Wall clock time and date at job start Wed Apr 1 2020 00:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.51297 * 2 1 4 4 C 1.53283 * 109.51493 * 120.10554 * 2 1 3 5 5 N 1.47156 * 108.49852 * 172.95445 * 4 2 1 6 6 C 1.34781 * 121.06002 * 128.82492 * 5 4 2 7 7 O 1.21282 * 120.00540 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99744 * 359.97438 * 6 5 4 9 9 O 1.42897 * 109.47107 * 180.02562 * 8 6 5 10 10 C 1.42908 * 113.99976 * 179.97438 * 9 8 6 11 11 C 1.52999 * 109.46739 * 59.99721 * 10 9 8 12 12 C 1.52996 * 109.46957 * 179.97438 * 10 9 8 13 13 C 1.52994 * 109.46946 * 299.99824 * 10 9 8 14 14 C 1.47293 * 117.88810 * 308.80395 * 5 4 2 15 15 C 1.52515 * 108.62739 * 49.22869 * 14 5 4 16 16 C 1.54531 * 110.03770 * 187.36938 * 15 14 5 17 17 C 1.55021 * 101.52846 * 206.93171 * 16 15 14 18 18 N 1.47481 * 104.90073 * 36.37306 * 17 16 15 19 19 C 1.36939 * 125.66620 * 155.98030 * 18 17 16 20 20 H 1.07997 * 120.00254 * 180.02562 * 19 18 17 21 21 C 1.38814 * 119.99932 * 0.02562 * 19 18 17 22 22 N 1.31622 * 119.99941 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00112 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47075 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47276 * 120.00401 * 23 21 19 26 26 H 1.48505 * 109.47454 * 240.00244 * 23 21 19 27 27 C 1.47188 * 108.67199 * 335.98402 * 18 17 16 28 28 O 1.42146 * 111.09404 * 310.11692 * 15 14 5 29 29 H 1.09004 * 109.46769 * 299.89346 * 1 2 3 30 30 H 1.08999 * 109.47168 * 59.89207 * 1 2 3 31 31 H 1.08998 * 109.47276 * 179.89728 * 1 2 3 32 32 H 1.09011 * 109.63430 * 53.25233 * 4 2 1 33 33 H 1.09002 * 109.79825 * 292.75565 * 4 2 1 34 34 H 1.09007 * 109.46894 * 299.99645 * 8 6 5 35 35 H 1.09001 * 109.47736 * 59.99411 * 8 6 5 36 36 H 1.09003 * 109.47112 * 60.00405 * 11 10 9 37 37 H 1.09004 * 109.46830 * 179.97438 * 11 10 9 38 38 H 1.08998 * 109.47727 * 299.99717 * 11 10 9 39 39 H 1.09004 * 109.47222 * 60.00218 * 12 10 9 40 40 H 1.08996 * 109.47014 * 180.02562 * 12 10 9 41 41 H 1.09003 * 109.47729 * 300.00106 * 12 10 9 42 42 H 1.09004 * 109.47252 * 60.00018 * 13 10 9 43 43 H 1.09007 * 109.46781 * 179.97438 * 13 10 9 44 44 H 1.08997 * 109.47405 * 299.99856 * 13 10 9 45 45 H 1.09002 * 109.64115 * 169.02408 * 14 5 4 46 46 H 1.08999 * 109.64042 * 289.43346 * 14 5 4 47 47 H 1.08993 * 111.01319 * 324.99118 * 16 15 14 48 48 H 1.08997 * 111.01522 * 88.83421 * 16 15 14 49 49 H 1.09001 * 110.35586 * 155.23130 * 17 16 15 50 50 H 1.09003 * 110.35212 * 277.52027 * 17 16 15 51 51 H 0.96996 * 119.99965 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.90459 * 242.13554 * 27 18 17 53 53 H 1.08998 * 109.90872 * 120.87927 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0273 0.0000 4 6 2.0421 -0.7247 1.2499 5 7 3.5035 -0.8614 1.1445 6 6 4.3125 -0.4737 2.1503 7 8 5.5144 -0.5955 2.0432 8 6 3.7236 0.1114 3.4081 9 8 4.7752 0.4425 4.3171 10 6 4.3222 1.0083 5.5488 11 6 3.4063 0.0114 6.2616 12 6 5.5261 1.3212 6.4395 13 6 3.5492 2.2975 5.2638 14 6 4.0541 -1.4360 -0.0950 15 6 3.4247 -0.7200 -1.2854 16 6 3.8369 -1.4175 -2.6013 17 6 3.7437 -0.2478 -3.6144 18 7 4.2031 0.9381 -2.8677 19 6 4.7296 2.0751 -3.4203 20 1 5.0381 2.8917 -2.7845 21 6 4.8668 2.1779 -4.7978 22 7 4.4904 1.1829 -5.5728 23 14 5.5844 3.7290 -5.5517 24 1 5.9258 4.6912 -4.4735 25 1 6.8110 3.3865 -6.3156 26 1 4.5873 4.3423 -6.4656 27 6 4.0017 0.6968 -1.4297 28 8 2.0089 -0.6767 -1.1663 29 1 -0.3633 0.5122 0.8910 30 1 -0.3633 0.5155 -0.8890 31 1 -0.3634 -1.0276 -0.0018 32 1 1.5854 -1.7125 1.3134 33 1 1.7915 -0.1475 2.1400 34 1 3.1606 1.0115 3.1611 35 1 3.0585 -0.6175 3.8712 36 1 3.9571 -0.9071 6.4646 37 1 3.0611 0.4428 7.2012 38 1 2.5486 -0.2119 5.6272 39 1 6.1790 2.0313 5.9319 40 1 5.1806 1.7524 7.3791 41 1 6.0766 0.4025 6.6425 42 1 2.6915 2.0742 4.6293 43 1 3.2033 2.7288 6.2033 44 1 4.2017 3.0077 4.7560 45 1 5.1351 -1.2980 -0.1141 46 1 3.8198 -2.4995 -0.1414 47 1 4.8556 -1.7998 -2.5384 48 1 3.1379 -2.2137 -2.8573 49 1 4.3946 -0.4335 -4.4688 50 1 2.7135 -0.1128 -3.9438 51 1 4.5859 1.2549 -6.5353 52 1 3.2998 1.4263 -1.0257 53 1 4.9546 0.7647 -0.9050 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131648928.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:27 Heat of formation + Delta-G solvation = -110.517165 kcal Electronic energy + Delta-G solvation = -32144.723358 eV Core-core repulsion = 28016.968716 eV Total energy + Delta-G solvation = -4127.754643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.90937 -40.49599 -39.38333 -37.97231 -35.88591 -34.91352 -34.39729 -32.98256 -31.18118 -30.56655 -29.10219 -28.28528 -28.08169 -27.63811 -26.94529 -25.13679 -23.15017 -22.15833 -21.27923 -20.87820 -20.05307 -19.03910 -18.49695 -18.07251 -17.41655 -17.14462 -17.01926 -16.85516 -16.17162 -15.83617 -15.77036 -15.47394 -15.32134 -15.01406 -14.77468 -14.44998 -14.25487 -14.12961 -14.02885 -13.72675 -13.50168 -13.15065 -13.12483 -13.04529 -12.98213 -12.86598 -12.83023 -12.75995 -12.67887 -12.65572 -12.31052 -12.23723 -12.14452 -11.99467 -11.95863 -11.72918 -11.62111 -11.45583 -10.97614 -10.79848 -10.75128 -10.60324 -9.60093 -8.96159 -7.82701 -5.28078 1.42251 1.42461 1.44280 1.54604 1.55612 2.44369 2.56823 2.75453 3.25837 3.38499 3.49455 3.59249 3.74339 3.84104 3.89072 3.92310 3.94549 4.01660 4.07553 4.10670 4.17508 4.19820 4.36743 4.42454 4.52835 4.58946 4.65129 4.66692 4.67341 4.68946 4.78201 4.80651 4.81645 4.89851 4.94566 4.94981 4.96920 5.01329 5.09956 5.16871 5.23248 5.33266 5.34583 5.38004 5.38557 5.57873 5.74904 6.10159 6.24272 6.30645 6.32500 7.01910 7.05189 7.70038 8.34689 9.19395 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012874 B = 0.003102 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.420030 B = 9023.387967 C =10003.788478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 H 0.045 0.955 4 C 0.080 3.920 5 N -0.612 5.612 6 C 0.508 3.492 7 O -0.573 6.573 8 C 0.048 3.952 9 O -0.388 6.388 10 C 0.094 3.906 11 C -0.176 4.176 12 C -0.139 4.139 13 C -0.180 4.180 14 C 0.108 3.892 15 C 0.112 3.888 16 C -0.118 4.118 17 C 0.162 3.838 18 N -0.622 5.622 19 C -0.246 4.246 20 H 0.072 0.928 21 C -0.062 4.062 22 N -0.945 5.945 23 Si 0.983 3.017 24 H -0.271 1.271 25 H -0.287 1.287 26 H -0.287 1.287 27 C 0.124 3.876 28 O -0.369 6.369 29 H 0.106 0.894 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.057 0.943 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.084 0.916 48 H 0.098 0.902 49 H 0.076 0.924 50 H -0.011 1.011 51 H 0.250 0.750 52 H 0.019 0.981 53 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.788 -4.878 25.362 27.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.002 4.002 3 H 0.063 0.937 4 C -0.041 4.041 5 N -0.347 5.347 6 C 0.298 3.702 7 O -0.451 6.451 8 C -0.031 4.031 9 O -0.308 6.308 10 C 0.055 3.945 11 C -0.233 4.233 12 C -0.196 4.196 13 C -0.237 4.237 14 C -0.016 4.016 15 C 0.070 3.930 16 C -0.156 4.156 17 C 0.038 3.962 18 N -0.348 5.348 19 C -0.375 4.375 20 H 0.090 0.910 21 C -0.255 4.255 22 N -0.594 5.594 23 Si 0.810 3.190 24 H -0.195 1.195 25 H -0.214 1.214 26 H -0.214 1.214 27 C -0.002 4.002 28 O -0.288 6.288 29 H 0.125 0.875 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.144 0.856 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.076 0.924 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.068 0.932 45 H 0.096 0.904 46 H 0.119 0.881 47 H 0.102 0.898 48 H 0.116 0.884 49 H 0.094 0.906 50 H 0.007 0.993 51 H 0.060 0.940 52 H 0.037 0.963 53 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -10.026 -4.949 24.988 27.376 hybrid contribution 0.662 1.180 -0.914 1.633 sum -9.364 -3.769 24.074 26.104 Atomic orbital electron populations 1.21715 0.89573 1.04130 1.03620 1.22794 0.97375 0.95101 0.84881 0.93741 1.22805 0.77733 1.03893 0.99687 1.48230 1.08200 1.62494 1.15747 1.21061 0.86411 0.77404 0.85347 1.90707 1.16947 1.55961 1.81522 1.22309 0.91152 1.01675 0.87933 1.88090 1.32082 1.82663 1.27946 1.21890 0.95832 0.93280 0.83460 1.22428 0.99601 0.99253 1.02006 1.21803 0.96716 1.01984 0.99113 1.22462 1.00531 0.96940 1.03761 1.21989 0.99262 0.98231 0.82080 1.21999 0.81702 0.93841 0.95411 1.22864 1.01715 0.98305 0.92754 1.21685 0.96086 0.83909 0.94555 1.44803 1.72992 1.16068 1.00964 1.19417 1.33636 0.93487 0.90927 0.90977 1.25643 1.02126 1.01543 0.96177 1.70045 1.53871 1.32142 1.03347 0.84958 0.77409 0.78531 0.78083 1.19544 1.21366 1.21367 1.21798 0.96320 0.95849 0.86229 1.87843 1.19245 1.77147 1.44601 0.87539 0.93177 0.90290 0.87550 0.85566 0.88186 0.86678 0.92383 0.89305 0.90928 0.93185 0.88423 0.92537 0.91137 0.89153 0.93214 0.90405 0.88142 0.89750 0.88365 0.90565 0.99301 0.94039 0.96310 0.97042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 9.57 71.98 0.69 -1.56 16 2 C 0.06 1.37 3.17 30.69 0.10 1.47 16 3 H 0.04 1.29 6.26 -2.39 -0.01 1.28 16 4 C 0.08 1.40 5.82 86.35 0.50 1.90 16 5 N -0.61 -16.18 2.96 -818.47 -2.42 -18.60 16 6 C 0.51 15.09 7.79 87.66 0.68 15.77 16 7 O -0.57 -23.32 15.98 16.00 0.26 -23.06 16 8 C 0.05 0.96 3.99 71.24 0.28 1.24 16 9 O -0.39 -9.66 9.52 -129.94 -1.24 -10.90 16 10 C 0.09 1.49 1.14 -10.80 -0.01 1.48 16 11 C -0.18 -1.82 8.25 71.98 0.59 -1.23 16 12 C -0.14 -2.13 8.84 71.98 0.64 -1.49 16 13 C -0.18 -2.29 8.25 71.98 0.59 -1.70 16 14 C 0.11 3.38 5.19 86.07 0.45 3.82 16 15 C 0.11 4.11 0.81 -10.21 -0.01 4.10 16 16 C -0.12 -4.63 6.22 31.81 0.20 -4.43 16 17 C 0.16 8.47 5.89 86.88 0.51 8.99 16 18 N -0.62 -34.63 3.40 -692.51 -2.36 -36.99 16 19 C -0.25 -14.74 10.28 84.03 0.86 -13.87 16 20 H 0.07 4.24 7.83 -2.91 -0.02 4.21 16 21 C -0.06 -3.67 5.49 84.86 0.47 -3.20 16 22 N -0.94 -57.88 10.09 21.65 0.22 -57.66 16 23 Si 0.98 47.43 29.55 68.60 2.03 49.45 16 24 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 26 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 27 C 0.12 5.74 6.35 86.47 0.55 6.29 16 28 O -0.37 -12.41 9.90 -148.98 -1.47 -13.88 16 29 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.13 1.22 6.05 -2.39 -0.01 1.20 16 34 H 0.10 1.57 5.95 -2.38 -0.01 1.55 16 35 H 0.12 1.43 6.28 -2.39 -0.01 1.41 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.07 0.55 6.54 -2.39 -0.02 0.54 16 39 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 40 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.73 6.54 -2.39 -0.02 0.71 16 43 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.08 2.88 6.82 -2.39 -0.02 2.86 16 46 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 47 H 0.08 3.17 8.01 -2.39 -0.02 3.15 16 48 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 49 H 0.08 4.45 5.88 -2.39 -0.01 4.43 16 50 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 51 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 52 H 0.02 0.89 6.04 -2.39 -0.01 0.88 16 53 H 0.01 0.58 7.61 -2.39 -0.02 0.56 16 Total: -1.00 -82.69 401.88 2.99 -79.70 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: 0.88 Total: 14.35 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 7.09 Total: 17.59 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -4.56 Total: -113.25 kcal Atomic # 8 Polarization: -45.39 SS G_CDS: -2.46 Total: -47.85 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 2.03 Total: 49.45 kcal Total: -82.69 2.99 -79.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131648928.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.819 kcal (2) G-P(sol) polarization free energy of solvation -82.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds