Wall clock time and date at job start Wed Apr 1 2020 00:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00202 * 2 1 4 4 C 1.53001 * 109.47483 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.47074 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47013 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.47266 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00062 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99843 * 179.97438 * 7 6 5 10 10 C 1.47159 * 121.07839 * 0.02562 * 9 7 6 11 11 C 1.53283 * 108.53699 * 231.28120 * 10 9 7 12 12 H 1.09001 * 109.55045 * 66.88866 * 11 10 9 13 13 C 1.52997 * 109.51470 * 187.01351 * 11 10 9 14 14 O 1.43119 * 109.22036 * 306.94047 * 11 10 9 15 15 C 1.41880 * 114.42437 * 60.87534 * 14 11 10 16 16 C 1.54363 * 110.74727 * 63.52682 * 15 14 11 17 17 C 1.54457 * 102.87666 * 83.65437 * 16 15 14 18 18 N 1.47075 * 107.29916 * 21.49661 * 17 16 15 19 19 C 1.36935 * 125.63452 * 180.97525 * 18 17 16 20 20 H 1.08001 * 120.00601 * 180.02562 * 19 18 17 21 21 C 1.38813 * 119.99956 * 0.02562 * 19 18 17 22 22 N 1.31621 * 119.99918 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00366 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47493 * 89.99546 * 23 21 19 25 25 H 1.48502 * 109.47414 * 209.99910 * 23 21 19 26 26 H 1.48503 * 109.47050 * 329.99744 * 23 21 19 27 27 C 1.47571 * 108.73934 * 0.99453 * 18 17 16 28 28 C 1.47324 * 121.06993 * 180.02562 * 9 7 6 29 29 H 1.09005 * 109.46784 * 60.00599 * 1 2 3 30 30 H 1.09000 * 109.47173 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47313 * 299.99804 * 1 2 3 32 32 H 1.09007 * 109.46591 * 59.99932 * 3 2 1 33 33 H 1.08995 * 109.47341 * 300.00477 * 3 2 1 34 34 H 1.09000 * 109.46698 * 60.00259 * 4 3 2 35 35 H 1.08993 * 109.47011 * 300.00153 * 4 3 2 36 36 H 1.08995 * 109.47311 * 59.99886 * 5 4 3 37 37 H 1.09006 * 109.47069 * 300.00101 * 5 4 3 38 38 H 1.09002 * 109.47692 * 59.99916 * 6 5 4 39 39 H 1.09002 * 109.47520 * 299.99929 * 6 5 4 40 40 H 1.09002 * 109.62850 * 111.56791 * 10 9 7 41 41 H 1.09006 * 109.62725 * 350.99735 * 10 9 7 42 42 H 1.09002 * 109.47153 * 179.74574 * 13 11 10 43 43 H 1.09001 * 109.46832 * 59.74765 * 13 11 10 44 44 H 1.09004 * 109.47261 * 299.74746 * 13 11 10 45 45 H 1.08999 * 110.73087 * 202.00766 * 16 15 14 46 46 H 1.09000 * 110.73151 * 325.30529 * 16 15 14 47 47 H 1.09002 * 109.88022 * 262.06408 * 17 16 15 48 48 H 1.09006 * 110.00033 * 140.99203 * 17 16 15 49 49 H 0.97000 * 120.00358 * 180.02562 * 22 21 19 50 50 H 1.08996 * 110.37784 * 217.85365 * 27 18 17 51 51 H 1.09001 * 110.37789 * 95.50429 * 27 18 17 52 52 H 1.09002 * 109.64302 * 11.17669 * 28 9 7 53 53 H 1.09006 * 109.80917 * 250.65812 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1577 2.5824 0.0013 6 6 5.6829 2.4616 0.0013 7 6 6.2959 3.8383 0.0013 8 8 5.5830 4.8195 0.0018 9 7 7.6363 3.9792 0.0018 10 6 8.5235 2.8051 0.0018 11 6 9.5422 2.9640 1.1361 12 1 9.0297 2.9106 2.0967 13 6 10.5826 1.8457 1.0491 14 8 10.1924 4.2328 1.0111 15 6 9.3212 5.3494 1.0957 16 6 8.6575 5.4209 2.4875 17 6 9.7228 6.1447 3.3401 18 7 10.5972 6.8811 2.4147 19 6 11.6807 7.6380 2.7728 20 1 12.2614 8.1425 2.0148 21 6 12.0326 7.7571 4.1103 22 7 11.3252 7.1419 5.0342 23 14 13.5101 8.7902 4.5990 24 1 13.0765 10.1890 4.8455 25 1 14.1156 8.2344 5.8359 26 1 14.5132 8.7687 3.5041 27 6 10.1139 6.6699 1.0365 28 6 8.2606 5.3136 0.0024 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 3.8574 0.6436 -0.8892 35 1 3.8567 0.6439 0.8908 36 1 3.8357 3.1231 0.8912 37 1 3.8365 3.1236 -0.8887 38 1 6.0047 1.9211 -0.8889 39 1 6.0046 1.9203 0.8910 40 1 9.0457 2.7407 -0.9528 41 1 7.9351 1.9016 0.1620 42 1 11.3092 1.9620 1.8533 43 1 11.0933 1.8986 0.0876 44 1 10.0867 0.8797 1.1444 45 1 7.7362 6.0019 2.4463 46 1 8.4669 4.4205 2.8759 47 1 10.3071 5.4151 3.9009 48 1 9.2409 6.8402 4.0273 49 1 11.5709 7.2254 5.9689 50 1 10.9549 6.5772 0.3494 51 1 9.4631 7.4898 0.7327 52 1 7.5036 6.0722 0.2013 53 1 8.7252 5.5045 -0.9651 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131642638.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:52 Heat of formation + Delta-G solvation = -101.335613 kcal Electronic energy + Delta-G solvation = -31028.322019 eV Core-core repulsion = 26900.965518 eV Total energy + Delta-G solvation = -4127.356501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.64358 -38.93418 -38.28808 -36.36801 -35.07201 -34.60037 -33.08617 -31.33281 -30.52926 -29.24128 -28.47162 -26.96678 -26.50184 -25.63738 -24.23142 -23.21123 -21.89365 -21.49813 -20.19583 -19.63291 -18.81874 -17.22087 -17.01225 -16.74687 -16.71105 -16.44044 -15.96263 -15.77806 -15.24930 -14.85879 -14.59413 -14.48458 -14.23254 -13.93749 -13.60742 -13.39674 -13.19763 -12.93024 -12.73513 -12.48371 -12.28310 -12.16132 -12.05392 -11.95153 -11.83699 -11.78741 -11.66033 -11.57842 -11.25820 -10.98487 -10.95870 -10.89608 -10.85097 -10.35107 -10.21049 -10.08417 -10.04859 -10.04196 -9.77011 -9.61203 -9.50206 -8.54957 -8.36874 -6.78917 -5.66362 -2.99442 2.57620 2.82561 3.38038 3.43485 3.48104 3.50244 3.86070 4.35055 4.52215 4.54653 4.57685 4.68085 4.83707 4.87964 4.90201 4.97791 4.98886 5.04355 5.06526 5.13402 5.17442 5.25500 5.29396 5.37015 5.40048 5.43329 5.48363 5.55531 5.59272 5.59800 5.60695 5.79087 5.82078 5.91700 5.93572 6.00172 6.03309 6.15374 6.18637 6.35744 6.49807 6.52273 6.56204 6.66388 6.77388 7.33019 7.58812 7.66053 7.69475 7.87130 8.11260 8.29404 9.26009 9.86011 10.51784 11.45559 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020381 B = 0.002176 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.502733 B =12863.350824 C =13256.984479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.138 4.138 7 C 0.515 3.485 8 O -0.541 6.541 9 N -0.612 5.612 10 C 0.078 3.922 11 C 0.068 3.932 12 H 0.065 0.935 13 C -0.141 4.141 14 O -0.344 6.344 15 C 0.093 3.907 16 C -0.165 4.165 17 C 0.185 3.815 18 N -0.599 5.599 19 C -0.224 4.224 20 H 0.078 0.922 21 C -0.010 4.010 22 N -0.923 5.923 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.153 3.847 28 C 0.097 3.903 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.251 0.749 50 H 0.051 0.949 51 H 0.037 0.963 52 H 0.101 0.899 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.318 -16.171 -12.042 25.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.178 4.178 7 C 0.304 3.696 8 O -0.418 6.418 9 N -0.346 5.346 10 C -0.045 4.045 11 C 0.009 3.991 12 H 0.083 0.917 13 C -0.199 4.199 14 O -0.262 6.262 15 C 0.052 3.948 16 C -0.203 4.203 17 C 0.061 3.939 18 N -0.325 5.325 19 C -0.352 4.352 20 H 0.096 0.904 21 C -0.205 4.205 22 N -0.571 5.571 23 Si 0.743 3.257 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C 0.026 3.974 28 C -0.026 4.026 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.060 0.940 49 H 0.062 0.938 50 H 0.069 0.931 51 H 0.054 0.946 52 H 0.119 0.881 53 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.276 -15.724 -11.865 24.927 hybrid contribution 0.333 0.634 0.413 0.826 sum -14.943 -15.091 -11.452 24.128 Atomic orbital electron populations 1.22738 0.81001 1.02719 1.00050 1.87857 1.19762 1.28325 1.95463 1.22565 0.94190 0.84457 1.00464 1.21529 0.93059 0.97574 1.03436 1.21242 0.92780 0.95961 1.03995 1.21669 0.96848 0.94863 1.04401 1.20661 0.81455 0.91732 0.75794 1.90697 1.60266 1.40891 1.49940 1.48216 1.05438 1.07530 1.73400 1.22541 0.93019 0.88387 1.00568 1.22447 0.93648 0.86041 0.96951 0.91706 1.21694 0.98916 0.95692 1.03592 1.87918 1.33162 1.12038 1.93123 1.22392 0.90082 0.88599 0.93733 1.23351 0.99876 1.00804 0.96297 1.21099 0.88638 0.93947 0.90245 1.44414 1.31637 1.57132 0.99342 1.19049 1.02758 1.21563 0.91835 0.90377 1.24795 0.99401 1.00630 0.95723 1.69969 1.40490 1.46724 0.99869 0.86104 0.82130 0.79654 0.77782 1.21673 1.21751 1.20699 1.21339 0.95963 0.90145 0.89985 1.22136 0.96373 0.84615 0.99470 0.94086 0.89655 0.94016 0.93103 0.93190 0.91025 0.90925 0.90811 0.90954 0.88843 0.88730 0.90484 0.89135 0.91040 0.91759 0.91284 0.91702 0.92093 0.93551 0.93953 0.93846 0.93116 0.94603 0.88070 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.40 -3.65 10.70 -35.23 -0.38 -4.02 16 3 C 0.06 0.47 5.94 37.16 0.22 0.69 16 4 C -0.12 -0.88 5.58 -26.73 -0.15 -1.03 16 5 C -0.10 -0.89 4.50 -26.73 -0.12 -1.01 16 6 C -0.14 -1.20 4.07 -27.88 -0.11 -1.31 16 7 C 0.52 6.74 7.71 -10.98 -0.08 6.66 16 8 O -0.54 -9.06 15.47 5.56 0.09 -8.98 16 9 N -0.61 -8.02 2.95 -172.69 -0.51 -8.53 16 10 C 0.08 0.82 5.81 -3.54 -0.02 0.80 16 11 C 0.07 0.90 3.20 -26.59 -0.09 0.81 16 12 H 0.07 0.92 6.24 -51.93 -0.32 0.59 16 13 C -0.14 -1.52 9.57 37.16 0.36 -1.16 16 14 O -0.34 -6.19 9.92 -35.22 -0.35 -6.54 16 15 C 0.09 1.70 0.84 -89.64 -0.08 1.62 16 16 C -0.16 -3.26 5.88 -25.25 -0.15 -3.41 16 17 C 0.19 4.66 5.39 -2.96 -0.02 4.65 16 18 N -0.60 -15.68 3.40 -170.32 -0.58 -16.26 16 19 C -0.22 -6.36 10.28 -15.06 -0.15 -6.51 16 20 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 21 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 22 N -0.92 -27.63 10.31 55.49 0.57 -27.06 16 23 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 27 C 0.15 3.23 6.42 -2.87 -0.02 3.21 16 28 C 0.10 1.49 5.30 -3.92 -0.02 1.47 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 38 H 0.09 0.62 8.01 -51.93 -0.42 0.21 16 39 H 0.09 0.70 7.67 -51.93 -0.40 0.30 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.09 0.67 6.05 -51.93 -0.31 0.35 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.26 7.82 -51.93 -0.41 0.86 16 46 H 0.06 1.13 6.09 -51.93 -0.32 0.81 16 47 H 0.05 1.30 7.38 -51.93 -0.38 0.92 16 48 H 0.04 1.18 7.49 -51.93 -0.39 0.79 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 50 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 51 H 0.04 0.73 7.99 -51.93 -0.42 0.32 16 52 H 0.10 1.68 6.85 -51.93 -0.36 1.32 16 53 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 410.41 15.07 6.18 6.18 Total: -1.00 -34.40 410.41 -9.01 -43.41 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -9.60 Total: -2.10 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: 0.59 Total: 6.42 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: -0.52 Total: -51.85 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.64 Total: -19.53 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.40 -9.01 -43.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131642638.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.923 kcal (2) G-P(sol) polarization free energy of solvation -34.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds