Wall clock time and date at job start Tue Mar 31 2020 23:32:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.58459 * 2 1 4 4 C 1.53197 * 109.58194 * 120.27731 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.27771 * 4 2 1 6 6 C 1.53047 * 109.66302 * 298.84731 * 5 4 2 7 7 H 1.08999 * 109.52450 * 181.26751 * 6 5 4 8 8 N 1.46498 * 109.49588 * 301.35268 * 6 5 4 9 9 C 1.34780 * 119.99485 * 204.83369 * 8 6 5 10 10 O 1.21283 * 120.00043 * 0.02562 * 9 8 6 11 11 C 1.50697 * 119.99897 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.47320 * 180.02562 * 11 9 8 13 13 O 1.42901 * 109.47089 * 180.02562 * 12 11 9 14 14 C 1.42901 * 113.99762 * 179.97438 * 13 12 11 15 15 C 1.53171 * 109.54639 * 269.55820 * 14 13 12 16 16 C 1.53094 * 109.16260 * 183.15343 * 15 14 13 17 17 O 1.42907 * 109.41524 * 57.60923 * 16 15 14 18 18 C 1.42902 * 114.09359 * 298.83890 * 17 16 15 19 19 C 1.53092 * 109.41411 * 61.16309 * 18 17 16 20 20 C 1.53190 * 109.30574 * 61.30429 * 6 5 4 21 21 N 1.46922 * 109.58870 * 239.71078 * 2 1 3 22 22 C 1.36938 * 120.62907 * 6.58978 * 21 2 1 23 23 H 1.08007 * 119.99809 * 330.15256 * 22 21 2 24 24 C 1.38812 * 120.00272 * 150.16239 * 22 21 2 25 25 N 1.31625 * 119.99667 * 344.50109 * 24 22 21 26 26 Si 1.86795 * 120.00181 * 164.50719 * 24 22 21 27 27 H 1.48502 * 109.47234 * 59.99768 * 26 24 22 28 28 H 1.48499 * 109.47170 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47439 * 299.99570 * 26 24 22 30 30 H 1.08994 * 109.47174 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.46773 * 60.00190 * 1 2 3 32 32 H 1.09005 * 109.47081 * 300.00681 * 1 2 3 33 33 H 1.08997 * 109.49974 * 294.37540 * 4 2 1 34 34 H 1.08999 * 109.49399 * 54.47841 * 4 2 1 35 35 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 36 36 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 37 37 H 0.96998 * 120.00542 * 24.83861 * 8 6 5 38 38 H 1.09002 * 109.47226 * 300.00444 * 11 9 8 39 39 H 1.08999 * 109.47115 * 60.00170 * 11 9 8 40 40 H 1.08998 * 109.46750 * 299.99917 * 12 11 9 41 41 H 1.08999 * 109.47104 * 59.99899 * 12 11 9 42 42 H 1.09003 * 109.54085 * 29.82386 * 14 13 12 43 43 H 1.08999 * 109.52080 * 303.05839 * 15 14 13 44 44 H 1.08999 * 109.52790 * 63.24836 * 15 14 13 45 45 H 1.08998 * 109.47965 * 297.62334 * 16 15 14 46 46 H 1.08998 * 109.47971 * 177.59199 * 16 15 14 47 47 H 1.08991 * 109.48331 * 301.17942 * 18 17 16 48 48 H 1.09002 * 109.48644 * 181.14362 * 18 17 16 49 49 H 1.08997 * 109.52229 * 182.48633 * 19 18 17 50 50 H 1.08997 * 109.52359 * 62.29274 * 19 18 17 51 51 H 1.09007 * 109.58396 * 185.58099 * 20 6 5 52 52 H 1.09000 * 109.59057 * 65.15157 * 20 6 5 53 53 H 0.96999 * 119.99631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7277 1.2465 5 6 3.5674 -0.8494 1.1692 6 6 3.9569 -1.6658 -0.0654 7 1 5.0411 -1.7701 -0.1060 8 7 3.3404 -2.9925 0.0113 9 6 3.8952 -4.0321 -0.6430 10 8 4.9049 -3.8692 -1.2948 11 6 3.2608 -5.3968 -0.5646 12 6 4.0826 -6.3894 -1.3894 13 8 3.4806 -7.6833 -1.3156 14 6 4.1736 -8.6898 -2.0563 15 6 3.6155 -8.7529 -3.4813 16 6 4.3087 -9.8858 -4.2429 17 8 4.1112 -11.1174 -3.5455 18 6 4.6548 -11.1332 -2.2240 19 6 3.9754 -10.0505 -1.3814 20 6 3.4651 -0.9454 -1.3247 21 7 2.0226 -0.6981 -1.1952 22 6 1.1537 -1.1108 -2.1699 23 1 0.1398 -1.3787 -1.9113 24 6 1.5760 -1.1851 -3.4901 25 7 2.6866 -0.5836 -3.8606 26 14 0.5681 -2.1386 -4.7409 27 1 -0.7925 -1.5506 -4.8320 28 1 1.2287 -2.0646 -6.0688 29 1 0.4666 -3.5580 -4.3164 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 0.5140 0.8900 33 1 1.7659 -0.1640 2.1371 34 1 1.6029 -1.7236 1.2936 35 1 3.9377 -1.3474 2.0654 36 1 4.0059 0.1460 1.0995 37 1 2.5331 -3.1228 0.5329 38 1 3.2317 -5.7248 0.4745 39 1 2.2458 -5.3488 -0.9590 40 1 4.1120 -6.0615 -2.4285 41 1 5.0974 -6.4372 -0.9947 42 1 5.2366 -8.4508 -2.0900 43 1 2.5427 -8.9421 -3.4442 44 1 3.8020 -7.8060 -3.9880 45 1 5.3758 -9.6757 -4.3147 46 1 3.8851 -9.9630 -5.2442 47 1 5.7264 -10.9394 -2.2694 48 1 4.4806 -12.1091 -1.7708 49 1 4.4195 -10.0315 -0.3861 50 1 2.9099 -10.2659 -1.3019 51 1 3.6518 -1.5692 -2.1989 52 1 3.9904 0.0037 -1.4315 53 1 2.9818 -0.6358 -4.7831 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132417589.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:11 Heat of formation + Delta-G solvation = -143.339191 kcal Electronic energy + Delta-G solvation = -31299.528177 eV Core-core repulsion = 27170.350265 eV Total energy + Delta-G solvation = -4129.177912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.09537 -40.58349 -39.27759 -38.41796 -35.76528 -34.49587 -34.07232 -32.64040 -32.14975 -31.77897 -31.30122 -27.87200 -26.81863 -25.69503 -24.80010 -24.34381 -23.84788 -22.15432 -21.68938 -21.26348 -20.35860 -18.68477 -18.17427 -17.57406 -17.29138 -17.23889 -16.95883 -16.70377 -16.48408 -15.94598 -15.81876 -15.63884 -15.49729 -15.11734 -14.96827 -14.67330 -14.56364 -14.32306 -14.19752 -13.97396 -13.64009 -13.38622 -13.01426 -12.94865 -12.83857 -12.71072 -12.60078 -12.55626 -12.40955 -12.36915 -12.13443 -12.12426 -12.07663 -11.83561 -11.56383 -11.40521 -11.21267 -11.04865 -10.85864 -10.71047 -10.55226 -10.50934 -9.91518 -8.55899 -7.81955 -5.27393 1.40824 1.43544 1.48386 1.72308 2.08612 2.50171 2.78455 2.93328 3.33830 3.64376 3.68865 3.69937 3.79827 3.92794 3.98794 4.01736 4.04646 4.11683 4.16391 4.20770 4.22377 4.32079 4.46612 4.50793 4.54843 4.64854 4.67884 4.70851 4.74827 4.76418 4.78771 4.82866 4.84458 4.97840 5.00333 5.05583 5.07619 5.11271 5.13425 5.15860 5.28514 5.34214 5.57947 5.62635 5.71050 5.74717 5.76878 6.12573 6.17403 6.44890 6.70366 7.19504 7.39212 7.93873 8.44884 9.23083 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012367 B = 0.002942 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2263.482176 B = 9514.478020 C =10861.083637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.011 0.989 4 C -0.119 4.119 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.064 0.936 8 N -0.690 5.690 9 C 0.511 3.489 10 O -0.594 6.594 11 C -0.128 4.128 12 C 0.086 3.914 13 O -0.389 6.389 14 C 0.082 3.918 15 C -0.181 4.181 16 C 0.066 3.934 17 O -0.400 6.400 18 C 0.061 3.939 19 C -0.147 4.147 20 C 0.172 3.828 21 N -0.594 5.594 22 C -0.237 4.237 23 H 0.076 0.924 24 C -0.053 4.053 25 N -0.937 5.937 26 Si 0.948 3.052 27 H -0.272 1.272 28 H -0.304 1.304 29 H -0.281 1.281 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.409 0.591 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.106 0.894 47 H 0.064 0.936 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.072 0.928 51 H 0.046 0.954 52 H -0.007 1.007 53 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -15.803 11.799 19.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.048 3.952 3 H 0.029 0.971 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.082 0.918 8 N -0.340 5.340 9 C 0.298 3.702 10 O -0.476 6.476 11 C -0.167 4.167 12 C 0.009 3.991 13 O -0.308 6.308 14 C 0.024 3.976 15 C -0.220 4.220 16 C -0.011 4.011 17 O -0.319 6.319 18 C -0.015 4.015 19 C -0.184 4.184 20 C 0.045 3.955 21 N -0.317 5.317 22 C -0.368 4.368 23 H 0.094 0.906 24 C -0.248 4.248 25 N -0.584 5.584 26 Si 0.778 3.222 27 H -0.197 1.197 28 H -0.231 1.231 29 H -0.208 1.208 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.246 0.754 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.124 0.876 47 H 0.083 0.917 48 H 0.137 0.863 49 H 0.113 0.887 50 H 0.091 0.909 51 H 0.064 0.936 52 H 0.011 0.989 53 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.518 -15.835 11.232 19.577 hybrid contribution -0.260 0.499 -1.468 1.572 sum 2.259 -15.336 9.764 18.320 Atomic orbital electron populations 1.21725 0.94720 1.01409 1.00713 1.20777 0.94162 0.93148 0.87162 0.97142 1.21957 0.94700 1.01169 0.97917 1.21660 0.97304 0.99794 0.96026 1.21455 0.96263 0.82650 0.97448 0.91776 1.45722 1.29762 1.07816 1.50743 1.20807 0.83924 0.87288 0.78153 1.90664 1.27847 1.86199 1.42906 1.21389 1.00933 0.89859 1.04564 1.22008 0.95943 0.82445 0.98713 1.87830 1.53532 1.17621 1.71863 1.22288 0.95789 0.88764 0.90751 1.22737 1.02081 1.00196 0.96937 1.22602 0.99909 0.82658 0.95925 1.87915 1.80335 1.35360 1.28327 1.22768 0.97168 0.99886 0.81716 1.22284 1.03086 0.92410 1.00662 1.20842 0.84211 0.95144 0.95313 1.44234 1.02170 1.65554 1.19779 1.19380 0.95433 1.35660 0.86318 0.90622 1.25731 0.98920 1.01170 0.98949 1.70166 1.26020 1.46013 1.16192 0.85621 0.78718 0.79326 0.78566 1.19723 1.23095 1.20755 0.92835 0.94820 0.90655 0.89222 0.91587 0.89490 0.91174 0.75414 0.85194 0.88012 0.94866 0.92294 0.91398 0.91188 0.91481 0.91857 0.87618 0.91730 0.86327 0.88750 0.90946 0.93584 0.98863 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.25 7.95 71.98 0.57 -3.68 16 2 C 0.15 5.65 3.49 44.98 0.16 5.81 16 3 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 4 C -0.12 -3.20 5.22 30.68 0.16 -3.04 16 5 C -0.11 -3.06 5.58 30.63 0.17 -2.89 16 6 C 0.13 4.73 2.81 45.07 0.13 4.86 16 7 H 0.06 2.51 7.58 -2.39 -0.02 2.49 16 8 N -0.69 -22.91 4.92 -442.16 -2.17 -25.09 16 9 C 0.51 18.34 7.80 87.66 0.68 19.02 16 10 O -0.59 -26.62 15.65 -3.04 -0.05 -26.67 16 11 C -0.13 -3.51 6.07 29.85 0.18 -3.33 16 12 C 0.09 2.47 5.04 71.98 0.36 2.83 16 13 O -0.39 -10.24 10.00 -148.98 -1.49 -11.73 16 14 C 0.08 1.78 2.70 30.71 0.08 1.86 16 15 C -0.18 -4.04 5.76 30.68 0.18 -3.86 16 16 C 0.07 1.21 6.84 72.01 0.49 1.70 16 17 O -0.40 -7.99 10.77 -148.98 -1.60 -9.60 16 18 C 0.06 0.89 6.84 72.01 0.49 1.38 16 19 C -0.15 -2.49 5.79 30.69 0.18 -2.31 16 20 C 0.17 8.39 4.88 86.36 0.42 8.82 16 21 N -0.59 -27.93 2.91 -675.23 -1.96 -29.89 16 22 C -0.24 -12.46 8.57 84.03 0.72 -11.74 16 23 H 0.08 3.79 6.23 -2.91 -0.02 3.77 16 24 C -0.05 -2.99 4.94 84.86 0.42 -2.57 16 25 N -0.94 -57.62 11.23 21.65 0.24 -57.38 16 26 Si 0.95 46.11 29.58 68.60 2.03 48.14 16 27 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 28 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 29 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 30 H 0.05 1.75 7.42 -2.39 -0.02 1.73 16 31 H 0.03 1.27 7.64 -2.38 -0.02 1.26 16 32 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.68 6.41 -2.39 -0.02 1.66 16 35 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.41 11.33 6.78 -92.71 -0.63 10.70 16 38 H 0.13 2.65 8.14 -2.39 -0.02 2.63 16 39 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 40 H 0.03 1.11 7.95 -2.39 -0.02 1.09 16 41 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 42 H 0.07 1.39 7.79 -2.39 -0.02 1.37 16 43 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.62 7.99 -2.39 -0.02 1.60 16 45 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.32 8.14 -2.39 -0.02 1.31 16 50 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 51 H 0.05 2.70 6.15 -2.38 -0.01 2.69 16 52 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 53 H 0.24 14.81 8.31 -92.71 -0.77 14.04 16 Total: -1.00 -72.90 407.09 0.65 -72.25 By element: Atomic # 1 Polarization: 26.84 SS G_CDS: 0.25 Total: 27.09 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.40 Total: 12.87 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -3.89 Total: -112.36 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -3.14 Total: -47.99 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -72.90 0.65 -72.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132417589.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.087 kcal (2) G-P(sol) polarization free energy of solvation -72.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds