Wall clock time and date at job start Wed Apr 1 2020 00:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00314 * 2 1 4 4 C 1.52999 * 109.47314 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46664 * 60.00602 * 4 3 2 6 6 C 1.53000 * 109.47465 * 300.00377 * 4 3 2 7 7 C 1.50705 * 109.46867 * 180.02562 * 4 3 2 8 8 O 1.21276 * 120.00228 * 8.54372 * 7 4 3 9 9 N 1.34781 * 119.99576 * 188.53836 * 7 4 3 10 10 C 1.47161 * 121.05870 * 354.31262 * 9 7 4 11 11 C 1.53287 * 108.52907 * 231.14562 * 10 9 7 12 12 H 1.09000 * 109.51039 * 67.03711 * 11 10 9 13 13 C 1.53000 * 109.50901 * 187.13279 * 11 10 9 14 14 O 1.43098 * 109.23581 * 307.10882 * 11 10 9 15 15 C 1.42065 * 114.33215 * 61.15660 * 14 11 10 16 16 C 1.54493 * 110.37363 * 177.19038 * 15 14 11 17 17 C 1.55022 * 101.53340 * 276.05509 * 16 15 14 18 18 N 1.47488 * 104.90441 * 323.64130 * 17 16 15 19 19 C 1.36939 * 125.66662 * 204.04531 * 18 17 16 20 20 H 1.07994 * 120.00074 * 179.97438 * 19 18 17 21 21 C 1.38812 * 119.99832 * 359.95976 * 19 18 17 22 22 N 1.31620 * 120.00077 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99774 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47302 * 59.99903 * 23 21 19 25 25 H 1.48508 * 109.47036 * 179.97438 * 23 21 19 26 26 H 1.48492 * 109.47156 * 299.99551 * 23 21 19 27 27 C 1.47179 * 108.67175 * 24.00786 * 18 17 16 28 28 C 1.47305 * 121.05583 * 174.32737 * 9 7 4 29 29 H 1.08998 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46549 * 299.99363 * 1 2 3 31 31 H 1.08993 * 109.46929 * 59.99364 * 1 2 3 32 32 H 1.09005 * 109.46527 * 60.00095 * 3 2 1 33 33 H 1.09000 * 109.47265 * 300.00810 * 3 2 1 34 34 H 1.08998 * 109.46606 * 195.13263 * 5 4 3 35 35 H 1.08997 * 109.47178 * 315.13526 * 5 4 3 36 36 H 1.08996 * 109.47127 * 75.13528 * 5 4 3 37 37 H 1.08999 * 109.47093 * 310.21111 * 6 4 3 38 38 H 1.09002 * 109.46660 * 70.20701 * 6 4 3 39 39 H 1.09003 * 109.46906 * 190.20712 * 6 4 3 40 40 H 1.08999 * 109.62511 * 350.85781 * 10 9 7 41 41 H 1.09002 * 109.62783 * 111.43715 * 10 9 7 42 42 H 1.08997 * 109.46960 * 59.99728 * 13 11 10 43 43 H 1.08997 * 109.46876 * 180.02562 * 13 11 10 44 44 H 1.08997 * 109.47071 * 299.99863 * 13 11 10 45 45 H 1.09004 * 111.01248 * 157.99457 * 16 15 14 46 46 H 1.08995 * 111.05170 * 34.13055 * 16 15 14 47 47 H 1.09004 * 110.35679 * 204.78945 * 17 16 15 48 48 H 1.08994 * 110.44899 * 82.54590 * 17 16 15 49 49 H 0.97001 * 119.99683 * 180.02562 * 22 21 19 50 50 H 1.09001 * 109.91037 * 117.85417 * 27 18 17 51 51 H 1.08995 * 109.91244 * 239.12520 * 27 18 17 52 52 H 1.08998 * 109.67974 * 10.86088 * 28 9 7 53 53 H 1.08997 * 109.68415 * 250.30697 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9874 0.4251 -1.2484 6 6 3.9865 0.4254 1.2501 7 6 4.1484 2.5613 0.0013 8 8 3.4462 3.5377 0.1573 9 7 5.4771 2.7074 -0.1714 10 6 6.3672 1.5375 -0.2385 11 6 7.5201 1.7451 0.7501 12 1 7.1338 1.7253 1.7692 13 6 8.5522 0.6296 0.5731 14 8 8.1359 3.0118 0.4970 15 6 7.2697 4.1263 0.6578 16 6 8.0423 5.4450 0.4321 17 6 8.6716 5.6785 1.8295 18 7 7.6523 5.2110 2.7875 19 6 7.5343 5.6179 4.0897 20 1 6.7498 5.2142 4.7125 21 6 8.4232 6.5489 4.6092 22 7 9.3797 7.0403 3.8503 23 14 8.2625 7.1034 6.3857 24 1 8.4051 5.9305 7.2852 25 1 9.3251 8.0944 6.6930 26 1 6.9302 7.7259 6.5914 27 6 6.7826 4.2351 2.1113 28 6 6.0845 4.0434 -0.2986 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 1.6886 1.8462 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 5.0216 0.1042 -1.1241 35 1 3.3509 -0.4478 -1.3930 36 1 3.9116 1.0781 -2.1179 37 1 3.5148 0.8619 2.1305 38 1 3.6960 -0.6216 1.1637 39 1 5.0701 0.4951 1.3462 40 1 5.8118 0.6390 0.0303 41 1 6.7647 1.4372 -1.2485 42 1 8.9392 0.6511 -0.4456 43 1 9.3714 0.7777 1.2767 44 1 8.0810 -0.3348 0.7625 45 1 7.3630 6.2559 0.1689 46 1 8.8135 5.3217 -0.3281 47 1 8.8761 6.7385 1.9809 48 1 9.5874 5.0974 1.9366 49 1 10.0011 7.6906 4.2135 50 1 6.8608 3.2651 2.6024 51 1 5.7495 4.5819 2.1314 52 1 5.3504 4.8065 -0.0403 53 1 6.4275 4.1948 -1.3221 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131673502.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:04 Heat of formation + Delta-G solvation = -73.980990 kcal Electronic energy + Delta-G solvation = -32836.389319 eV Core-core repulsion = 28710.219004 eV Total energy + Delta-G solvation = -4126.170315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.08858 -39.29584 -37.92002 -36.47041 -35.30364 -34.37060 -33.05376 -31.33048 -29.38878 -28.45050 -27.65565 -27.56110 -26.68012 -25.84643 -25.60154 -23.93562 -22.05557 -21.62558 -20.27026 -19.26763 -18.82382 -17.10474 -16.96568 -16.75501 -16.44705 -16.09919 -15.73391 -15.32788 -15.10212 -14.71151 -14.70778 -14.16258 -14.13503 -13.86183 -13.61644 -13.47834 -13.27454 -12.73413 -12.66724 -12.44236 -12.32259 -12.26937 -12.16271 -12.01583 -11.92369 -11.63120 -11.52235 -11.43582 -11.28988 -11.06666 -10.90075 -10.85558 -10.82545 -10.42099 -10.24502 -10.11147 -9.92560 -9.89425 -9.61998 -9.54572 -9.47628 -8.61436 -8.34411 -6.80043 -5.62059 -3.03353 2.56540 2.73888 3.42914 3.46659 3.48220 3.57772 3.84880 4.21735 4.50337 4.55708 4.59245 4.68155 4.84001 4.88108 5.04838 5.06176 5.08758 5.16660 5.20268 5.29532 5.33646 5.37164 5.38638 5.42854 5.47385 5.50850 5.55744 5.58570 5.60346 5.64086 5.70616 5.74467 5.85854 5.92552 5.98763 6.01992 6.06200 6.16284 6.27843 6.32503 6.48884 6.55866 6.64860 6.71737 6.86956 7.33300 7.58751 7.64800 7.65728 7.88108 8.09814 8.38412 9.25103 9.85275 10.50622 11.41924 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.003341 C = 0.003013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.840192 B = 8379.166675 C = 9292.229432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.086 3.914 4 C -0.078 4.078 5 C -0.152 4.152 6 C -0.147 4.147 7 C 0.529 3.471 8 O -0.538 6.538 9 N -0.606 5.606 10 C 0.059 3.941 11 C 0.066 3.934 12 H 0.068 0.932 13 C -0.141 4.141 14 O -0.353 6.353 15 C 0.095 3.905 16 C -0.130 4.130 17 C 0.158 3.842 18 N -0.600 5.600 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.010 4.010 22 N -0.922 5.922 23 Si 0.915 3.085 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.123 3.877 28 C 0.098 3.902 29 H 0.085 0.915 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.017 0.983 49 H 0.253 0.747 50 H 0.023 0.977 51 H 0.030 0.970 52 H 0.103 0.897 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.311 -16.513 -12.626 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C 0.009 3.991 4 C -0.081 4.081 5 C -0.209 4.209 6 C -0.204 4.204 7 C 0.316 3.684 8 O -0.414 6.414 9 N -0.339 5.339 10 C -0.063 4.063 11 C 0.007 3.993 12 H 0.086 0.914 13 C -0.199 4.199 14 O -0.272 6.272 15 C 0.054 3.946 16 C -0.169 4.169 17 C 0.033 3.967 18 N -0.326 5.326 19 C -0.350 4.350 20 H 0.093 0.907 21 C -0.206 4.206 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.213 1.213 25 H -0.215 1.215 26 H -0.212 1.212 27 C -0.004 4.004 28 C -0.024 4.024 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.083 0.917 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.090 0.910 47 H 0.125 0.875 48 H 0.035 0.965 49 H 0.063 0.937 50 H 0.041 0.959 51 H 0.048 0.952 52 H 0.121 0.879 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -10.285 -15.975 -12.440 22.709 hybrid contribution -0.516 0.433 0.995 1.202 sum -10.801 -15.542 -11.445 22.118 Atomic orbital electron populations 1.22721 0.80856 1.02586 1.00172 1.87782 1.19676 1.27773 1.95513 1.22207 0.91047 0.84149 1.01649 1.20653 0.95083 0.93387 0.98992 1.22191 1.02492 1.00801 0.95383 1.22038 1.01726 1.01073 0.95600 1.20308 0.81731 0.90582 0.75734 1.90706 1.60603 1.41005 1.49130 1.48052 1.06078 1.07605 1.72146 1.23171 0.92528 0.89626 1.01022 1.22501 0.93040 0.85707 0.98034 0.91393 1.21698 0.99078 0.95875 1.03232 1.87872 1.36741 1.12645 1.89903 1.22298 0.89560 0.87953 0.94785 1.22998 0.99448 0.92621 1.01817 1.21936 0.89652 1.02699 0.82420 1.44483 1.32437 1.46563 1.09142 1.19014 1.11465 1.18861 0.85682 0.90724 1.24768 0.97663 0.99688 0.98443 1.69783 1.19196 1.33692 1.34387 0.86150 0.77090 0.78129 0.84121 1.21267 1.21529 1.21156 1.21708 0.94522 0.93666 0.90466 1.22269 0.95921 0.84532 0.99723 0.89615 0.93977 0.94110 0.92097 0.92680 0.90793 0.90402 0.92319 0.91731 0.90401 0.91311 0.86973 0.90555 0.91745 0.91113 0.91183 0.90604 0.91029 0.87534 0.96455 0.93677 0.95921 0.95233 0.87917 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.96 9.33 -35.23 -0.33 -4.29 16 3 C 0.09 0.98 4.12 37.16 0.15 1.13 16 4 C -0.08 -0.87 0.58 -155.66 -0.09 -0.96 16 5 C -0.15 -1.34 7.91 37.16 0.29 -1.05 16 6 C -0.15 -1.50 7.84 37.16 0.29 -1.21 16 7 C 0.53 7.72 6.43 -10.98 -0.07 7.65 16 8 O -0.54 -9.79 15.46 5.56 0.09 -9.70 16 9 N -0.61 -8.50 2.92 -172.62 -0.50 -9.00 16 10 C 0.06 0.66 3.52 -3.53 -0.01 0.65 16 11 C 0.07 0.90 3.14 -26.58 -0.08 0.81 16 12 H 0.07 1.04 6.22 -51.93 -0.32 0.72 16 13 C -0.14 -1.49 9.57 37.16 0.36 -1.13 16 14 O -0.35 -6.20 9.91 -35.23 -0.35 -6.55 16 15 C 0.09 1.75 0.81 -89.73 -0.07 1.68 16 16 C -0.13 -2.54 6.21 -24.88 -0.15 -2.70 16 17 C 0.16 3.95 5.89 -2.43 -0.01 3.93 16 18 N -0.60 -15.99 3.40 -170.23 -0.58 -16.57 16 19 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 20 H 0.07 2.10 7.83 -52.49 -0.41 1.69 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -27.30 10.09 55.49 0.56 -26.74 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.12 2.74 6.33 -3.32 -0.02 2.72 16 28 C 0.10 1.56 5.22 -3.85 -0.02 1.54 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.76 8.01 -51.93 -0.42 0.34 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.55 4.90 -51.93 -0.25 0.30 16 35 H 0.08 0.65 7.29 -51.93 -0.38 0.27 16 36 H 0.06 0.54 8.05 -51.93 -0.42 0.12 16 37 H 0.06 0.73 8.11 -51.93 -0.42 0.31 16 38 H 0.08 0.69 7.96 -51.93 -0.41 0.27 16 39 H 0.07 0.68 5.24 -51.93 -0.27 0.40 16 40 H 0.11 1.01 2.56 -51.93 -0.13 0.88 16 41 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 1.41 8.01 -51.93 -0.42 1.00 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 47 H 0.11 2.96 5.88 -51.93 -0.31 2.65 16 48 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.02 0.52 6.01 -51.93 -0.31 0.21 16 51 H 0.03 0.70 7.61 -51.93 -0.40 0.30 16 52 H 0.10 1.81 6.81 -51.93 -0.35 1.46 16 53 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 394.67 15.07 5.95 5.95 Total: -1.00 -33.52 394.67 -7.78 -41.30 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -9.01 Total: 0.58 kcal Atomic # 6 Polarization: 6.07 SS G_CDS: 1.42 Total: 7.49 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.52 Total: -52.31 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.59 Total: -20.54 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.52 -7.78 -41.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673502.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.684 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds