Wall clock time and date at job start Wed Apr 1 2020 00:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.51159 * 2 1 4 4 C 1.53282 * 109.51622 * 120.10603 * 2 1 3 5 5 N 1.47160 * 108.53823 * 172.85310 * 4 2 1 6 6 C 1.34768 * 121.06443 * 128.87320 * 5 4 2 7 7 O 1.21285 * 120.00172 * 179.97438 * 6 5 4 8 8 C 1.50706 * 120.00010 * 0.02562 * 6 5 4 9 9 O 1.42899 * 109.47125 * 179.97438 * 8 6 5 10 10 C 1.42901 * 114.00267 * 179.97438 * 9 8 6 11 11 C 1.53006 * 109.46819 * 59.99697 * 10 9 8 12 12 C 1.52999 * 109.47546 * 179.97438 * 10 9 8 13 13 C 1.52997 * 109.46878 * 300.00230 * 10 9 8 14 14 C 1.47309 * 117.87429 * 308.85496 * 5 4 2 15 15 C 1.52516 * 108.41692 * 49.36292 * 14 5 4 16 16 C 1.54508 * 110.06862 * 72.18266 * 15 14 5 17 17 C 1.55026 * 101.53066 * 153.08786 * 16 15 14 18 18 N 1.47481 * 104.89611 * 323.62527 * 17 16 15 19 19 C 1.36939 * 125.65938 * 204.00168 * 18 17 16 20 20 H 1.08008 * 119.99774 * 179.97438 * 19 18 17 21 21 C 1.38811 * 120.00309 * 0.02562 * 19 18 17 22 22 N 1.31623 * 119.99835 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99932 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47260 * 89.99982 * 23 21 19 25 25 H 1.48505 * 109.46868 * 210.00183 * 23 21 19 26 26 H 1.48499 * 109.47084 * 329.99409 * 23 21 19 27 27 C 1.47188 * 108.67565 * 24.00842 * 18 17 16 28 28 O 1.42060 * 111.12455 * 309.63931 * 15 14 5 29 29 H 1.09002 * 109.47153 * 299.89434 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.89624 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.89606 * 1 2 3 32 32 H 1.09008 * 109.62571 * 292.56525 * 4 2 1 33 33 H 1.08996 * 109.62749 * 52.94648 * 4 2 1 34 34 H 1.08999 * 109.46823 * 300.00116 * 8 6 5 35 35 H 1.09000 * 109.46694 * 59.99930 * 8 6 5 36 36 H 1.08999 * 109.47040 * 60.00264 * 11 10 9 37 37 H 1.08994 * 109.47282 * 180.02562 * 11 10 9 38 38 H 1.08998 * 109.47012 * 300.00394 * 11 10 9 39 39 H 1.08998 * 109.46791 * 60.00160 * 12 10 9 40 40 H 1.08994 * 109.47032 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.46933 * 300.00116 * 12 10 9 42 42 H 1.08999 * 109.47346 * 60.00109 * 13 10 9 43 43 H 1.09004 * 109.46976 * 179.97438 * 13 10 9 44 44 H 1.08998 * 109.47338 * 299.99766 * 13 10 9 45 45 H 1.09000 * 109.67223 * 169.08964 * 14 5 4 46 46 H 1.08992 * 109.67454 * 289.62600 * 14 5 4 47 47 H 1.08997 * 111.01770 * 271.15126 * 16 15 14 48 48 H 1.09004 * 111.01199 * 35.02872 * 16 15 14 49 49 H 1.09000 * 110.35532 * 204.76785 * 17 16 15 50 50 H 1.08999 * 110.44370 * 82.52734 * 17 16 15 51 51 H 0.96994 * 119.99560 * 180.02562 * 22 21 19 52 52 H 1.09000 * 109.90228 * 239.13813 * 27 18 17 53 53 H 1.08996 * 109.90808 * 117.87403 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7247 1.2499 5 7 3.5032 -0.8641 1.1442 6 6 4.3131 -0.4780 2.1498 7 8 5.5148 -0.6021 2.0423 8 6 3.7256 0.1069 3.4083 9 8 4.7780 0.4349 4.3176 10 6 4.3264 1.0003 5.5498 11 6 3.4087 0.0044 6.2618 12 6 5.5311 1.3100 6.4408 13 6 3.5558 2.2913 5.2664 14 6 4.0523 -1.4395 -0.0957 15 6 3.4233 -0.7165 -1.2822 16 6 3.9928 0.7155 -1.3930 17 6 3.8329 0.9962 -2.9092 18 7 4.1087 -0.2956 -3.5651 19 6 4.5378 -0.4605 -4.8550 20 1 4.7124 -1.4531 -5.2434 21 6 4.7494 0.6481 -5.6632 22 7 4.5371 1.8578 -5.1898 23 14 5.3355 0.4231 -7.4226 24 1 4.1614 0.3003 -8.3235 25 1 6.1493 1.5976 -7.8272 26 1 6.1617 -0.8073 -7.5155 27 6 3.8460 -1.3782 -2.6031 28 8 2.0080 -0.6775 -1.1663 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 -1.0277 -0.0019 31 1 -0.3634 0.5155 -0.8891 32 1 1.7930 -0.1436 2.1379 33 1 1.5813 -1.7102 1.3162 34 1 3.1635 1.0077 3.1623 35 1 3.0600 -0.6217 3.8712 36 1 3.9577 -0.9154 6.4637 37 1 3.0639 0.4357 7.2015 38 1 2.5505 -0.2166 5.6273 39 1 6.1852 2.0193 5.9337 40 1 5.1865 1.7408 7.3808 41 1 6.0797 0.3900 6.6426 42 1 2.6975 2.0703 4.6320 43 1 3.2109 2.7223 6.2064 44 1 4.2095 3.0008 4.7592 45 1 5.1338 -1.3048 -0.1153 46 1 3.8133 -2.5018 -0.1446 47 1 3.4046 1.4170 -0.8015 48 1 5.0422 0.7427 -1.0991 49 1 4.5528 1.7476 -3.2338 50 1 2.8174 1.3246 -3.1306 51 1 4.6846 2.6323 -5.7547 52 1 4.7507 -1.9667 -2.4506 53 1 3.0430 -2.0161 -2.9723 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131648931.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:39 Heat of formation + Delta-G solvation = -109.340974 kcal Electronic energy + Delta-G solvation = -32011.165376 eV Core-core repulsion = 27883.461737 eV Total energy + Delta-G solvation = -4127.703639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.92120 -40.49512 -39.37523 -37.97963 -35.87998 -34.84297 -34.37737 -32.95400 -31.20997 -30.54735 -29.25355 -28.27034 -28.09785 -27.56901 -26.79959 -25.14838 -23.23629 -21.99203 -21.26429 -20.88347 -20.17165 -19.01813 -18.48836 -18.03410 -17.34370 -17.14427 -17.01134 -16.83948 -16.13463 -15.78354 -15.76219 -15.69412 -15.10991 -14.98364 -14.79316 -14.39941 -14.23699 -14.10149 -14.03542 -13.75778 -13.58437 -13.13706 -13.12171 -13.03405 -12.93838 -12.84918 -12.81399 -12.76843 -12.72109 -12.64180 -12.27227 -12.24685 -12.21239 -12.00803 -11.89646 -11.67889 -11.55381 -11.45951 -10.95577 -10.78465 -10.73835 -10.58847 -9.58972 -8.94403 -7.79715 -5.24976 1.43831 1.45662 1.48281 1.54955 1.57053 2.45272 2.60358 2.76467 3.30378 3.39796 3.49568 3.56415 3.77333 3.83630 3.90597 3.91213 3.96186 4.01431 4.08802 4.12256 4.19825 4.20611 4.36178 4.41723 4.48326 4.58859 4.68252 4.68580 4.70746 4.72131 4.77666 4.81811 4.83037 4.85757 4.93817 4.96156 4.96364 5.04791 5.11549 5.18371 5.22113 5.34532 5.35904 5.39391 5.42492 5.53465 5.72206 6.11517 6.24385 6.32280 6.34179 7.03140 7.06486 7.72626 8.37415 9.22962 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017849 B = 0.002702 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.380664 B =10359.707465 C =10950.802166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.056 3.944 3 H 0.056 0.944 4 C 0.079 3.921 5 N -0.609 5.609 6 C 0.510 3.490 7 O -0.573 6.573 8 C 0.048 3.952 9 O -0.388 6.388 10 C 0.094 3.906 11 C -0.176 4.176 12 C -0.139 4.139 13 C -0.179 4.179 14 C 0.108 3.892 15 C 0.114 3.886 16 C -0.148 4.148 17 C 0.168 3.832 18 N -0.624 5.624 19 C -0.239 4.239 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.985 3.015 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.268 1.268 27 C 0.147 3.853 28 O -0.372 6.372 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.050 0.950 32 H 0.129 0.871 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.056 0.944 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.070 0.930 50 H -0.014 1.014 51 H 0.247 0.753 52 H 0.048 0.952 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.491 -2.622 26.693 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.002 4.002 3 H 0.074 0.926 4 C -0.043 4.043 5 N -0.344 5.344 6 C 0.299 3.701 7 O -0.451 6.451 8 C -0.031 4.031 9 O -0.308 6.308 10 C 0.056 3.944 11 C -0.234 4.234 12 C -0.196 4.196 13 C -0.236 4.236 14 C -0.015 4.015 15 C 0.073 3.927 16 C -0.187 4.187 17 C 0.043 3.957 18 N -0.350 5.350 19 C -0.368 4.368 20 H 0.103 0.897 21 C -0.262 4.262 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.192 1.192 27 C 0.021 3.979 28 O -0.292 6.292 29 H 0.127 0.873 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.131 0.869 36 H 0.075 0.925 37 H 0.107 0.893 38 H 0.091 0.909 39 H 0.069 0.931 40 H 0.115 0.885 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.107 0.893 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.096 0.904 48 H 0.075 0.925 49 H 0.088 0.912 50 H 0.004 0.996 51 H 0.057 0.943 52 H 0.066 0.934 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.720 -2.698 26.324 28.190 hybrid contribution 0.533 0.342 -1.363 1.503 sum -9.187 -2.357 24.961 26.702 Atomic orbital electron populations 1.21732 0.89827 1.03928 1.03750 1.22844 0.97239 0.95454 0.84635 0.92632 1.22805 0.77766 1.03794 0.99904 1.48175 1.08140 1.62457 1.15581 1.21046 0.86368 0.77409 0.85255 1.90712 1.16966 1.55935 1.81477 1.22318 0.91123 1.01793 0.87863 1.88088 1.32100 1.82738 1.27875 1.21883 0.95796 0.93312 0.83430 1.22433 0.99618 0.99268 1.02042 1.21804 0.96741 1.01966 0.99133 1.22457 1.00571 0.96835 1.03781 1.21896 0.99338 0.97915 0.82361 1.21899 0.81815 0.94833 0.94141 1.23276 1.00066 0.97178 0.98189 1.21562 0.97025 0.89270 0.87813 1.44797 1.78345 1.01992 1.09880 1.19494 1.36525 0.93514 0.87263 0.89741 1.25703 1.02590 0.94988 1.02880 1.70069 1.56303 0.97602 1.36110 0.84977 0.77646 0.77054 0.79031 1.21204 1.21950 1.19240 1.21229 0.97691 0.91267 0.87679 1.87887 1.19268 1.77294 1.44724 0.87316 0.90815 0.93042 0.85302 0.88047 0.87815 0.86895 0.92506 0.89347 0.90919 0.93072 0.88479 0.92653 0.91028 0.89256 0.93026 0.90130 0.89053 0.90354 0.92497 0.91214 0.99589 0.94317 0.93423 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.57 71.98 0.69 -1.48 16 2 C 0.06 1.27 3.18 30.69 0.10 1.37 16 3 H 0.06 1.39 6.14 -2.39 -0.01 1.38 16 4 C 0.08 1.30 5.82 86.35 0.50 1.80 16 5 N -0.61 -15.40 2.92 -818.45 -2.39 -17.79 16 6 C 0.51 14.36 7.79 87.66 0.68 15.04 16 7 O -0.57 -22.45 15.99 15.99 0.26 -22.20 16 8 C 0.05 0.88 3.99 71.24 0.28 1.17 16 9 O -0.39 -9.17 9.52 -129.94 -1.24 -10.40 16 10 C 0.09 1.40 1.14 -10.79 -0.01 1.38 16 11 C -0.18 -1.71 8.25 71.98 0.59 -1.11 16 12 C -0.14 -2.01 8.84 71.98 0.64 -1.37 16 13 C -0.18 -2.02 8.25 71.98 0.59 -1.43 16 14 C 0.11 3.39 5.17 86.06 0.44 3.84 16 15 C 0.11 4.19 0.83 -10.22 -0.01 4.18 16 16 C -0.15 -6.19 5.91 31.80 0.19 -6.00 16 17 C 0.17 8.94 5.89 86.89 0.51 9.45 16 18 N -0.62 -34.11 3.40 -692.48 -2.36 -36.46 16 19 C -0.24 -13.97 10.28 84.03 0.86 -13.10 16 20 H 0.08 4.68 7.83 -2.91 -0.02 4.66 16 21 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 22 N -0.95 -58.83 10.09 21.65 0.22 -58.61 16 23 Si 0.99 47.06 29.55 68.60 2.03 49.09 16 24 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 25 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.15 6.47 6.61 86.47 0.57 7.04 16 28 O -0.37 -12.51 9.86 -148.97 -1.47 -13.98 16 29 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.13 1.05 6.05 -2.38 -0.01 1.04 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.40 5.94 -2.39 -0.01 1.39 16 35 H 0.11 1.29 6.28 -2.39 -0.01 1.28 16 36 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.50 6.54 -2.39 -0.02 0.49 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.07 0.62 6.54 -2.39 -0.02 0.60 16 43 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.08 2.94 6.89 -2.39 -0.02 2.92 16 46 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.08 2.93 5.99 -2.39 -0.01 2.91 16 48 H 0.06 2.50 7.86 -2.38 -0.02 2.48 16 49 H 0.07 4.20 5.88 -2.39 -0.01 4.19 16 50 H -0.01 -0.80 8.14 -2.39 -0.02 -0.81 16 51 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 52 H 0.05 2.01 7.79 -2.39 -0.02 1.99 16 53 H 0.04 1.59 8.06 -2.39 -0.02 1.57 16 Total: -1.00 -81.61 401.61 3.04 -78.57 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.88 Total: 14.62 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 7.10 Total: 17.17 kcal Atomic # 7 Polarization: -108.34 SS G_CDS: -4.52 Total: -112.86 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.45 Total: -46.58 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -81.61 3.04 -78.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131648931.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.768 kcal (2) G-P(sol) polarization free energy of solvation -81.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds