Wall clock time and date at job start Wed Apr 1 2020 00:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42910 * 113.99942 * 2 1 4 4 C 1.52998 * 109.46996 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46981 * 299.99579 * 4 3 2 6 6 C 1.53001 * 109.47298 * 59.99917 * 4 3 2 7 7 C 1.50705 * 109.46771 * 180.02562 * 4 3 2 8 8 O 1.21280 * 119.99950 * 0.61403 * 7 4 3 9 9 N 1.34774 * 119.99844 * 180.61458 * 7 4 3 10 10 C 1.47157 * 121.07609 * 354.96751 * 9 7 4 11 11 C 1.53279 * 108.56699 * 128.75919 * 10 9 7 12 12 H 1.08999 * 109.51157 * 293.05136 * 11 10 9 13 13 C 1.53008 * 109.50946 * 172.95252 * 11 10 9 14 14 O 1.43125 * 109.23020 * 52.97897 * 11 10 9 15 15 C 1.41897 * 114.36529 * 299.10534 * 14 11 10 16 16 C 1.54344 * 110.76244 * 183.36955 * 15 14 11 17 17 C 1.54469 * 102.87212 * 83.67818 * 16 15 14 18 18 N 1.47083 * 107.29623 * 21.47596 * 17 16 15 19 19 C 1.36935 * 125.62891 * 181.04127 * 18 17 16 20 20 H 1.07997 * 120.00293 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99904 * 359.95900 * 19 18 17 22 22 N 1.31619 * 120.00112 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.46878 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47146 * 120.00135 * 23 21 19 26 26 H 1.48496 * 109.46947 * 240.00362 * 23 21 19 27 27 C 1.47565 * 108.74635 * 1.00847 * 18 17 16 28 28 C 1.47330 * 121.07424 * 174.68610 * 9 7 4 29 29 H 1.08998 * 109.47120 * 60.00703 * 1 2 3 30 30 H 1.08995 * 109.47053 * 300.00162 * 1 2 3 31 31 H 1.09004 * 109.46673 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46463 * 300.00283 * 3 2 1 33 33 H 1.08994 * 109.47101 * 59.99636 * 3 2 1 34 34 H 1.09000 * 109.47319 * 69.86695 * 5 4 3 35 35 H 1.09011 * 109.46914 * 189.86247 * 5 4 3 36 36 H 1.08995 * 109.47711 * 309.86632 * 5 4 3 37 37 H 1.09002 * 109.46699 * 44.56296 * 6 4 3 38 38 H 1.09004 * 109.46588 * 164.56049 * 6 4 3 39 39 H 1.08999 * 109.47054 * 284.56072 * 6 4 3 40 40 H 1.09001 * 109.62276 * 248.48653 * 10 9 7 41 41 H 1.09000 * 109.61963 * 9.03915 * 10 9 7 42 42 H 1.08994 * 109.46789 * 60.00243 * 13 11 10 43 43 H 1.09004 * 109.46736 * 180.02562 * 13 11 10 44 44 H 1.08998 * 109.47174 * 300.00090 * 13 11 10 45 45 H 1.09001 * 110.73244 * 202.02064 * 16 15 14 46 46 H 1.09004 * 110.73536 * 325.33519 * 16 15 14 47 47 H 1.08998 * 109.87935 * 262.05584 * 17 16 15 48 48 H 1.08997 * 110.00635 * 140.97613 * 17 16 15 49 49 H 0.96998 * 120.00467 * 179.97438 * 22 21 19 50 50 H 1.08998 * 110.37955 * 217.86134 * 27 18 17 51 51 H 1.09000 * 110.47408 * 95.54923 * 27 18 17 52 52 H 1.09001 * 109.67517 * 348.94848 * 28 9 7 53 53 H 1.08998 * 109.67826 * 109.49159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9863 0.4258 1.2502 6 6 3.9874 0.4252 -1.2483 7 6 4.1483 2.5615 0.0013 8 8 3.4355 3.5426 0.0125 9 7 5.4886 2.7025 -0.0106 10 6 6.3763 1.5328 0.0862 11 6 7.3961 1.5980 -1.0562 12 1 6.8841 1.4645 -2.0092 13 6 8.4370 0.4912 -0.8759 14 8 8.0449 2.8736 -1.0367 15 6 7.1714 3.9775 -1.2155 16 6 7.9647 5.3005 -1.2645 17 6 8.4164 5.3765 -2.7397 18 7 7.5117 4.5176 -3.5188 19 6 7.5873 4.2957 -4.8680 20 1 6.8726 3.6445 -5.3491 21 6 8.5825 4.9080 -5.6174 22 7 9.4538 5.7015 -5.0311 23 14 8.6853 4.6059 -7.4579 24 1 7.5977 3.6825 -7.8694 25 1 8.5391 5.8952 -8.1801 26 1 10.0006 4.0003 -7.7874 27 6 6.5094 3.9337 -2.6066 28 6 6.1125 4.0321 -0.1272 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.6905 -0.6200 1.1668 35 1 5.0706 0.4903 1.3431 36 1 3.5194 0.8662 2.1312 37 1 3.4465 0.8002 -2.1171 38 1 5.0575 0.5720 -1.3952 39 1 3.7804 -0.6375 -1.1220 40 1 6.8976 1.5471 1.0434 41 1 5.7883 0.6190 0.0002 42 1 7.9410 -0.4793 -0.8871 43 1 9.1621 0.5385 -1.6884 44 1 8.9497 0.6263 0.0765 45 1 7.3227 6.1449 -1.0136 46 1 8.8268 5.2586 -0.5987 47 1 9.4409 5.0162 -2.8327 48 1 8.3512 6.4041 -3.0972 49 1 10.1494 6.1291 -5.5546 50 1 6.2914 2.9043 -2.8909 51 1 5.5967 4.5295 -2.6114 52 1 5.3553 4.7709 -0.3898 53 1 6.5777 4.3035 0.8204 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131673500.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:55 Heat of formation + Delta-G solvation = -96.252132 kcal Electronic energy + Delta-G solvation = -32985.782936 eV Core-core repulsion = 28858.646872 eV Total energy + Delta-G solvation = -4127.136064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.27471 -40.56061 -38.81919 -38.01368 -36.46018 -35.47471 -34.71248 -32.93817 -31.12881 -29.96995 -28.53956 -28.35258 -27.65809 -27.43853 -26.42007 -25.66907 -23.19802 -22.96493 -21.94550 -20.61381 -20.01131 -18.99660 -18.04156 -17.94479 -17.59557 -16.94865 -16.81719 -16.67082 -16.47362 -16.03018 -15.86811 -15.60862 -15.46718 -15.08480 -14.91868 -14.73304 -14.41977 -14.00475 -13.79522 -13.79096 -13.56945 -13.41528 -13.13145 -13.00113 -12.97316 -12.87285 -12.79850 -12.78700 -12.64363 -12.29704 -12.22356 -12.08690 -12.05975 -12.00521 -11.99068 -11.78566 -11.68016 -11.37511 -10.94705 -10.72886 -10.67147 -10.59628 -9.56954 -8.92662 -7.87538 -5.23302 1.42572 1.43293 1.44231 1.54323 1.69153 2.45954 2.61932 2.76359 3.28890 3.31003 3.46343 3.60689 3.69354 3.75080 3.77938 3.88065 3.95663 4.05734 4.08183 4.13183 4.36461 4.42153 4.42704 4.45784 4.52787 4.56819 4.59398 4.60523 4.61719 4.67517 4.69090 4.78171 4.80567 4.86849 4.89173 4.90948 4.93534 4.96815 5.02981 5.10582 5.19719 5.27603 5.30855 5.35282 5.38660 5.61958 5.73748 6.12138 6.15640 6.23780 6.37033 6.96648 7.06944 7.72494 8.37586 9.22987 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013952 B = 0.003401 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2006.427318 B = 8229.776589 C = 8813.490299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.092 3.908 4 C -0.074 4.074 5 C -0.147 4.147 6 C -0.147 4.147 7 C 0.526 3.474 8 O -0.579 6.579 9 N -0.606 5.606 10 C 0.063 3.937 11 C 0.059 3.941 12 H 0.045 0.955 13 C -0.136 4.136 14 O -0.366 6.366 15 C 0.108 3.892 16 C -0.118 4.118 17 C 0.191 3.809 18 N -0.619 5.619 19 C -0.244 4.244 20 H 0.075 0.925 21 C -0.063 4.063 22 N -0.948 5.948 23 Si 0.979 3.021 24 H -0.268 1.268 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.121 3.879 28 C 0.106 3.894 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.106 0.894 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.140 0.860 42 H 0.105 0.895 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.012 0.988 48 H 0.010 0.990 49 H 0.248 0.752 50 H 0.036 0.964 51 H 0.014 0.986 52 H 0.086 0.914 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.216 -15.297 16.649 25.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.014 3.986 4 C -0.078 4.078 5 C -0.204 4.204 6 C -0.204 4.204 7 C 0.315 3.685 8 O -0.459 6.459 9 N -0.338 5.338 10 C -0.058 4.058 11 C 0.001 3.999 12 H 0.063 0.937 13 C -0.193 4.193 14 O -0.285 6.285 15 C 0.066 3.934 16 C -0.157 4.157 17 C 0.067 3.933 18 N -0.345 5.345 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.256 4.256 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.192 1.192 25 H -0.217 1.217 26 H -0.215 1.215 27 C -0.005 4.005 28 C -0.017 4.017 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.124 0.876 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.110 0.890 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.116 0.884 40 H 0.121 0.879 41 H 0.157 0.843 42 H 0.124 0.876 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.031 0.969 48 H 0.028 0.972 49 H 0.057 0.943 50 H 0.054 0.946 51 H 0.031 0.969 52 H 0.104 0.896 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.175 -14.877 16.514 24.878 hybrid contribution -0.236 0.907 -1.623 1.874 sum -11.411 -13.970 14.891 23.391 Atomic orbital electron populations 1.22932 0.79563 1.04074 1.00483 1.87773 1.21104 1.26777 1.95518 1.22110 0.91360 0.84618 1.00488 1.20654 0.94765 0.91671 1.00669 1.22204 1.02954 1.01419 0.93791 1.22126 1.01766 1.01950 0.94552 1.20889 0.81601 0.91487 0.74512 1.90671 1.61232 1.42242 1.51768 1.48132 1.05358 1.08133 1.72188 1.23319 0.92552 0.89776 1.00181 1.22783 0.95024 0.84767 0.97299 0.93672 1.21727 0.98050 0.96378 1.03177 1.87833 1.34211 1.13702 1.92794 1.21980 0.90355 0.88343 0.92715 1.22724 1.00719 0.94513 0.97695 1.20880 0.92427 0.92751 0.87284 1.44702 1.32188 1.53916 1.03690 1.19404 1.11177 1.23656 0.83097 0.90668 1.25641 0.97665 0.99642 1.02627 1.70189 1.19097 1.35134 1.35228 0.85009 0.77483 0.77225 0.79595 1.19222 1.21728 1.21533 1.22033 0.91594 0.96119 0.90726 1.21895 0.95207 0.85420 0.99212 0.94083 0.93416 0.87565 0.94245 0.92985 0.88951 0.89508 0.92192 0.93482 0.91079 0.88381 0.87904 0.84316 0.87637 0.93345 0.90352 0.88908 0.88850 0.96929 0.97225 0.94292 0.94587 0.96883 0.89572 0.88424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.39 -7.42 9.84 -148.98 -1.47 -8.89 16 3 C 0.09 2.01 4.02 71.98 0.29 2.30 16 4 C -0.07 -1.53 0.58 -52.93 -0.03 -1.57 16 5 C -0.15 -2.10 7.81 71.98 0.56 -1.54 16 6 C -0.15 -2.82 7.76 71.98 0.56 -2.26 16 7 C 0.53 14.54 6.49 87.66 0.57 15.10 16 8 O -0.58 -20.46 15.50 -3.03 -0.05 -20.51 16 9 N -0.61 -15.65 2.94 -819.48 -2.41 -18.06 16 10 C 0.06 1.22 3.31 86.35 0.29 1.51 16 11 C 0.06 1.55 2.96 30.69 0.09 1.64 16 12 H 0.05 1.39 5.59 -2.39 -0.01 1.38 16 13 C -0.14 -2.68 9.57 71.98 0.69 -1.99 16 14 O -0.37 -12.77 9.93 -148.95 -1.48 -14.25 16 15 C 0.11 3.86 0.83 -10.30 -0.01 3.86 16 16 C -0.12 -4.49 6.12 31.55 0.19 -4.30 16 17 C 0.19 9.92 5.39 86.77 0.47 10.38 16 18 N -0.62 -33.63 3.40 -692.75 -2.36 -35.98 16 19 C -0.24 -14.37 10.28 84.03 0.86 -13.51 16 20 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 21 C -0.06 -3.68 5.49 84.86 0.47 -3.21 16 22 N -0.95 -58.54 10.31 21.65 0.22 -58.31 16 23 Si 0.98 47.09 29.55 68.60 2.03 49.12 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 27 C 0.12 5.37 6.18 86.56 0.53 5.91 16 28 C 0.11 3.13 5.24 85.87 0.45 3.58 16 29 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.04 0.99 8.11 -2.39 -0.02 0.98 16 33 H 0.05 1.17 8.09 -2.39 -0.02 1.15 16 34 H 0.09 1.09 7.80 -2.39 -0.02 1.07 16 35 H 0.09 1.00 4.61 -2.38 -0.01 0.99 16 36 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 37 H 0.05 1.06 8.05 -2.39 -0.02 1.04 16 38 H 0.07 1.36 4.26 -2.39 -0.01 1.35 16 39 H 0.10 1.47 7.90 -2.39 -0.02 1.45 16 40 H 0.10 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.14 1.99 3.00 -2.39 -0.01 1.98 16 42 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.09 3.15 8.00 -2.39 -0.02 3.13 16 46 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.01 0.73 7.38 -2.39 -0.02 0.71 16 48 H 0.01 0.55 7.49 -2.39 -0.02 0.53 16 49 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 50 H 0.04 1.60 6.09 -2.39 -0.01 1.59 16 51 H 0.01 0.62 7.80 -2.39 -0.02 0.60 16 52 H 0.09 2.85 6.88 -2.39 -0.02 2.83 16 53 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -76.69 394.36 2.62 -74.07 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.89 Total: 15.32 kcal Atomic # 6 Polarization: 10.27 SS G_CDS: 7.23 Total: 17.50 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -4.54 Total: -112.36 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -2.99 Total: -43.65 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -76.69 2.62 -74.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673500.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.181 kcal (2) G-P(sol) polarization free energy of solvation -76.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds