Wall clock time and date at job start Wed Apr 1 2020 00:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 113.99787 * 2 1 4 4 C 1.53004 * 109.46627 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46625 * 60.01062 * 4 3 2 6 6 C 1.52992 * 109.47425 * 300.00691 * 4 3 2 7 7 C 1.50702 * 109.46560 * 180.02562 * 4 3 2 8 8 O 1.21279 * 120.00442 * 0.51304 * 7 4 3 9 9 N 1.34782 * 119.99750 * 180.51436 * 7 4 3 10 10 C 1.47168 * 121.07640 * 354.93565 * 9 7 4 11 11 C 1.53289 * 108.55451 * 128.76987 * 10 9 7 12 12 H 1.08998 * 109.50932 * 293.04752 * 11 10 9 13 13 C 1.52998 * 109.51141 * 172.94783 * 11 10 9 14 14 O 1.43116 * 109.21906 * 53.02489 * 11 10 9 15 15 C 1.41884 * 114.39557 * 299.11075 * 14 11 10 16 16 C 1.54368 * 110.72385 * 296.62655 * 15 14 11 17 17 C 1.54473 * 102.95286 * 276.11344 * 16 15 14 18 18 N 1.47083 * 107.29001 * 338.86131 * 17 16 15 19 19 C 1.36939 * 125.63175 * 178.89263 * 18 17 16 20 20 H 1.08001 * 120.00323 * 185.99755 * 19 18 17 21 21 C 1.38808 * 119.99729 * 6.00009 * 19 18 17 22 22 N 1.31620 * 120.00228 * 352.82132 * 21 19 18 23 23 Si 1.86802 * 119.99962 * 173.09696 * 21 19 18 24 24 H 1.48498 * 109.47410 * 274.74003 * 23 21 19 25 25 H 1.48501 * 109.46955 * 34.73996 * 23 21 19 26 26 H 1.48500 * 109.47186 * 154.73619 * 23 21 19 27 27 C 1.47573 * 108.73769 * 358.62671 * 18 17 16 28 28 C 1.47326 * 121.07869 * 174.95968 * 9 7 4 29 29 H 1.08997 * 109.47468 * 59.99346 * 1 2 3 30 30 H 1.09000 * 109.46878 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46928 * 299.99076 * 1 2 3 32 32 H 1.09001 * 109.46748 * 60.00768 * 3 2 1 33 33 H 1.08992 * 109.47290 * 300.00735 * 3 2 1 34 34 H 1.08997 * 109.46756 * 170.41385 * 5 4 3 35 35 H 1.09001 * 109.46845 * 290.40483 * 5 4 3 36 36 H 1.08996 * 109.47630 * 50.41067 * 5 4 3 37 37 H 1.09003 * 109.47314 * 313.11075 * 6 4 3 38 38 H 1.08997 * 109.47706 * 73.11720 * 6 4 3 39 39 H 1.09005 * 109.46786 * 193.11792 * 6 4 3 40 40 H 1.08994 * 109.62488 * 248.48542 * 10 9 7 41 41 H 1.08998 * 109.62670 * 8.86380 * 10 9 7 42 42 H 1.09007 * 109.46999 * 59.99967 * 13 11 10 43 43 H 1.09002 * 109.47437 * 179.97438 * 13 11 10 44 44 H 1.08998 * 109.47479 * 300.00422 * 13 11 10 45 45 H 1.08998 * 110.73656 * 34.66167 * 16 15 14 46 46 H 1.09000 * 110.73497 * 157.79884 * 16 15 14 47 47 H 1.09000 * 109.99510 * 219.37769 * 17 16 15 48 48 H 1.08994 * 109.77232 * 98.22030 * 17 16 15 49 49 H 0.97004 * 120.00118 * 180.02562 * 22 21 19 50 50 H 1.09005 * 110.37155 * 142.39026 * 27 18 17 51 51 H 1.09003 * 110.37774 * 264.62095 * 27 18 17 52 52 H 1.08996 * 109.67281 * 109.40388 * 28 9 7 53 53 H 1.09000 * 109.70705 * 348.88542 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9873 0.4253 -1.2485 6 6 3.9864 0.4254 1.2500 7 6 4.1484 2.5613 0.0013 8 8 3.4356 3.5425 0.0106 9 7 5.4888 2.7023 -0.0086 10 6 6.3763 1.5326 0.0912 11 6 7.3981 1.5968 -1.0497 12 1 6.8878 1.4622 -2.0033 13 6 8.4389 0.4905 -0.8664 14 8 8.0473 2.8721 -1.0294 15 6 7.1752 3.9766 -1.2099 16 6 6.5130 3.9277 -2.6035 17 6 7.5749 4.5821 -3.5146 18 7 8.4507 5.3915 -2.6537 19 6 9.5336 6.1167 -3.0741 20 1 10.1724 6.6018 -2.3509 21 6 9.8101 6.2283 -4.4297 22 7 9.1197 5.5253 -5.3023 23 14 11.1674 7.3706 -5.0151 24 1 10.6275 8.7460 -5.1628 25 1 12.2719 7.3763 -4.0225 26 1 11.6819 6.8973 -6.3253 27 6 7.9659 5.2983 -1.2630 28 6 6.1129 4.0322 -0.1191 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.6887 1.8463 0.8901 33 1 1.6885 1.8464 -0.8898 34 1 5.0720 0.4856 -1.3377 35 1 3.6871 -0.6194 -1.1670 36 1 3.5249 0.8686 -2.1303 37 1 3.4753 0.8284 2.1244 38 1 3.7420 -0.6312 1.1412 39 1 5.0634 0.5383 1.3747 40 1 6.8960 1.5481 1.0492 41 1 5.7882 0.6186 0.0085 42 1 7.9431 -0.4802 -0.8773 43 1 9.1649 0.5365 -1.6782 44 1 8.9500 0.6266 0.0867 45 1 6.3243 2.8975 -2.9052 46 1 5.5892 4.5063 -2.6123 47 1 7.0900 5.2197 -4.2538 48 1 8.1585 3.8092 -4.0147 49 1 9.3133 5.6031 -6.2497 50 1 8.8063 5.2659 -0.5695 51 1 7.3152 6.1414 -1.0305 52 1 6.5758 4.3004 0.8306 53 1 5.3568 4.7725 -0.3807 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131673503.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:07 Heat of formation + Delta-G solvation = -95.582847 kcal Electronic energy + Delta-G solvation = -32779.181795 eV Core-core repulsion = 28652.074753 eV Total energy + Delta-G solvation = -4127.107042 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.26569 -40.55488 -38.81498 -38.03392 -36.45988 -35.46644 -34.62976 -32.91556 -31.12126 -30.08663 -28.58537 -28.34593 -27.58658 -27.37048 -26.41882 -25.64369 -23.18334 -22.89133 -22.04095 -20.61867 -20.02239 -18.97257 -18.03159 -17.93425 -17.57077 -16.94517 -16.80087 -16.66687 -16.48994 -15.99691 -15.85322 -15.62712 -15.41618 -15.10415 -14.86164 -14.72680 -14.40659 -14.04150 -13.81396 -13.80097 -13.58349 -13.39909 -13.12722 -12.99525 -12.98519 -12.83498 -12.80975 -12.77480 -12.70091 -12.29609 -12.23513 -12.09173 -12.07418 -12.02638 -11.86322 -11.84283 -11.59879 -11.36250 -10.94082 -10.68884 -10.66222 -10.60223 -9.57006 -8.91277 -7.86418 -5.21105 1.44046 1.45401 1.48409 1.56063 1.67975 2.48683 2.61226 2.76896 3.29740 3.32465 3.45423 3.56750 3.72601 3.76720 3.82466 3.88372 3.91113 4.01846 4.09164 4.15762 4.36061 4.40950 4.42931 4.45306 4.47382 4.56251 4.59961 4.61296 4.63589 4.72472 4.74865 4.77041 4.80674 4.84993 4.87733 4.90783 4.94136 4.96748 5.05238 5.10788 5.19125 5.28443 5.30678 5.36144 5.43148 5.57111 5.68845 6.12736 6.16373 6.24538 6.39247 6.97152 7.07804 7.74430 8.39993 9.24936 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020589 B = 0.002911 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.625086 B = 9616.704577 C = 9993.826712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.393 6.393 3 C 0.092 3.908 4 C -0.075 4.075 5 C -0.148 4.148 6 C -0.148 4.148 7 C 0.527 3.473 8 O -0.579 6.579 9 N -0.604 5.604 10 C 0.061 3.939 11 C 0.058 3.942 12 H 0.055 0.945 13 C -0.138 4.138 14 O -0.368 6.368 15 C 0.111 3.889 16 C -0.149 4.149 17 C 0.198 3.802 18 N -0.620 5.620 19 C -0.241 4.241 20 H 0.084 0.916 21 C -0.067 4.067 22 N -0.952 5.952 23 Si 0.980 3.020 24 H -0.285 1.285 25 H -0.268 1.268 26 H -0.295 1.295 27 C 0.146 3.854 28 C 0.106 3.894 29 H 0.042 0.958 30 H 0.106 0.894 31 H 0.046 0.954 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.142 0.858 42 H 0.107 0.893 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.006 0.994 48 H 0.005 0.995 49 H 0.246 0.754 50 H 0.053 0.947 51 H 0.047 0.953 52 H 0.090 0.910 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 -17.000 15.037 26.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.312 6.312 3 C 0.014 3.986 4 C -0.078 4.078 5 C -0.204 4.204 6 C -0.205 4.205 7 C 0.316 3.684 8 O -0.459 6.459 9 N -0.336 5.336 10 C -0.060 4.060 11 C 0.000 4.000 12 H 0.073 0.927 13 C -0.195 4.195 14 O -0.288 6.288 15 C 0.069 3.931 16 C -0.187 4.187 17 C 0.073 3.927 18 N -0.346 5.346 19 C -0.369 4.369 20 H 0.102 0.898 21 C -0.260 4.260 22 N -0.600 5.600 23 Si 0.808 3.192 24 H -0.212 1.212 25 H -0.193 1.193 26 H -0.222 1.222 27 C 0.020 3.980 28 C -0.017 4.017 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.077 0.923 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.159 0.841 42 H 0.126 0.874 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.025 0.975 48 H 0.024 0.976 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.109 0.891 53 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.894 -16.585 14.900 25.756 hybrid contribution 0.200 1.380 -1.120 1.788 sum -12.695 -15.205 13.781 24.130 Atomic orbital electron populations 1.22932 0.79559 1.04070 1.00491 1.87771 1.21100 1.26823 1.95521 1.22105 0.91365 0.84592 1.00508 1.20663 0.94753 0.91645 1.00753 1.22143 1.02204 1.01734 0.94366 1.22194 1.02772 1.01551 0.93952 1.20886 0.81515 0.91486 0.74515 1.90677 1.61220 1.42236 1.51752 1.48098 1.05345 1.07932 1.72211 1.23336 0.92629 0.89832 1.00192 1.22825 0.94928 0.84652 0.97605 0.92728 1.21743 0.98143 0.96518 1.03098 1.87885 1.34296 1.13729 1.92864 1.22050 0.89889 0.88178 0.92975 1.23160 0.98137 1.00913 0.96539 1.20758 0.89149 0.91898 0.90881 1.44697 1.31238 1.55702 1.03010 1.19447 1.02690 1.23243 0.91556 0.89785 1.25695 1.02480 1.01787 0.96015 1.70208 1.44837 1.44100 1.00891 0.85070 0.78600 0.78314 0.77203 1.21156 1.19268 1.22161 1.21523 0.96575 0.92724 0.87164 1.21898 0.95164 0.85521 0.99107 0.93973 0.87588 0.93515 0.93186 0.94026 0.90521 0.88583 0.93270 0.92304 0.88884 0.89702 0.88407 0.84052 0.87417 0.93169 0.90831 0.90689 0.91584 0.97532 0.97636 0.94459 0.92853 0.93499 0.89148 0.89373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.57 16 2 O -0.39 -7.01 9.79 -148.98 -1.46 -8.46 16 3 C 0.09 1.89 4.04 71.98 0.29 2.18 16 4 C -0.07 -1.44 0.58 -52.93 -0.03 -1.47 16 5 C -0.15 -2.49 7.83 71.98 0.56 -1.93 16 6 C -0.15 -2.01 7.78 71.98 0.56 -1.45 16 7 C 0.53 13.83 6.50 87.66 0.57 14.40 16 8 O -0.58 -19.71 15.50 -3.02 -0.05 -19.76 16 9 N -0.60 -14.94 2.94 -818.66 -2.41 -17.35 16 10 C 0.06 1.13 3.31 86.35 0.29 1.41 16 11 C 0.06 1.41 2.95 30.69 0.09 1.50 16 12 H 0.05 1.45 5.70 -2.39 -0.01 1.44 16 13 C -0.14 -2.56 9.57 71.98 0.69 -1.87 16 14 O -0.37 -12.79 9.93 -148.95 -1.48 -14.27 16 15 C 0.11 3.95 0.84 -10.17 -0.01 3.94 16 16 C -0.15 -5.97 5.87 31.56 0.19 -5.78 16 17 C 0.20 10.41 5.39 86.77 0.47 10.88 16 18 N -0.62 -33.31 3.40 -692.75 -2.36 -35.66 16 19 C -0.24 -13.93 10.26 84.03 0.86 -13.07 16 20 H 0.08 4.63 7.84 -2.91 -0.02 4.60 16 21 C -0.07 -3.93 5.48 84.86 0.46 -3.47 16 22 N -0.95 -59.15 10.36 21.65 0.22 -58.93 16 23 Si 0.98 46.95 29.56 68.60 2.03 48.98 16 24 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 27 C 0.15 6.18 6.41 86.55 0.56 6.74 16 28 C 0.11 3.14 5.28 86.01 0.45 3.59 16 29 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.08 1.20 4.26 -2.39 -0.01 1.19 16 35 H 0.10 1.29 7.82 -2.39 -0.02 1.27 16 36 H 0.05 0.98 8.12 -2.39 -0.02 0.96 16 37 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 38 H 0.09 1.01 7.90 -2.39 -0.02 0.99 16 39 H 0.08 0.94 4.65 -2.38 -0.01 0.93 16 40 H 0.10 1.51 8.08 -2.39 -0.02 1.49 16 41 H 0.14 1.82 2.95 -2.39 -0.01 1.82 16 42 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 2.77 6.08 -2.39 -0.01 2.76 16 46 H 0.07 2.61 7.82 -2.39 -0.02 2.59 16 47 H 0.01 0.38 7.38 -2.39 -0.02 0.37 16 48 H 0.01 0.32 7.54 -2.39 -0.02 0.30 16 49 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 50 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 51 H 0.05 1.90 8.00 -2.39 -0.02 1.88 16 52 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 53 H 0.09 2.87 6.91 -2.39 -0.02 2.86 16 Total: -1.00 -76.00 394.67 2.64 -73.36 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.89 Total: 14.91 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.25 Total: 17.19 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -4.54 Total: -111.94 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -2.98 Total: -42.49 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -76.00 2.64 -73.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131673503.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.225 kcal (2) G-P(sol) polarization free energy of solvation -75.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds