Wall clock time and date at job start Tue Mar 31 2020 23:32:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.58340 * 2 1 4 4 C 1.53193 * 109.58919 * 239.71937 * 2 1 3 5 5 C 1.53041 * 109.31583 * 185.57605 * 4 2 1 6 6 C 1.53042 * 109.53248 * 61.36366 * 5 4 2 7 7 H 1.09005 * 109.49837 * 58.62421 * 6 5 4 8 8 N 1.46507 * 109.49243 * 178.68488 * 6 5 4 9 9 C 1.34783 * 119.99816 * 205.00302 * 8 6 5 10 10 O 1.21277 * 119.99809 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99729 * 180.27696 * 9 8 6 12 12 C 1.53000 * 109.46819 * 179.72287 * 11 9 8 13 13 O 1.42895 * 109.46906 * 179.97438 * 12 11 9 14 14 C 1.42904 * 113.99708 * 179.97438 * 13 12 11 15 15 C 1.53173 * 109.54445 * 269.55485 * 14 13 12 16 16 C 1.53094 * 109.16376 * 183.15480 * 15 14 13 17 17 O 1.42904 * 109.41414 * 57.60983 * 16 15 14 18 18 C 1.42900 * 114.10031 * 298.84173 * 17 16 15 19 19 C 1.53091 * 109.41436 * 61.15579 * 18 17 16 20 20 C 1.53187 * 109.31513 * 298.63199 * 6 5 4 21 21 N 1.46926 * 108.77496 * 54.64290 * 20 6 5 22 22 C 1.36932 * 120.63636 * 126.36806 * 21 20 6 23 23 H 1.08005 * 120.00060 * 209.03636 * 22 21 20 24 24 C 1.38809 * 119.99837 * 29.03102 * 22 21 20 25 25 N 1.31617 * 120.00221 * 15.01494 * 24 22 21 26 26 Si 1.86807 * 120.00228 * 195.01565 * 24 22 21 27 27 H 1.48501 * 109.46757 * 60.00077 * 26 24 22 28 28 H 1.48502 * 109.47297 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46952 * 300.00485 * 26 24 22 30 30 H 1.08999 * 109.46925 * 180.27984 * 1 2 3 31 31 H 1.08995 * 109.47180 * 300.27960 * 1 2 3 32 32 H 1.09004 * 109.46763 * 60.28275 * 1 2 3 33 33 H 1.08998 * 109.49481 * 65.62050 * 4 2 1 34 34 H 1.09000 * 109.49653 * 305.53160 * 4 2 1 35 35 H 1.08995 * 109.45839 * 301.35010 * 5 4 2 36 36 H 1.08994 * 109.45742 * 181.38352 * 5 4 2 37 37 H 0.96992 * 120.00093 * 24.99498 * 8 6 5 38 38 H 1.08995 * 109.47059 * 299.71876 * 11 9 8 39 39 H 1.08995 * 109.47095 * 59.72408 * 11 9 8 40 40 H 1.09000 * 109.47310 * 299.99972 * 12 11 9 41 41 H 1.09004 * 109.47103 * 59.99566 * 12 11 9 42 42 H 1.08995 * 109.54863 * 29.82401 * 14 13 12 43 43 H 1.09000 * 109.52495 * 303.05666 * 15 14 13 44 44 H 1.09001 * 109.52181 * 63.24747 * 15 14 13 45 45 H 1.08997 * 109.48213 * 297.62402 * 16 15 14 46 46 H 1.09000 * 109.48133 * 177.59489 * 16 15 14 47 47 H 1.09007 * 109.47697 * 301.17997 * 18 17 16 48 48 H 1.08993 * 109.49391 * 181.14672 * 18 17 16 49 49 H 1.08994 * 109.52606 * 182.48631 * 19 18 17 50 50 H 1.09004 * 109.52187 * 62.29975 * 19 18 17 51 51 H 1.09003 * 109.58398 * 174.42252 * 20 6 5 52 52 H 1.08999 * 109.58971 * 294.85287 * 20 6 5 53 53 H 0.97006 * 120.00275 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5676 -0.8464 -1.1713 6 6 3.9569 -1.6657 0.0613 7 1 3.4988 -2.6530 0.0015 8 7 5.4143 -1.8054 0.1152 9 6 5.9678 -2.8491 0.7640 10 8 5.2593 -3.6724 1.3036 11 6 7.4670 -2.9893 0.8247 12 6 7.8299 -4.2454 1.6194 13 8 9.2515 -4.3787 1.6764 14 6 9.6990 -5.5264 2.4009 15 6 9.8941 -5.1579 3.8748 16 6 10.4482 -6.3708 4.6269 17 8 11.6744 -6.7856 4.0215 18 6 11.5446 -7.1872 2.6563 19 6 11.0345 -6.0072 1.8250 20 6 3.4651 -0.9486 1.3225 21 7 2.0226 -0.7011 1.1936 22 6 1.1537 -1.1162 2.1671 23 1 0.1360 -1.3707 1.9099 24 6 1.5808 -1.2102 3.4845 25 7 2.7038 -0.6324 3.8550 26 14 0.5617 -2.1567 4.7316 27 1 0.4325 -3.5701 4.2947 28 1 1.2305 -2.1079 6.0566 29 1 -0.7876 -1.5451 4.8346 30 1 -0.3633 -1.0277 0.0050 31 1 -0.3633 0.5181 0.8874 32 1 -0.3633 0.5095 -0.8926 33 1 1.7660 -0.1641 -2.1370 34 1 1.6030 -1.7236 -1.2936 35 1 4.0062 0.1488 -1.0991 36 1 3.9378 -1.3421 -2.0686 37 1 5.9809 -1.1468 -0.3161 38 1 7.8654 -3.0714 -0.1865 39 1 7.8943 -2.1140 1.3137 40 1 7.4314 -4.1634 2.6306 41 1 7.4025 -5.1208 1.1304 42 1 8.9585 -6.3218 2.3175 43 1 10.5972 -4.3286 3.9530 44 1 8.9368 -4.8671 4.3074 45 1 9.7267 -7.1866 4.5827 46 1 10.6293 -6.1016 5.6675 47 1 10.8374 -8.0138 2.5863 48 1 12.5153 -7.5063 2.2771 49 1 10.8928 -6.3237 0.7917 50 1 11.7605 -5.1949 1.8618 51 1 3.6519 -1.5746 2.1951 52 1 3.9903 0.0002 1.4317 53 1 3.0021 -0.6978 4.7758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132417590.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:32:15 Heat of formation + Delta-G solvation = -146.596716 kcal Electronic energy + Delta-G solvation = -30553.698428 eV Core-core repulsion = 26424.379259 eV Total energy + Delta-G solvation = -4129.319169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.07140 -40.56459 -39.31948 -38.44383 -36.00519 -34.66370 -34.07794 -32.64808 -32.14139 -31.81384 -31.33768 -27.78945 -26.87818 -25.60915 -24.77093 -24.33836 -23.86876 -22.18382 -21.53828 -21.29720 -20.75115 -18.58379 -18.33499 -17.53008 -17.42879 -17.26878 -16.96701 -16.72149 -16.63282 -15.93892 -15.83764 -15.63388 -15.43008 -15.16379 -15.04226 -14.71507 -14.64045 -14.33594 -14.22211 -14.05402 -13.50299 -13.39584 -13.09044 -12.98634 -12.76144 -12.75054 -12.65120 -12.57040 -12.36039 -12.29197 -12.13011 -12.12523 -11.99176 -11.83566 -11.66150 -11.41778 -11.39814 -11.14815 -10.85738 -10.70509 -10.54985 -10.53568 -10.05662 -8.62528 -7.85597 -5.31552 1.39706 1.44897 1.49131 1.65673 1.98955 2.48905 2.72548 2.92542 3.30679 3.65136 3.69577 3.69764 3.79581 3.93682 3.96437 4.01462 4.02412 4.09914 4.15385 4.22611 4.27664 4.32869 4.39571 4.47068 4.56078 4.62851 4.67168 4.70887 4.72010 4.76504 4.77702 4.82152 4.83141 4.89631 5.00473 5.01044 5.07337 5.08260 5.16201 5.18997 5.31108 5.35016 5.50112 5.54217 5.61552 5.69655 5.81466 6.11730 6.17849 6.40721 6.63472 7.15604 7.34496 7.90104 8.38866 9.19170 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013441 B = 0.002416 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.633108 B =11585.584444 C =13269.114022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.022 0.978 4 C -0.118 4.118 5 C -0.107 4.107 6 C 0.131 3.869 7 H 0.049 0.951 8 N -0.707 5.707 9 C 0.508 3.492 10 O -0.591 6.591 11 C -0.124 4.124 12 C 0.082 3.918 13 O -0.386 6.386 14 C 0.081 3.919 15 C -0.179 4.179 16 C 0.064 3.936 17 O -0.400 6.400 18 C 0.060 3.940 19 C -0.146 4.146 20 C 0.179 3.821 21 N -0.604 5.604 22 C -0.250 4.250 23 H 0.074 0.926 24 C -0.055 4.055 25 N -0.934 5.934 26 Si 0.957 3.043 27 H -0.286 1.286 28 H -0.296 1.296 29 H -0.269 1.269 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.415 0.585 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.036 0.964 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.062 0.938 48 H 0.118 0.882 49 H 0.092 0.908 50 H 0.074 0.926 51 H 0.043 0.957 52 H -0.003 1.003 53 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.050 -7.275 -10.500 20.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.040 0.960 4 C -0.158 4.158 5 C -0.145 4.145 6 C 0.024 3.976 7 H 0.068 0.932 8 N -0.359 5.359 9 C 0.295 3.705 10 O -0.471 6.471 11 C -0.163 4.163 12 C 0.005 3.995 13 O -0.306 6.306 14 C 0.023 3.977 15 C -0.217 4.217 16 C -0.013 4.013 17 O -0.319 6.319 18 C -0.016 4.016 19 C -0.184 4.184 20 C 0.051 3.949 21 N -0.328 5.328 22 C -0.381 4.381 23 H 0.092 0.908 24 C -0.250 4.250 25 N -0.580 5.580 26 Si 0.785 3.215 27 H -0.212 1.212 28 H -0.223 1.223 29 H -0.194 1.194 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.252 0.748 38 H 0.150 0.850 39 H 0.133 0.867 40 H 0.055 0.945 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.125 0.875 47 H 0.080 0.920 48 H 0.136 0.864 49 H 0.111 0.889 50 H 0.093 0.907 51 H 0.062 0.938 52 H 0.015 0.985 53 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.881 -7.697 -9.964 20.267 hybrid contribution -0.859 -0.110 1.253 1.523 sum 15.022 -7.807 -8.712 19.040 Atomic orbital electron populations 1.21737 0.94825 1.01109 1.01037 1.20812 0.94265 0.93391 0.86795 0.96039 1.21953 0.94739 1.00813 0.98266 1.21645 0.96966 1.00002 0.95906 1.21502 0.79523 0.98975 0.97587 0.93233 1.45876 1.07582 1.26926 1.55494 1.21050 0.91412 0.80790 0.77207 1.90731 1.65354 1.44220 1.46833 1.21395 0.89839 1.00129 1.04966 1.22034 0.80845 0.97534 0.99070 1.87819 1.20996 1.46686 1.75053 1.22285 0.96826 0.87666 0.90892 1.22716 1.02318 1.00342 0.96327 1.22618 0.86223 0.94845 0.97581 1.87914 1.32193 1.85487 1.26341 1.22763 1.03374 0.94864 0.80603 1.22277 0.95316 0.99663 1.01154 1.20791 0.83672 0.95306 0.95097 1.44322 1.02612 1.65533 1.20318 1.19442 0.95181 1.36646 0.86804 0.90840 1.25792 0.99077 1.01133 0.98957 1.70151 1.25035 1.46379 1.16446 0.85495 0.78731 0.78936 0.78298 1.21249 1.22280 1.19403 0.93590 0.94400 0.90244 0.88620 0.93023 0.90810 0.89551 0.74769 0.85003 0.86672 0.94523 0.92928 0.91746 0.90803 0.91265 0.92168 0.87497 0.91978 0.86362 0.88909 0.90691 0.93825 0.98456 0.94689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 7.94 71.98 0.57 -4.08 16 2 C 0.15 6.03 3.50 44.98 0.16 6.19 16 3 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 4 C -0.12 -3.63 5.37 30.67 0.16 -3.46 16 5 C -0.11 -3.08 5.35 30.62 0.16 -2.91 16 6 C 0.13 4.98 2.60 45.07 0.12 5.10 16 7 H 0.05 2.23 7.58 -2.38 -0.02 2.21 16 8 N -0.71 -21.66 5.08 -442.15 -2.25 -23.90 16 9 C 0.51 17.07 7.80 87.66 0.68 17.76 16 10 O -0.59 -26.65 15.64 -3.02 -0.05 -26.69 16 11 C -0.12 -2.90 6.07 29.85 0.18 -2.72 16 12 C 0.08 2.15 5.04 71.98 0.36 2.52 16 13 O -0.39 -9.12 10.00 -148.98 -1.49 -10.61 16 14 C 0.08 1.62 2.70 30.71 0.08 1.71 16 15 C -0.18 -3.58 5.76 30.68 0.18 -3.40 16 16 C 0.06 1.09 6.84 72.01 0.49 1.59 16 17 O -0.40 -7.55 10.77 -148.98 -1.60 -9.16 16 18 C 0.06 0.83 6.84 72.01 0.49 1.32 16 19 C -0.15 -2.28 5.79 30.69 0.18 -2.10 16 20 C 0.18 8.89 4.86 86.36 0.42 9.31 16 21 N -0.60 -30.57 2.99 -675.23 -2.02 -32.59 16 22 C -0.25 -14.07 8.61 84.03 0.72 -13.34 16 23 H 0.07 3.98 6.20 -2.91 -0.02 3.96 16 24 C -0.05 -3.21 4.96 84.86 0.42 -2.78 16 25 N -0.93 -58.00 11.14 21.65 0.24 -57.76 16 26 Si 0.96 47.64 29.58 68.60 2.03 49.67 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 28 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 29 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 30 H 0.04 1.70 7.40 -2.39 -0.02 1.68 16 31 H 0.04 1.50 7.66 -2.39 -0.02 1.49 16 32 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 33 H 0.10 2.22 8.14 -2.39 -0.02 2.21 16 34 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.42 9.03 8.60 -92.71 -0.80 8.23 16 38 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.04 1.12 7.95 -2.39 -0.02 1.10 16 41 H 0.05 1.41 8.04 -2.39 -0.02 1.39 16 42 H 0.06 1.26 7.79 -2.39 -0.02 1.24 16 43 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 1.49 7.99 -2.39 -0.02 1.48 16 45 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 48 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 51 H 0.04 2.63 6.06 -2.39 -0.01 2.61 16 52 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 53 H 0.24 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -77.20 410.43 0.33 -76.87 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.08 Total: 23.48 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 5.39 Total: 10.69 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.02 Total: -114.25 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -3.14 Total: -46.46 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -77.20 0.33 -76.87 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132417590.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.728 kcal (2) G-P(sol) polarization free energy of solvation -77.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds