Wall clock time and date at job start Tue Mar 31 2020 23:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 114.00028 * 2 1 4 4 C 1.53001 * 109.47013 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.53784 * 299.99882 * 4 3 2 6 6 O 1.21286 * 119.99881 * 239.81504 * 5 4 3 7 7 N 1.34775 * 120.00110 * 59.83056 * 5 4 3 8 8 C 1.46505 * 119.99699 * 179.97438 * 7 5 4 9 9 H 1.08993 * 109.50238 * 35.06465 * 8 7 5 10 10 C 1.53049 * 109.49259 * 155.15756 * 8 7 5 11 11 C 1.53035 * 109.53962 * 58.58860 * 10 8 7 12 12 C 1.52764 * 109.38415 * 61.23346 * 11 10 8 13 13 H 1.08996 * 109.43101 * 65.43237 * 12 11 10 14 14 C 1.53001 * 109.50598 * 185.70795 * 12 11 10 15 15 N 1.46926 * 109.00895 * 305.58863 * 12 11 10 16 16 C 1.36939 * 120.62908 * 233.58264 * 15 12 11 17 17 H 1.07997 * 120.00283 * 31.05772 * 16 15 12 18 18 C 1.38811 * 119.99514 * 211.33677 * 16 15 12 19 19 N 1.31618 * 120.00392 * 11.04221 * 18 16 15 20 20 Si 1.86804 * 119.99567 * 191.03944 * 18 16 15 21 21 H 1.48502 * 109.46910 * 59.99997 * 20 18 16 22 22 H 1.48504 * 109.46927 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47392 * 300.00101 * 20 18 16 24 24 C 1.46926 * 118.73680 * 53.31228 * 15 12 11 25 25 C 1.53179 * 109.61579 * 60.22233 * 4 3 2 26 26 C 1.53090 * 109.15987 * 176.89402 * 25 4 3 27 27 O 1.42905 * 109.41420 * 302.39022 * 26 25 4 28 28 C 1.42896 * 114.09736 * 61.16044 * 27 26 25 29 29 C 1.53093 * 109.41556 * 298.84139 * 28 27 26 30 30 H 1.08998 * 109.47297 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47126 * 300.00274 * 1 2 3 32 32 H 1.09001 * 109.47388 * 59.99571 * 1 2 3 33 33 H 1.09004 * 109.46897 * 60.00223 * 3 2 1 34 34 H 1.08997 * 109.47125 * 300.00008 * 3 2 1 35 35 H 0.96996 * 120.00176 * 359.97438 * 7 5 4 36 36 H 1.08999 * 109.45395 * 178.60434 * 10 8 7 37 37 H 1.08995 * 109.46129 * 298.57549 * 10 8 7 38 38 H 1.08999 * 109.49880 * 181.31774 * 11 10 8 39 39 H 1.09008 * 109.49472 * 301.37904 * 11 10 8 40 40 H 1.09007 * 109.46974 * 179.53204 * 14 12 11 41 41 H 1.08998 * 109.47367 * 299.52557 * 14 12 11 42 42 H 1.08997 * 109.47548 * 59.53253 * 14 12 11 43 43 H 0.97001 * 120.00201 * 180.02562 * 19 18 16 44 44 H 1.09001 * 109.58607 * 66.42474 * 24 15 12 45 45 H 1.08997 * 109.58167 * 186.85260 * 24 15 12 46 46 H 1.09004 * 109.51788 * 296.79388 * 25 4 3 47 47 H 1.08995 * 109.52530 * 56.98664 * 25 4 3 48 48 H 1.09001 * 109.47831 * 182.40883 * 26 25 4 49 49 H 1.09000 * 109.48504 * 62.37511 * 26 25 4 50 50 H 1.09002 * 109.48287 * 178.85918 * 28 27 26 51 51 H 1.08997 * 109.48217 * 58.82657 * 28 27 26 52 52 H 1.09000 * 109.52351 * 297.70061 * 29 28 27 53 53 H 1.09002 * 109.57591 * 177.54905 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9823 0.4367 1.2290 6 8 4.7275 0.9683 2.0247 7 7 3.5541 -0.8230 1.4443 8 6 3.9890 -1.5502 2.6395 9 1 4.0840 -0.8553 3.4738 10 6 2.9579 -2.6269 2.9856 11 6 2.7998 -3.5837 1.8018 12 6 4.1369 -4.2668 1.5200 13 1 4.4041 -4.9028 2.3638 14 6 4.0200 -5.1147 0.2518 15 7 5.1693 -3.2385 1.3316 16 6 5.9508 -3.2323 0.2071 17 1 5.5535 -3.5968 -0.7286 18 6 7.2555 -2.7629 0.2714 19 7 7.8140 -2.5290 1.4400 20 14 8.2187 -2.4632 -1.3009 21 1 7.5137 -1.4512 -2.1280 22 1 9.5766 -1.9661 -0.9623 23 1 8.3315 -3.7332 -2.0621 24 6 5.3432 -2.2136 2.3698 25 6 3.9910 0.4299 -1.2533 26 6 5.5209 0.3826 -1.2829 27 8 6.0379 1.7145 -1.2541 28 6 5.6836 2.4527 -0.0830 29 6 4.1603 2.5831 -0.0051 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 2.9581 -1.2480 0.8081 36 1 3.2941 -3.1838 3.8602 37 1 1.9992 -2.1554 3.2018 38 1 2.0483 -4.3363 2.0401 39 1 2.4869 -3.0235 0.9205 40 1 4.9767 -5.5953 0.0466 41 1 3.2538 -5.8768 0.3935 42 1 3.7466 -4.4763 -0.5883 43 1 8.7257 -2.2006 1.4849 44 1 5.7108 -2.6787 3.2845 45 1 6.0558 -1.4634 2.0269 46 1 3.5956 -0.5857 -1.2306 47 1 3.6252 0.9444 -2.1418 48 1 5.8516 -0.1161 -2.1940 49 1 5.8845 -0.1674 -0.4149 50 1 6.1315 3.4453 -0.1295 51 1 6.0493 1.9298 0.8008 52 1 3.7978 3.1413 -0.8683 53 1 3.8849 3.1080 0.9097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132102597.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:31:49 Heat of formation + Delta-G solvation = -130.658076 kcal Electronic energy + Delta-G solvation = -34688.722258 eV Core-core repulsion = 30560.094240 eV Total energy + Delta-G solvation = -4128.628018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.96840 -39.95569 -38.73036 -38.56196 -35.69397 -35.16535 -34.48125 -32.37603 -31.75541 -31.55894 -29.12235 -27.84101 -26.94524 -26.69502 -24.65989 -24.39638 -23.85857 -23.15251 -22.00031 -20.56515 -20.26777 -18.18763 -17.95585 -17.45089 -17.30560 -17.13358 -16.86640 -16.62825 -16.17631 -16.04090 -15.78753 -15.65068 -15.34612 -15.18958 -14.84826 -14.75551 -14.54293 -14.25078 -13.95092 -13.67324 -13.45573 -13.18310 -13.12890 -12.94217 -12.85539 -12.76005 -12.57444 -12.50236 -12.39305 -12.25908 -12.17183 -12.11883 -12.06090 -11.60608 -11.53523 -11.48556 -11.18163 -11.02420 -10.73162 -10.52801 -10.48212 -10.22455 -9.75190 -8.49222 -7.77683 -5.25357 1.41019 1.44363 1.48503 1.81092 2.42272 2.52039 2.75909 2.93361 3.39395 3.57927 3.64747 3.67324 3.85328 4.00288 4.05855 4.11428 4.13705 4.22131 4.29728 4.38323 4.45988 4.53481 4.62083 4.63421 4.65513 4.67904 4.70862 4.74096 4.77104 4.80405 4.86397 4.90147 4.98383 5.00062 5.04475 5.06783 5.07775 5.11889 5.12559 5.23481 5.30142 5.36437 5.59628 5.66035 5.74864 5.79495 5.89062 6.21196 6.23360 6.48998 6.88888 7.23830 7.55544 7.97067 8.49317 9.27013 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009294 B = 0.007205 C = 0.005083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.058532 B = 3885.340420 C = 5507.410211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.408 6.408 3 C 0.084 3.916 4 C -0.076 4.076 5 C 0.516 3.484 6 O -0.592 6.592 7 N -0.676 5.676 8 C 0.124 3.876 9 H 0.057 0.943 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.154 3.846 13 H 0.011 0.989 14 C -0.127 4.127 15 N -0.591 5.591 16 C -0.227 4.227 17 H 0.074 0.926 18 C -0.044 4.044 19 N -0.937 5.937 20 Si 0.931 3.069 21 H -0.262 1.262 22 H -0.312 1.312 23 H -0.276 1.276 24 C 0.177 3.823 25 C -0.120 4.120 26 C 0.057 3.943 27 O -0.400 6.400 28 C 0.046 3.954 29 C -0.117 4.117 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.411 0.589 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.239 0.761 44 H -0.011 1.011 45 H 0.048 0.952 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.089 0.911 49 H 0.022 0.978 50 H 0.110 0.890 51 H 0.038 0.962 52 H 0.107 0.893 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.512 6.320 -4.342 20.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.328 6.328 3 C 0.007 3.993 4 C -0.079 4.079 5 C 0.302 3.698 6 O -0.474 6.474 7 N -0.328 5.328 8 C 0.017 3.983 9 H 0.075 0.925 10 C -0.146 4.146 11 C -0.155 4.155 12 C 0.049 3.951 13 H 0.029 0.971 14 C -0.184 4.184 15 N -0.315 5.315 16 C -0.358 4.358 17 H 0.091 0.909 18 C -0.239 4.239 19 N -0.584 5.584 20 Si 0.761 3.239 21 H -0.188 1.188 22 H -0.239 1.239 23 H -0.202 1.202 24 C 0.050 3.950 25 C -0.158 4.158 26 C -0.019 4.019 27 O -0.319 6.319 28 C -0.031 4.031 29 C -0.155 4.155 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.071 0.929 43 H 0.048 0.952 44 H 0.007 0.993 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.123 0.877 48 H 0.107 0.893 49 H 0.041 0.959 50 H 0.128 0.872 51 H 0.056 0.944 52 H 0.126 0.874 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.649 6.584 -3.915 20.161 hybrid contribution 1.242 -0.102 -0.204 1.263 sum -17.407 6.483 -4.119 19.026 Atomic orbital electron populations 1.22902 0.78882 1.03899 1.00878 1.87739 1.21816 1.27626 1.95572 1.22436 0.88847 0.85498 1.02478 1.20998 0.96908 0.96842 0.93153 1.20754 0.79564 0.82364 0.87087 1.90601 1.38018 1.69588 1.49145 1.45828 1.48635 1.13259 1.25084 1.21464 0.96323 0.93238 0.87274 0.92500 1.21620 0.98083 0.95969 0.98946 1.21850 0.97377 0.98639 0.97655 1.20670 0.88932 0.89496 0.96016 0.97131 1.21709 1.00610 0.98927 0.97152 1.44158 1.39139 1.27765 1.20440 1.19264 0.91179 1.36754 0.88613 0.90862 1.25653 0.97473 1.03161 0.97581 1.70127 1.13012 1.51221 1.24056 0.85929 0.77835 0.78508 0.81629 1.18786 1.23900 1.20183 1.20791 0.93306 0.91087 0.89819 1.22044 0.94656 1.01920 0.97148 1.22627 0.94603 0.83365 1.01351 1.87814 1.75791 1.25766 1.42519 1.22842 0.95745 0.96910 0.87564 1.21916 0.95121 0.93938 1.04480 0.88590 0.93604 0.92479 0.92273 0.89215 0.74913 0.91298 0.90095 0.89375 0.92049 0.94663 0.90736 0.92944 0.95154 0.99263 0.93365 0.90016 0.87746 0.89267 0.95935 0.87171 0.94391 0.87447 0.89679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.44 7.61 -148.98 -1.13 -9.58 16 3 C 0.08 1.69 4.81 71.98 0.35 2.03 16 4 C -0.08 -2.14 0.53 -52.81 -0.03 -2.17 16 5 C 0.52 19.38 5.11 87.66 0.45 19.83 16 6 O -0.59 -27.04 13.50 -3.05 -0.04 -27.08 16 7 N -0.68 -24.38 4.44 -442.15 -1.96 -26.35 16 8 C 0.12 4.87 2.81 45.07 0.13 5.00 16 9 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 10 C -0.11 -3.28 5.59 30.62 0.17 -3.11 16 11 C -0.12 -3.39 5.18 30.53 0.16 -3.24 16 12 C 0.15 5.88 3.48 44.83 0.16 6.04 16 13 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 14 C -0.13 -4.29 7.95 71.98 0.57 -3.72 16 15 N -0.59 -28.27 2.91 -676.04 -1.97 -30.24 16 16 C -0.23 -11.95 8.54 84.03 0.72 -11.23 16 17 H 0.07 3.69 6.26 -2.91 -0.02 3.67 16 18 C -0.04 -2.49 5.04 84.86 0.43 -2.07 16 19 N -0.94 -58.31 11.09 21.65 0.24 -58.07 16 20 Si 0.93 46.38 29.57 68.60 2.03 48.41 16 21 H -0.26 -12.32 6.04 99.48 0.60 -11.72 16 22 H -0.31 -16.43 7.11 99.48 0.71 -15.73 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 C 0.18 8.89 4.86 86.36 0.42 9.31 16 25 C -0.12 -3.56 4.67 30.68 0.14 -3.42 16 26 C 0.06 2.24 6.54 72.01 0.47 2.71 16 27 O -0.40 -15.35 10.77 -148.98 -1.60 -16.95 16 28 C 0.05 1.56 6.55 72.01 0.47 2.03 16 29 C -0.12 -3.08 4.56 30.68 0.14 -2.94 16 30 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 35 H 0.41 13.49 4.14 -92.71 -0.38 13.11 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.06 1.78 6.40 -2.38 -0.02 1.77 16 40 H 0.03 1.35 7.64 -2.38 -0.02 1.33 16 41 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.05 1.76 7.43 -2.39 -0.02 1.74 16 43 H 0.24 14.97 8.31 -92.71 -0.77 14.20 16 44 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 45 H 0.05 2.90 6.13 -2.39 -0.01 2.89 16 46 H 0.08 2.52 7.18 -2.39 -0.02 2.50 16 47 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 48 H 0.09 3.46 7.16 -2.39 -0.02 3.45 16 49 H 0.02 1.10 7.38 -2.39 -0.02 1.09 16 50 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 51 H 0.04 1.64 5.80 -2.39 -0.01 1.63 16 52 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 53 H 0.08 2.15 8.03 -2.39 -0.02 2.13 16 Total: -1.00 -73.07 390.81 1.95 -71.12 By element: Atomic # 1 Polarization: 31.62 SS G_CDS: 0.40 Total: 32.02 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 5.99 Total: 16.71 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -3.69 Total: -114.65 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -2.78 Total: -53.61 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -73.07 1.95 -71.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132102597.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.538 kcal (2) G-P(sol) polarization free energy of solvation -73.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds