Wall clock time and date at job start Wed Apr 1 2020 00:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99476 * 2 1 4 4 C 1.53001 * 109.46968 * 180.02562 * 3 2 1 5 5 C 1.52994 * 109.47496 * 59.99677 * 4 3 2 6 6 C 1.53007 * 109.46863 * 299.99610 * 4 3 2 7 7 C 1.50696 * 109.47238 * 180.02562 * 4 3 2 8 8 O 1.21289 * 120.00063 * 8.53830 * 7 4 3 9 9 N 1.34772 * 120.00036 * 188.54132 * 7 4 3 10 10 C 1.47188 * 121.06091 * 354.32328 * 9 7 4 11 11 C 1.53290 * 108.53608 * 231.08389 * 10 9 7 12 12 H 1.09001 * 109.51314 * 67.10409 * 11 10 9 13 13 C 1.53008 * 109.51017 * 187.19804 * 11 10 9 14 14 O 1.43107 * 109.23699 * 307.12281 * 11 10 9 15 15 C 1.42065 * 114.30295 * 61.17990 * 14 11 10 16 16 C 1.54518 * 110.33646 * 61.88929 * 15 14 11 17 17 C 1.55012 * 101.51764 * 83.94467 * 16 15 14 18 18 N 1.47487 * 104.90510 * 36.37416 * 17 16 15 19 19 C 1.36937 * 125.65514 * 155.96863 * 18 17 16 20 20 H 1.08002 * 119.99607 * 180.02562 * 19 18 17 21 21 C 1.38816 * 120.00475 * 0.02570 * 19 18 17 22 22 N 1.31614 * 119.99519 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00117 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47027 * 60.00196 * 23 21 19 25 25 H 1.48501 * 109.47256 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46853 * 300.00083 * 23 21 19 27 27 C 1.47184 * 108.68058 * 335.97343 * 18 17 16 28 28 C 1.47329 * 121.06005 * 174.30394 * 9 7 4 29 29 H 1.08998 * 109.47454 * 60.00493 * 1 2 3 30 30 H 1.09004 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47632 * 299.99645 * 1 2 3 32 32 H 1.08997 * 109.47434 * 59.99671 * 3 2 1 33 33 H 1.09006 * 109.47300 * 299.99881 * 3 2 1 34 34 H 1.09000 * 109.47213 * 195.21365 * 5 4 3 35 35 H 1.09008 * 109.47210 * 315.21220 * 5 4 3 36 36 H 1.08996 * 109.47264 * 75.20957 * 5 4 3 37 37 H 1.09000 * 109.47233 * 310.19155 * 6 4 3 38 38 H 1.09003 * 109.46886 * 70.18854 * 6 4 3 39 39 H 1.09000 * 109.47091 * 190.18757 * 6 4 3 40 40 H 1.09005 * 109.62501 * 111.37125 * 10 9 7 41 41 H 1.08997 * 109.62330 * 350.79847 * 10 9 7 42 42 H 1.08997 * 109.47132 * 59.99680 * 13 11 10 43 43 H 1.08994 * 109.46737 * 179.97438 * 13 11 10 44 44 H 1.08998 * 109.46449 * 300.00213 * 13 11 10 45 45 H 1.09004 * 111.01807 * 202.01445 * 16 15 14 46 46 H 1.09005 * 111.01229 * 325.85044 * 16 15 14 47 47 H 1.08997 * 110.35095 * 155.22803 * 17 16 15 48 48 H 1.08994 * 110.35711 * 277.41327 * 17 16 15 49 49 H 0.97002 * 119.99701 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.90465 * 242.15617 * 27 18 17 51 51 H 1.08993 * 109.91130 * 120.88526 * 27 18 17 52 52 H 1.09001 * 109.68428 * 10.88607 * 28 9 7 53 53 H 1.09005 * 109.68151 * 250.33055 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9864 0.4258 -1.2501 6 6 3.9873 0.4254 1.2484 7 6 4.1482 2.5615 0.0000 8 8 3.4460 3.5379 0.1568 9 7 5.4767 2.7078 -0.1738 10 6 6.3670 1.5378 -0.2423 11 6 7.5217 1.7455 0.7442 12 1 7.1374 1.7245 1.7641 13 6 8.5544 0.6310 0.5643 14 8 8.1367 3.0125 0.4902 15 6 7.2701 4.1263 0.6535 16 6 6.7705 4.2085 2.1133 17 6 7.9388 4.9626 2.7984 18 7 8.4035 5.9361 1.7926 19 6 9.0700 7.1023 2.0589 20 1 9.3686 7.7508 1.2485 21 6 9.3620 7.4511 3.3705 22 7 8.9986 6.6606 4.3580 23 14 10.2719 9.0416 3.7335 24 1 9.4818 10.1912 3.2240 25 1 10.4598 9.1807 5.2000 26 1 11.5977 9.0170 3.0652 27 6 8.0318 5.4463 0.4554 28 6 6.0839 4.0440 -0.3015 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.6884 1.8465 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 5.0203 0.1036 -1.1261 35 1 3.3490 -0.4466 -1.3952 36 1 3.9112 1.0793 -2.1192 37 1 3.5165 0.8619 2.1292 38 1 3.6965 -0.6216 1.1621 39 1 5.0710 0.4948 1.3436 40 1 6.7626 1.4375 -1.2531 41 1 5.8121 0.6392 0.0274 42 1 8.9394 0.6536 -0.4552 43 1 9.3753 0.7797 1.2657 44 1 8.0842 -0.3339 0.7537 45 1 5.8446 4.7802 2.1781 46 1 6.6435 3.2133 2.5396 47 1 7.5852 5.4790 3.6908 48 1 8.7393 4.2688 3.0548 49 1 9.2030 6.9041 5.2745 50 1 8.9291 5.2716 -0.1385 51 1 7.3905 6.1741 -0.0415 52 1 5.3501 4.8072 -0.0422 53 1 6.4257 4.1956 -1.3255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131673501.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:59 Heat of formation + Delta-G solvation = -95.868062 kcal Electronic energy + Delta-G solvation = -32697.480614 eV Core-core repulsion = 28570.361205 eV Total energy + Delta-G solvation = -4127.119410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.24965 -40.57871 -38.82467 -38.03487 -36.46404 -35.46257 -34.64787 -32.92428 -31.08626 -30.08904 -28.59014 -28.33347 -27.58785 -27.40018 -26.43477 -25.63708 -23.26403 -22.87837 -21.96098 -20.60840 -20.05741 -19.01582 -18.04562 -17.93818 -17.57523 -16.93203 -16.87587 -16.66896 -16.44862 -16.02015 -15.93057 -15.70101 -15.34883 -15.01232 -14.87970 -14.65586 -14.43400 -14.12713 -13.89367 -13.73645 -13.57891 -13.34864 -13.11290 -13.08859 -12.96917 -12.82058 -12.81617 -12.74200 -12.69601 -12.30825 -12.26509 -12.22428 -12.07893 -12.04453 -11.89071 -11.82315 -11.48720 -11.32649 -10.93695 -10.76407 -10.66890 -10.63840 -9.56561 -8.94320 -7.79461 -5.24785 1.44960 1.45709 1.49586 1.55688 1.66780 2.45551 2.60625 2.77047 3.27565 3.31236 3.46010 3.57075 3.72542 3.74494 3.79211 3.87308 3.92863 4.03463 4.08271 4.17124 4.33966 4.38577 4.44013 4.47082 4.48337 4.56921 4.59215 4.61363 4.62248 4.70926 4.72595 4.77624 4.80694 4.85722 4.87191 4.88031 4.94081 5.00993 5.05488 5.11408 5.19303 5.27689 5.35918 5.36123 5.42590 5.53508 5.72295 6.11827 6.23635 6.25761 6.33585 6.97901 7.06477 7.72822 8.37733 9.22997 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018880 B = 0.002938 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.699859 B = 9528.468952 C =10171.458304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.392 6.392 3 C 0.091 3.909 4 C -0.074 4.074 5 C -0.147 4.147 6 C -0.145 4.145 7 C 0.524 3.476 8 O -0.581 6.581 9 N -0.603 5.603 10 C 0.062 3.938 11 C 0.056 3.944 12 H 0.055 0.945 13 C -0.137 4.137 14 O -0.372 6.372 15 C 0.113 3.887 16 C -0.147 4.147 17 C 0.169 3.831 18 N -0.623 5.623 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.985 3.015 24 H -0.275 1.275 25 H -0.293 1.293 26 H -0.277 1.277 27 C 0.147 3.853 28 C 0.106 3.894 29 H 0.046 0.954 30 H 0.107 0.893 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.099 0.901 41 H 0.141 0.859 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.070 0.930 48 H -0.015 1.015 49 H 0.247 0.753 50 H 0.035 0.965 51 H 0.049 0.951 52 H 0.083 0.917 53 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.302 -20.473 -12.240 26.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.312 6.312 3 C 0.014 3.986 4 C -0.077 4.077 5 C -0.203 4.203 6 C -0.202 4.202 7 C 0.314 3.686 8 O -0.461 6.461 9 N -0.335 5.335 10 C -0.059 4.059 11 C -0.002 4.002 12 H 0.073 0.927 13 C -0.194 4.194 14 O -0.292 6.292 15 C 0.072 3.928 16 C -0.186 4.186 17 C 0.044 3.956 18 N -0.350 5.350 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.813 3.187 24 H -0.201 1.201 25 H -0.219 1.219 26 H -0.203 1.203 27 C 0.022 3.978 28 C -0.017 4.017 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.116 0.884 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.159 0.841 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.126 0.874 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.088 0.912 48 H 0.003 0.997 49 H 0.057 0.943 50 H 0.053 0.947 51 H 0.066 0.934 52 H 0.102 0.898 53 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.293 -19.994 -12.066 26.390 hybrid contribution 0.136 1.651 0.801 1.840 sum -12.157 -18.343 -11.265 24.722 Atomic orbital electron populations 1.22933 0.79518 1.04105 1.00493 1.87759 1.21124 1.26764 1.95508 1.22058 0.91465 0.84607 1.00499 1.20671 0.94699 0.91454 1.00887 1.22194 1.03771 1.00619 0.93755 1.22053 1.01950 1.01851 0.94298 1.20979 0.81514 0.91540 0.74567 1.90691 1.61594 1.42753 1.51073 1.48101 1.06390 1.07427 1.71605 1.23406 0.91425 0.89328 1.01757 1.22867 0.94726 0.84596 0.97985 0.92749 1.21749 0.97962 0.96230 1.03486 1.87889 1.37554 1.13848 1.89859 1.21913 0.89670 0.87273 0.93910 1.23264 0.98470 1.00323 0.96543 1.21550 0.91399 0.89287 0.93388 1.44783 1.66999 1.21684 1.01489 1.19456 1.28398 0.96340 0.92747 0.89755 1.25701 1.02657 1.02391 0.95358 1.70063 1.52660 1.38749 0.98599 0.85052 0.78445 0.78844 0.76375 1.20120 1.21918 1.20269 1.21230 0.96894 0.91441 0.88264 1.21940 0.94280 0.85586 0.99919 0.93551 0.87506 0.93968 0.93904 0.93372 0.88840 0.89387 0.92672 0.93179 0.88413 0.90571 0.88265 0.84145 0.90726 0.92892 0.87406 0.92393 0.90546 0.91213 0.99725 0.94311 0.94711 0.93353 0.89838 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.39 -6.90 9.33 -148.98 -1.39 -8.29 16 3 C 0.09 1.89 4.12 71.98 0.30 2.19 16 4 C -0.07 -1.42 0.58 -52.93 -0.03 -1.45 16 5 C -0.15 -1.97 7.91 71.98 0.57 -1.40 16 6 C -0.14 -2.36 7.84 71.98 0.56 -1.80 16 7 C 0.52 14.17 6.43 87.66 0.56 14.74 16 8 O -0.58 -20.73 15.46 -3.06 -0.05 -20.77 16 9 N -0.60 -15.28 2.90 -818.31 -2.37 -17.65 16 10 C 0.06 1.12 3.52 86.35 0.30 1.43 16 11 C 0.06 1.33 3.14 30.69 0.10 1.43 16 12 H 0.05 1.43 6.13 -2.39 -0.01 1.41 16 13 C -0.14 -2.35 9.57 71.98 0.69 -1.66 16 14 O -0.37 -12.66 9.87 -148.97 -1.47 -14.13 16 15 C 0.11 4.16 0.83 -10.21 -0.01 4.15 16 16 C -0.15 -6.13 5.91 31.80 0.19 -5.94 16 17 C 0.17 8.96 5.89 86.88 0.51 9.47 16 18 N -0.62 -33.98 3.40 -692.49 -2.36 -36.33 16 19 C -0.24 -14.02 10.28 84.03 0.86 -13.15 16 20 H 0.08 4.65 7.83 -2.91 -0.02 4.62 16 21 C -0.07 -4.03 5.49 84.86 0.47 -3.57 16 22 N -0.95 -58.74 10.09 21.65 0.22 -58.52 16 23 Si 0.99 46.89 29.55 68.60 2.03 48.92 16 24 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 26 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 27 C 0.15 6.45 6.62 86.48 0.57 7.03 16 28 C 0.11 3.27 5.18 86.06 0.45 3.72 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 1.03 8.00 -2.39 -0.02 1.01 16 33 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 0.87 4.90 -2.39 -0.01 0.85 16 35 H 0.09 1.07 7.29 -2.38 -0.02 1.05 16 36 H 0.05 0.81 8.04 -2.39 -0.02 0.79 16 37 H 0.05 0.97 8.11 -2.39 -0.02 0.95 16 38 H 0.10 1.25 7.96 -2.39 -0.02 1.23 16 39 H 0.08 1.11 5.24 -2.39 -0.01 1.10 16 40 H 0.10 1.47 8.13 -2.38 -0.02 1.45 16 41 H 0.14 1.75 2.56 -2.39 -0.01 1.75 16 42 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 44 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 2.52 7.86 -2.39 -0.02 2.50 16 46 H 0.08 2.88 5.98 -2.38 -0.01 2.87 16 47 H 0.07 4.20 5.88 -2.39 -0.01 4.18 16 48 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 49 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 50 H 0.03 1.54 8.06 -2.38 -0.02 1.52 16 51 H 0.05 2.02 7.79 -2.39 -0.02 2.00 16 52 H 0.08 2.94 6.87 -2.39 -0.02 2.92 16 53 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -75.98 394.47 2.84 -73.13 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: 0.89 Total: 16.91 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 7.34 Total: 16.74 kcal Atomic # 7 Polarization: -108.00 SS G_CDS: -4.51 Total: -112.50 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -2.91 Total: -43.20 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -75.98 2.84 -73.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673501.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.733 kcal (2) G-P(sol) polarization free energy of solvation -75.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds