Wall clock time and date at job start Wed Apr 1 2020 00:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.51454 * 2 1 4 4 C 1.53286 * 109.51292 * 239.84597 * 2 1 3 5 5 N 1.47164 * 108.52901 * 187.01241 * 4 2 1 6 6 C 1.34779 * 121.07656 * 231.55960 * 5 4 2 7 7 O 1.21279 * 119.99770 * 179.71638 * 6 5 4 8 8 C 1.50704 * 119.99675 * 359.72452 * 6 5 4 9 9 O 1.42900 * 109.46489 * 179.97438 * 8 6 5 10 10 C 1.42902 * 113.99510 * 180.02562 * 9 8 6 11 11 C 1.52999 * 109.47271 * 59.99617 * 10 9 8 12 12 C 1.53004 * 109.47196 * 180.02562 * 10 9 8 13 13 C 1.53001 * 109.47230 * 299.99593 * 10 9 8 14 14 C 1.47326 * 117.84793 * 51.29064 * 5 4 2 15 15 C 1.52359 * 108.46283 * 310.86656 * 14 5 4 16 16 C 1.54357 * 110.41149 * 286.32659 * 15 14 5 17 17 C 1.54468 * 102.87527 * 207.64378 * 16 15 14 18 18 N 1.47081 * 107.29814 * 21.49444 * 17 16 15 19 19 C 1.36940 * 125.63189 * 180.99894 * 18 17 16 20 20 H 1.07996 * 120.00167 * 180.02562 * 19 18 17 21 21 C 1.38817 * 119.99752 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99774 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99805 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.46653 * 90.00211 * 23 21 19 25 25 H 1.48497 * 109.46906 * 210.00317 * 23 21 19 26 26 H 1.48498 * 109.47283 * 330.00107 * 23 21 19 27 27 C 1.47575 * 108.73893 * 0.99310 * 18 17 16 28 28 O 1.41878 * 111.47629 * 49.88359 * 15 14 5 29 29 H 1.08993 * 109.47048 * 299.90492 * 1 2 3 30 30 H 1.09008 * 109.46749 * 59.90123 * 1 2 3 31 31 H 1.08991 * 109.47254 * 179.89472 * 1 2 3 32 32 H 1.08996 * 109.62410 * 67.29931 * 4 2 1 33 33 H 1.08999 * 109.62397 * 306.72749 * 4 2 1 34 34 H 1.09000 * 109.46915 * 299.99140 * 8 6 5 35 35 H 1.08989 * 109.47057 * 59.99796 * 8 6 5 36 36 H 1.08999 * 109.47020 * 60.00262 * 11 10 9 37 37 H 1.09009 * 109.47070 * 180.02562 * 11 10 9 38 38 H 1.08995 * 109.47257 * 300.00170 * 11 10 9 39 39 H 1.08997 * 109.46915 * 59.99673 * 12 10 9 40 40 H 1.08999 * 109.47225 * 180.02562 * 12 10 9 41 41 H 1.09003 * 109.46419 * 299.99295 * 12 10 9 42 42 H 1.09004 * 109.46913 * 60.00235 * 13 10 9 43 43 H 1.08999 * 109.47421 * 180.02562 * 13 10 9 44 44 H 1.09001 * 109.46913 * 300.00196 * 13 10 9 45 45 H 1.09001 * 109.63639 * 70.56071 * 14 5 4 46 46 H 1.08998 * 109.63453 * 190.96726 * 14 5 4 47 47 H 1.08998 * 110.73533 * 325.98744 * 16 15 14 48 48 H 1.08995 * 110.73097 * 89.30288 * 16 15 14 49 49 H 1.09008 * 109.87704 * 262.06375 * 17 16 15 50 50 H 1.09006 * 109.99961 * 140.99008 * 17 16 15 51 51 H 0.97003 * 119.99507 * 179.97438 * 22 21 19 52 52 H 1.08995 * 110.37192 * 217.86041 * 27 18 17 53 53 H 1.09000 * 110.37508 * 95.51236 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7258 -1.2493 5 7 3.5036 -0.8621 -1.1449 6 6 4.3125 -0.4682 -2.1484 7 8 5.5148 -0.5849 -2.0394 8 6 3.7230 0.1174 -3.4057 9 8 4.7748 0.4554 -4.3121 10 6 4.3213 1.0223 -5.5430 11 6 3.5419 2.3073 -5.2562 12 6 5.5253 1.3429 -6.4311 13 6 3.4111 0.0231 -6.2600 14 6 4.0543 -1.4376 0.0945 15 6 3.4214 -0.7221 1.2815 16 6 4.0047 0.6996 1.4265 17 6 3.8579 0.9792 2.9386 18 7 3.7484 -0.3221 3.6154 19 6 3.5848 -0.5097 4.9619 20 1 3.5152 -1.5099 5.3633 21 6 3.5096 0.5858 5.8112 22 7 3.5950 1.8047 5.3221 23 14 3.2871 0.3298 7.6482 24 1 4.6183 0.2305 8.2988 25 1 2.5406 1.4786 8.2212 26 1 2.5257 -0.9229 7.8849 27 6 3.8439 -1.3922 2.6036 28 8 2.0080 -0.6765 1.1670 29 1 -0.3633 0.5123 0.8908 30 1 -0.3633 0.5154 -0.8892 31 1 -0.3633 -1.0276 -0.0019 32 1 1.7908 -0.1466 -2.1378 33 1 1.5856 -1.7136 -1.3116 34 1 3.0622 -0.6135 -3.8717 35 1 3.1555 1.0141 -3.1574 36 1 4.1903 3.0192 -4.7455 37 1 3.1956 2.7395 -6.1951 38 1 2.6841 2.0785 -4.6238 39 1 6.0801 0.4272 -6.6353 40 1 5.1794 1.7757 -7.3698 41 1 6.1739 2.0547 -5.9205 42 1 2.5533 -0.2057 -5.6275 43 1 3.0656 0.4553 -7.1991 44 1 3.9664 -0.8923 -6.4643 45 1 3.8199 -2.5011 0.1402 46 1 5.1354 -1.2996 0.1136 47 1 5.0536 0.7185 1.1307 48 1 3.4253 1.4156 0.8438 49 1 2.9593 1.5687 3.1210 50 1 4.7334 1.5152 3.3053 51 1 3.5420 2.5702 5.9156 52 1 3.1647 -2.2084 2.8494 53 1 4.8683 -1.7577 2.5334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131648929.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:31 Heat of formation + Delta-G solvation = -110.669546 kcal Electronic energy + Delta-G solvation = -32034.564070 eV Core-core repulsion = 27906.802820 eV Total energy + Delta-G solvation = -4127.761250 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.89563 -40.48272 -39.36902 -37.96227 -35.84974 -34.83205 -34.37250 -32.94208 -31.24230 -30.53439 -29.25286 -28.27020 -28.08632 -27.56074 -26.77011 -25.15641 -23.14826 -22.05729 -21.28095 -20.88455 -20.13149 -18.96955 -18.47896 -18.02157 -17.33291 -17.13367 -16.99715 -16.76113 -16.16987 -15.77290 -15.75885 -15.55971 -15.22880 -15.07895 -14.76734 -14.39548 -14.19227 -14.06466 -14.02007 -13.74402 -13.59465 -13.13218 -13.11092 -13.02859 -12.98013 -12.84844 -12.82468 -12.76185 -12.72074 -12.64003 -12.25205 -12.21756 -12.06698 -12.02857 -11.86796 -11.75187 -11.61758 -11.45836 -10.93462 -10.74146 -10.71460 -10.58597 -9.57708 -8.92438 -7.85211 -5.21119 1.44102 1.45498 1.48043 1.56026 1.56784 2.48675 2.61107 2.76775 3.33045 3.40246 3.49540 3.57048 3.81882 3.86694 3.90094 3.91037 3.96631 4.01060 4.08931 4.12487 4.19931 4.21157 4.37213 4.41278 4.47401 4.60884 4.68284 4.68760 4.71337 4.74840 4.76423 4.82162 4.83235 4.84361 4.94015 4.96289 4.96536 5.04398 5.11207 5.18468 5.22262 5.34799 5.35672 5.39357 5.42221 5.56302 5.69095 6.12042 6.16298 6.33245 6.39249 7.03588 7.07824 7.74308 8.39438 9.25801 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.002620 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.400805 B =10684.309522 C =10981.358202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.057 3.943 3 H 0.052 0.948 4 C 0.080 3.920 5 N -0.609 5.609 6 C 0.511 3.489 7 O -0.571 6.571 8 C 0.047 3.953 9 O -0.387 6.387 10 C 0.094 3.906 11 C -0.179 4.179 12 C -0.139 4.139 13 C -0.177 4.177 14 C 0.107 3.893 15 C 0.111 3.889 16 C -0.150 4.150 17 C 0.199 3.801 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.954 5.954 23 Si 0.982 3.018 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.267 1.267 27 C 0.145 3.855 28 O -0.369 6.369 29 H 0.047 0.953 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.051 0.949 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.074 0.926 49 H 0.009 0.991 50 H 0.003 0.997 51 H 0.246 0.754 52 H 0.055 0.945 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.684 -3.052 -27.281 28.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.001 4.001 3 H 0.070 0.930 4 C -0.041 4.041 5 N -0.344 5.344 6 C 0.300 3.700 7 O -0.450 6.450 8 C -0.032 4.032 9 O -0.307 6.307 10 C 0.056 3.944 11 C -0.237 4.237 12 C -0.196 4.196 13 C -0.234 4.234 14 C -0.016 4.016 15 C 0.070 3.930 16 C -0.188 4.188 17 C 0.074 3.926 18 N -0.347 5.347 19 C -0.368 4.368 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.603 5.603 23 Si 0.810 3.190 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.191 1.191 27 C 0.020 3.980 28 O -0.288 6.288 29 H 0.066 0.934 30 H 0.127 0.873 31 H 0.092 0.908 32 H 0.146 0.854 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.070 0.930 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.075 0.925 45 H 0.111 0.889 46 H 0.104 0.896 47 H 0.083 0.917 48 H 0.093 0.907 49 H 0.028 0.972 50 H 0.021 0.979 51 H 0.055 0.945 52 H 0.073 0.927 53 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.995 -3.114 -26.900 27.968 hybrid contribution 0.280 0.516 1.450 1.564 sum -6.716 -2.598 -25.450 26.449 Atomic orbital electron populations 1.21718 0.90130 1.03859 1.03532 1.22809 0.97110 0.95361 0.84834 0.92956 1.22787 0.77880 1.03709 0.99748 1.48190 1.08047 1.62313 1.15846 1.20999 0.86388 0.77377 0.85198 1.90704 1.16799 1.56065 1.81389 1.22318 0.91153 1.01698 0.88030 1.88085 1.32020 1.82523 1.28076 1.21878 0.95779 0.93259 0.83485 1.22458 1.00522 0.96934 1.03746 1.21803 0.96730 1.01949 0.99136 1.22435 0.99681 0.99277 1.01988 1.21874 0.99500 0.98049 0.82171 1.22040 0.81883 0.94570 0.94556 1.23159 1.00457 0.97811 0.97387 1.20750 0.97142 0.87173 0.87570 1.44708 1.85733 1.01620 1.02638 1.19484 1.41926 0.93306 0.82084 0.89659 1.25702 1.02656 0.95053 1.02781 1.70208 1.58151 0.97580 1.34389 0.85019 0.77496 0.77071 0.79389 1.21294 1.22091 1.19130 1.21541 0.98250 0.91765 0.86489 1.87882 1.19329 1.77226 1.44364 0.93426 0.87340 0.90811 0.85383 0.88065 0.86963 0.87935 0.92990 0.89293 0.91101 0.92603 0.88529 0.93035 0.90970 0.89386 0.92464 0.88925 0.89639 0.91733 0.90746 0.97244 0.97884 0.94498 0.92666 0.93558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.57 71.98 0.69 -1.72 16 2 C 0.06 1.35 3.20 30.69 0.10 1.45 16 3 H 0.05 1.38 6.25 -2.39 -0.01 1.36 16 4 C 0.08 1.35 5.82 86.35 0.50 1.85 16 5 N -0.61 -15.06 2.95 -818.68 -2.42 -17.48 16 6 C 0.51 14.00 7.79 87.66 0.68 14.68 16 7 O -0.57 -21.65 15.98 16.01 0.26 -21.39 16 8 C 0.05 0.85 3.99 71.24 0.28 1.13 16 9 O -0.39 -8.96 9.52 -129.94 -1.24 -10.20 16 10 C 0.09 1.38 1.14 -10.79 -0.01 1.36 16 11 C -0.18 -2.01 8.25 71.98 0.59 -1.42 16 12 C -0.14 -1.95 8.84 71.98 0.64 -1.32 16 13 C -0.18 -1.69 8.25 71.98 0.59 -1.10 16 14 C 0.11 3.23 5.29 86.01 0.46 3.68 16 15 C 0.11 4.02 0.84 -10.16 -0.01 4.01 16 16 C -0.15 -6.13 5.88 31.55 0.19 -5.94 16 17 C 0.20 10.58 5.39 86.77 0.47 11.05 16 18 N -0.62 -33.64 3.40 -692.70 -2.36 -35.99 16 19 C -0.24 -13.93 10.28 84.03 0.86 -13.06 16 20 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 21 C -0.07 -4.10 5.49 84.86 0.47 -3.63 16 22 N -0.95 -59.71 10.31 21.65 0.22 -59.49 16 23 Si 0.98 47.19 29.55 68.60 2.03 49.21 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 26 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 27 C 0.15 6.22 6.42 86.55 0.56 6.78 16 28 O -0.37 -12.80 9.92 -148.95 -1.48 -14.28 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 1.10 6.05 -2.39 -0.01 1.08 16 33 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.27 6.29 -2.39 -0.02 1.26 16 35 H 0.10 1.38 5.94 -2.39 -0.01 1.37 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.62 6.54 -2.39 -0.02 0.61 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.50 6.54 -2.38 -0.02 0.48 16 43 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 46 H 0.09 2.90 6.86 -2.39 -0.02 2.89 16 47 H 0.06 2.65 7.83 -2.39 -0.02 2.63 16 48 H 0.07 2.81 6.10 -2.39 -0.01 2.80 16 49 H 0.01 0.56 7.39 -2.38 -0.02 0.54 16 50 H 0.00 0.18 7.49 -2.38 -0.02 0.16 16 51 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 52 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 53 H 0.05 1.90 7.99 -2.39 -0.02 1.88 16 Total: -1.00 -82.13 402.63 2.95 -79.18 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 0.88 Total: 12.64 kcal Atomic # 6 Polarization: 10.76 SS G_CDS: 7.05 Total: 17.81 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -4.55 Total: -112.97 kcal Atomic # 8 Polarization: -43.41 SS G_CDS: -2.46 Total: -45.87 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.21 kcal Total: -82.13 2.95 -79.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131648929.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.493 kcal (2) G-P(sol) polarization free energy of solvation -82.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds