Wall clock time and date at job start Wed Apr 1 2020 00:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.51536 * 2 1 4 4 C 1.53281 * 109.51314 * 239.89830 * 2 1 3 5 5 N 1.47162 * 108.56848 * 187.06225 * 4 2 1 6 6 C 1.34774 * 121.08778 * 231.26600 * 5 4 2 7 7 O 1.21275 * 120.00594 * 179.97438 * 6 5 4 8 8 C 1.50700 * 119.99626 * 359.97438 * 6 5 4 9 9 O 1.42901 * 109.47204 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00030 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47020 * 60.00025 * 10 9 8 12 12 C 1.52994 * 109.47056 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47015 * 300.00045 * 10 9 8 14 14 C 1.47348 * 117.83493 * 51.24397 * 5 4 2 15 15 C 1.52359 * 108.41387 * 310.83036 * 14 5 4 16 16 C 1.54355 * 110.41507 * 173.58782 * 15 14 5 17 17 C 1.54471 * 102.95812 * 152.16715 * 16 15 14 18 18 N 1.47090 * 107.29113 * 338.86651 * 17 16 15 19 19 C 1.36931 * 125.62809 * 178.88317 * 18 17 16 20 20 H 1.08002 * 120.00098 * 179.69490 * 19 18 17 21 21 C 1.38812 * 120.00429 * 359.69375 * 19 18 17 22 22 N 1.31624 * 119.99535 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00187 * 180.27849 * 21 19 18 24 24 H 1.48497 * 109.47173 * 179.72427 * 23 21 19 25 25 H 1.48506 * 109.46866 * 299.71963 * 23 21 19 26 26 H 1.48501 * 109.47438 * 59.72083 * 23 21 19 27 27 C 1.47571 * 108.73734 * 358.61975 * 18 17 16 28 28 O 1.41876 * 111.46043 * 50.04304 * 15 14 5 29 29 H 1.09004 * 109.46910 * 180.09852 * 1 2 3 30 30 H 1.09003 * 109.47201 * 300.09934 * 1 2 3 31 31 H 1.08997 * 109.47259 * 60.10253 * 1 2 3 32 32 H 1.09001 * 109.61991 * 67.34460 * 4 2 1 33 33 H 1.09000 * 109.62359 * 306.79052 * 4 2 1 34 34 H 1.09001 * 109.47006 * 299.99900 * 8 6 5 35 35 H 1.08998 * 109.47372 * 59.99673 * 8 6 5 36 36 H 1.08999 * 109.47724 * 60.00199 * 11 10 9 37 37 H 1.09003 * 109.47052 * 179.97438 * 11 10 9 38 38 H 1.09002 * 109.47186 * 299.99987 * 11 10 9 39 39 H 1.08995 * 109.47787 * 59.99641 * 12 10 9 40 40 H 1.09003 * 109.47205 * 180.02562 * 12 10 9 41 41 H 1.09005 * 109.47242 * 299.99659 * 12 10 9 42 42 H 1.08998 * 109.47642 * 59.99921 * 13 10 9 43 43 H 1.09003 * 109.46834 * 180.02562 * 13 10 9 44 44 H 1.09002 * 109.47356 * 299.99902 * 13 10 9 45 45 H 1.08995 * 109.67374 * 191.09493 * 14 5 4 46 46 H 1.08997 * 109.70018 * 70.57807 * 14 5 4 47 47 H 1.09000 * 110.72866 * 270.72153 * 16 15 14 48 48 H 1.09006 * 110.73293 * 33.84497 * 16 15 14 49 49 H 1.08994 * 109.99520 * 219.38000 * 17 16 15 50 50 H 1.08997 * 109.76859 * 98.22587 * 17 16 15 51 51 H 0.97005 * 119.99717 * 180.02562 * 22 21 19 52 52 H 1.08996 * 110.37362 * 142.38865 * 27 18 17 53 53 H 1.09005 * 110.37765 * 264.62019 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0420 -0.7246 -1.2499 5 7 3.5034 -0.8626 -1.1460 6 6 4.3124 -0.4737 -2.1513 7 8 5.5142 -0.5960 -2.0446 8 6 3.7234 0.1131 -3.4082 9 8 4.7750 0.4452 -4.3170 10 6 4.3219 1.0117 -5.5483 11 6 3.5484 2.3004 -5.2626 12 6 5.5258 1.3256 -6.4387 13 6 3.4065 0.0149 -6.2619 14 6 4.0536 -1.4393 0.0933 15 6 3.4216 -0.7224 1.2798 16 6 3.8432 -1.3962 2.6030 17 6 3.7707 -0.2365 3.6207 18 7 3.8527 1.0193 2.8592 19 6 3.8016 2.2798 3.3916 20 1 3.8756 3.1423 2.7458 21 6 3.6546 2.4493 4.7615 22 7 3.5639 1.3983 5.5486 23 14 3.5771 4.1689 5.4869 24 1 3.4122 4.0778 6.9599 25 1 4.8337 4.8955 5.1735 26 1 2.4237 4.9006 4.9040 27 6 4.0056 0.6963 1.4274 28 8 2.0080 -0.6778 1.1664 29 1 -0.3633 -1.0277 0.0018 30 1 -0.3634 0.5154 0.8891 31 1 -0.3633 0.5122 -0.8909 32 1 1.7914 -0.1442 -2.1379 33 1 1.5847 -1.7120 -1.3138 34 1 3.0582 -0.6151 -3.8722 35 1 3.1606 1.0129 -3.1600 36 1 4.2006 3.0106 -4.7542 37 1 3.2032 2.7327 -6.2017 38 1 2.6907 2.0763 -4.6283 39 1 6.0766 0.4073 -6.6422 40 1 5.1802 1.7581 -7.3777 41 1 6.1783 2.0356 -5.9306 42 1 2.5488 -0.2092 -5.6277 43 1 3.0612 0.4469 -7.2012 44 1 3.9575 -0.9033 -6.4654 45 1 5.1345 -1.3010 0.1141 46 1 3.8188 -2.5027 0.1395 47 1 3.1470 -2.1913 2.8699 48 1 4.8598 -1.7831 2.5322 49 1 4.6046 -0.3012 4.3196 50 1 2.8261 -0.2802 4.1628 51 1 3.4609 1.5167 6.5059 52 1 3.4441 1.4033 0.8169 53 1 5.0588 0.7062 1.1465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131648930.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:35 Heat of formation + Delta-G solvation = -111.219346 kcal Electronic energy + Delta-G solvation = -32214.292743 eV Core-core repulsion = 28086.507652 eV Total energy + Delta-G solvation = -4127.785091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.89105 -40.48574 -39.37375 -37.93540 -35.84964 -34.90555 -34.38811 -32.96713 -31.21006 -30.55164 -29.10302 -28.28070 -28.06685 -27.62202 -26.91222 -25.13931 -23.18521 -22.01270 -21.28282 -20.89148 -20.09988 -19.00304 -18.47327 -18.03500 -17.36149 -17.12975 -17.00385 -16.77908 -16.18416 -15.79231 -15.76462 -15.51721 -15.31504 -15.10927 -14.76453 -14.42910 -14.21052 -14.07037 -13.96261 -13.69486 -13.59176 -13.13680 -13.12367 -13.07099 -12.95193 -12.85909 -12.79433 -12.75063 -12.67891 -12.64929 -12.24452 -12.21828 -12.10602 -12.03465 -11.99226 -11.72262 -11.64956 -11.47752 -10.94875 -10.74053 -10.71557 -10.59476 -9.57694 -8.93414 -7.87710 -5.23786 1.41872 1.43861 1.46038 1.52453 1.57110 2.45993 2.61894 2.76231 3.29561 3.39847 3.49837 3.60756 3.72598 3.87820 3.89729 3.93399 3.97205 4.02709 4.08485 4.11541 4.18621 4.20719 4.37578 4.43408 4.53787 4.60350 4.65280 4.67151 4.68101 4.68775 4.78157 4.81408 4.82313 4.90397 4.94396 4.95242 4.95627 5.02489 5.11321 5.17507 5.24165 5.34002 5.34803 5.37275 5.38455 5.61513 5.72982 6.11351 6.15196 6.32390 6.36880 7.03091 7.06398 7.71948 8.37275 9.22468 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013674 B = 0.003054 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2047.264300 B = 9166.935883 C = 9765.621472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.059 3.941 3 H 0.043 0.957 4 C 0.082 3.918 5 N -0.612 5.612 6 C 0.510 3.490 7 O -0.571 6.571 8 C 0.047 3.953 9 O -0.387 6.387 10 C 0.094 3.906 11 C -0.180 4.180 12 C -0.139 4.139 13 C -0.176 4.176 14 C 0.107 3.893 15 C 0.109 3.891 16 C -0.119 4.119 17 C 0.192 3.808 18 N -0.619 5.619 19 C -0.249 4.249 20 H 0.075 0.925 21 C -0.062 4.062 22 N -0.948 5.948 23 Si 0.980 3.020 24 H -0.290 1.290 25 H -0.279 1.279 26 H -0.275 1.275 27 C 0.121 3.879 28 O -0.366 6.366 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.100 0.900 36 H 0.049 0.951 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.057 0.943 45 H 0.083 0.917 46 H 0.100 0.900 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.009 0.991 50 H 0.014 0.986 51 H 0.248 0.752 52 H 0.035 0.965 53 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.935 -5.490 -25.785 27.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.001 3.999 3 H 0.061 0.939 4 C -0.040 4.040 5 N -0.346 5.346 6 C 0.299 3.701 7 O -0.450 6.450 8 C -0.032 4.032 9 O -0.307 6.307 10 C 0.056 3.944 11 C -0.237 4.237 12 C -0.196 4.196 13 C -0.233 4.233 14 C -0.016 4.016 15 C 0.067 3.933 16 C -0.157 4.157 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.377 4.377 20 H 0.093 0.907 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.808 3.192 24 H -0.216 1.216 25 H -0.205 1.205 26 H -0.201 1.201 27 C -0.005 4.005 28 O -0.285 6.285 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.068 0.932 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.101 0.899 46 H 0.118 0.882 47 H 0.113 0.887 48 H 0.110 0.890 49 H 0.027 0.973 50 H 0.032 0.968 51 H 0.058 0.942 52 H 0.053 0.947 53 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges -7.248 -5.559 -25.387 26.980 hybrid contribution 0.376 1.236 1.072 1.679 sum -6.871 -4.323 -24.315 25.634 Atomic orbital electron populations 1.21703 0.89955 1.03997 1.03421 1.22756 0.97200 0.95040 0.84941 0.93920 1.22783 0.77890 1.03788 0.99549 1.48229 1.08099 1.62397 1.15901 1.20997 0.86403 0.77405 0.85254 1.90698 1.16811 1.55998 1.81475 1.22311 0.91179 1.01637 0.88052 1.88084 1.32043 1.82612 1.27950 1.21880 0.95824 0.93226 0.83496 1.22463 1.00541 0.96985 1.03730 1.21800 0.96699 1.01998 0.99096 1.22429 0.99616 0.99284 1.01983 1.21956 0.99477 0.98209 0.81955 1.22040 0.81981 0.94280 0.94995 1.22729 1.02112 0.98171 0.92689 1.20881 0.97759 0.83227 0.91460 1.44698 1.85881 1.02360 1.01605 1.19339 1.43233 0.83786 0.91383 0.90744 1.25658 1.02159 1.01414 0.96304 1.70183 1.57099 1.29069 1.03284 0.85135 0.78187 0.78975 0.76915 1.21588 1.20483 1.20093 1.22023 0.96488 0.95775 0.86203 1.87827 1.19254 1.76901 1.44559 0.90327 0.93568 0.87574 0.85657 0.87584 0.86774 0.88275 0.93164 0.89209 0.91199 0.92492 0.88482 0.93136 0.90984 0.89353 0.92341 0.89860 0.88154 0.88719 0.89010 0.97319 0.96776 0.94234 0.94662 0.97091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 9.57 71.98 0.69 -1.82 16 2 C 0.06 1.50 3.20 30.69 0.10 1.59 16 3 H 0.04 1.30 6.26 -2.39 -0.01 1.29 16 4 C 0.08 1.45 5.81 86.35 0.50 1.95 16 5 N -0.61 -15.80 2.96 -818.66 -2.42 -18.22 16 6 C 0.51 14.71 7.79 87.66 0.68 15.39 16 7 O -0.57 -22.45 15.99 16.02 0.26 -22.20 16 8 C 0.05 0.92 3.99 71.24 0.28 1.21 16 9 O -0.39 -9.45 9.52 -129.94 -1.24 -10.69 16 10 C 0.09 1.48 1.14 -10.80 -0.01 1.46 16 11 C -0.18 -2.29 8.25 71.98 0.59 -1.69 16 12 C -0.14 -2.08 8.84 71.98 0.64 -1.44 16 13 C -0.18 -1.81 8.25 71.98 0.59 -1.22 16 14 C 0.11 3.23 5.30 86.01 0.46 3.69 16 15 C 0.11 3.95 0.83 -10.16 -0.01 3.94 16 16 C -0.12 -4.57 6.12 31.55 0.19 -4.37 16 17 C 0.19 10.02 5.39 86.77 0.47 10.49 16 18 N -0.62 -34.13 3.40 -692.72 -2.36 -36.48 16 19 C -0.25 -14.78 10.28 84.03 0.86 -13.92 16 20 H 0.07 4.28 7.83 -2.91 -0.02 4.26 16 21 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 22 N -0.95 -58.89 10.31 21.65 0.22 -58.67 16 23 Si 0.98 47.31 29.55 68.60 2.03 49.34 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 25 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 26 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 27 C 0.12 5.49 6.18 86.56 0.53 6.02 16 28 O -0.37 -12.75 9.92 -148.95 -1.48 -14.23 16 29 H 0.08 1.26 8.14 -2.38 -0.02 1.25 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.13 1.26 6.05 -2.39 -0.01 1.25 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.11 1.40 6.28 -2.39 -0.01 1.39 16 35 H 0.10 1.55 5.95 -2.39 -0.01 1.53 16 36 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.07 0.73 6.54 -2.39 -0.02 0.72 16 39 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 0.55 6.54 -2.39 -0.02 0.54 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.08 2.87 6.86 -2.39 -0.02 2.85 16 46 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 47 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 48 H 0.09 3.17 7.99 -2.38 -0.02 3.15 16 49 H 0.01 0.50 7.52 -2.39 -0.02 0.48 16 50 H 0.01 0.82 7.37 -2.39 -0.02 0.80 16 51 H 0.25 14.94 8.31 -92.70 -0.77 14.17 16 52 H 0.04 1.60 6.09 -2.39 -0.01 1.58 16 53 H 0.01 0.55 7.82 -2.38 -0.02 0.53 16 Total: -1.00 -82.91 402.65 2.94 -79.98 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.88 Total: 13.10 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 7.04 Total: 18.07 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.55 Total: -113.37 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -2.46 Total: -47.12 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -82.91 2.94 -79.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131648930.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.243 kcal (2) G-P(sol) polarization free energy of solvation -82.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds