10.28 84.03 0.86 -13.18 16 20 H 0.08 4.64 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 22 N -0.95 -58.69 10.10 21.65 0.22 -58.47 16 23 Si 0.99 46.93 29.55 68.60 2.03 48.96 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 27 C 0.15 6.46 6.61 86.47 0.57 7.03 16 28 C 0.11 3.27 5.16 86.06 0.44 3.72 16 29 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.05 1.07 8.10 -2.39 -0.02 1.05 16 38 H 0.12 1.15 7.67 -2.39 -0.02 1.13 16 39 H 0.13 0.98 8.01 -2.39 -0.02 0.96 16 40 H 0.13 1.08 6.05 -2.39 -0.01 1.07 16 41 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 2.51 7.86 -2.39 -0.02 2.49 16 46 H 0.08 2.90 5.98 -2.39 -0.01 2.88 16 47 H 0.07 4.20 5.90 -2.39 -0.01 4.19 16 48 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 50 H 0.03 1.47 8.06 -2.39 -0.02 1.45 16 51 H 0.05 2.00 7.79 -2.39 -0.02 1.98 16 52 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 53 H 0.08 2.87 6.89 -2.39 -0.02 2.85 16 Total: -1.00 -78.70 409.40 2.37 -76.33 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.87 Total: 14.77 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 7.11 Total: 14.89 kcal Atomic # 7 Polarization: -107.47 SS G_CDS: -4.52 Total: -111.99 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -3.11 Total: -42.96 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -78.70 2.37 -76.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131642636.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.659 kcal (2) G-P(sol) polarization free energy of solvation -78.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds