Wall clock time and date at job start Tue Mar 31 2020 23:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.46135 * 2 1 4 4 C 1.53040 * 109.44989 * 119.97290 * 2 1 3 5 5 C 1.52760 * 109.38219 * 181.25300 * 4 2 1 6 6 N 1.46921 * 109.00903 * 305.58856 * 5 4 2 7 7 C 1.34780 * 120.63059 * 233.58159 * 6 5 4 8 8 O 1.21280 * 120.00423 * 179.71638 * 7 6 5 9 9 C 1.50701 * 119.99795 * 359.72315 * 7 6 5 10 10 O 1.42903 * 109.46878 * 179.97438 * 9 7 6 11 11 C 1.42899 * 113.99629 * 179.97438 * 10 9 7 12 12 C 1.53184 * 109.54371 * 269.82464 * 11 10 9 13 13 C 1.53102 * 109.15405 * 183.24432 * 12 11 10 14 14 O 1.42901 * 109.49424 * 57.47548 * 13 12 11 15 15 C 1.42908 * 114.09233 * 298.88860 * 14 13 12 16 16 C 1.53088 * 109.41649 * 61.15749 * 15 14 13 17 17 C 1.46926 * 118.74177 * 53.30762 * 6 5 4 18 18 C 1.53042 * 109.46053 * 240.03297 * 2 1 3 19 19 H 1.09000 * 109.52420 * 298.59759 * 18 2 1 20 20 C 1.53007 * 109.49782 * 58.67395 * 18 2 1 21 21 N 1.46501 * 109.47045 * 184.84048 * 20 18 2 22 22 C 1.36937 * 119.99910 * 180.02562 * 21 20 18 23 23 H 1.08009 * 119.99550 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00244 * 179.97438 * 22 21 20 25 25 N 1.31618 * 120.00284 * 179.97438 * 24 22 21 26 26 Si 1.86801 * 119.99849 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47154 * 90.00013 * 26 24 22 28 28 H 1.48502 * 109.47207 * 209.99829 * 26 24 22 29 29 H 1.48502 * 109.47339 * 330.00390 * 26 24 22 30 30 H 1.09007 * 109.47332 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47361 * 299.96642 * 1 2 3 32 32 H 1.08999 * 109.47492 * 59.97173 * 1 2 3 33 33 H 1.09000 * 109.49238 * 301.32496 * 4 2 1 34 34 H 1.08995 * 109.49705 * 61.42555 * 4 2 1 35 35 H 1.08996 * 109.51231 * 185.70448 * 5 4 2 36 36 H 1.09004 * 109.43180 * 65.41890 * 5 4 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 9 7 6 38 38 H 1.09001 * 109.47380 * 59.99809 * 9 7 6 39 39 H 1.09003 * 109.54519 * 30.00241 * 11 10 9 40 40 H 1.09002 * 109.51698 * 303.05558 * 12 11 10 41 41 H 1.08993 * 109.52300 * 63.24482 * 12 11 10 42 42 H 1.08998 * 109.40750 * 297.48714 * 13 12 11 43 43 H 1.09005 * 109.48798 * 177.50713 * 13 12 11 44 44 H 1.09000 * 109.47737 * 301.16701 * 15 14 13 45 45 H 1.09004 * 109.48609 * 181.14326 * 15 14 13 46 46 H 1.09002 * 109.52383 * 182.49064 * 16 15 14 47 47 H 1.08993 * 109.57934 * 62.32598 * 16 15 14 48 48 H 1.09005 * 109.58410 * 66.43252 * 17 6 5 49 49 H 1.08998 * 109.58968 * 186.85581 * 17 6 5 50 50 H 1.08995 * 109.47018 * 304.84199 * 20 18 2 51 51 H 1.08999 * 109.46836 * 64.84051 * 20 18 2 52 52 H 0.96994 * 120.00097 * 359.97438 * 21 20 18 53 53 H 0.97001 * 119.99911 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0395 -0.7209 1.2501 5 6 3.5668 -0.6928 1.2643 6 7 4.0675 -1.2493 0.0001 7 6 4.9610 -2.2584 0.0001 8 8 5.3628 -2.7126 -1.0501 9 6 5.4605 -2.8225 1.3053 10 8 6.3913 -3.8749 1.0441 11 6 6.9286 -4.4809 2.2214 12 6 8.2049 -3.7443 2.6401 13 6 8.8170 -4.4498 3.8532 14 8 9.0789 -5.8164 3.5282 15 6 7.9142 -6.5659 3.1760 16 6 7.2671 -5.9470 1.9343 17 6 3.5713 -0.6889 -1.2641 18 6 2.0398 -0.7208 -1.2501 19 1 1.6975 -1.7556 -1.2390 20 6 1.5029 -0.0187 -2.4991 21 7 1.8951 -0.7750 -3.6909 22 6 1.5252 -0.3345 -4.9337 23 1 0.9440 0.5702 -5.0350 24 6 1.8973 -1.0507 -6.0630 25 7 1.5413 -0.6276 -7.2575 26 14 2.9031 -2.6150 -5.8876 27 1 1.9899 -3.7784 -5.7548 28 1 3.7578 -2.7912 -7.0892 29 1 3.7612 -2.5189 -4.6794 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5133 0.8903 32 1 -0.3634 0.5143 -0.8897 33 1 1.6569 -0.2208 2.1398 34 1 1.6973 -1.7557 1.2382 35 1 3.9342 -1.2913 2.0979 36 1 3.9096 0.3364 1.3717 37 1 5.9523 -2.0354 1.8768 38 1 4.6196 -3.2152 1.8769 39 1 6.1957 -4.4268 3.0264 40 1 8.9183 -3.7547 1.8160 41 1 7.9622 -2.7141 2.9001 42 1 8.1198 -4.4022 4.6897 43 1 9.7492 -3.9565 4.1286 44 1 7.2052 -6.5461 4.0037 45 1 8.1959 -7.5972 2.9633 46 1 6.3542 -6.4903 1.6901 47 1 7.9600 -6.0032 1.0949 48 1 3.9144 0.3406 -1.3672 49 1 3.9416 -1.2848 -2.0983 50 1 0.4157 0.0369 -2.4455 51 1 1.9159 0.9884 -2.5555 52 1 2.4174 -1.5872 -3.5999 53 1 1.8016 -1.1280 -8.0466 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133145592.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:20 Heat of formation + Delta-G solvation = -147.407557 kcal Electronic energy + Delta-G solvation = -30830.854786 eV Core-core repulsion = 26701.500456 eV Total energy + Delta-G solvation = -4129.354330 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.50757 -40.55452 -39.35620 -38.16995 -36.80021 -35.14418 -33.74447 -33.55761 -32.12357 -31.98873 -30.01571 -28.78570 -27.05178 -25.23967 -24.65806 -24.56521 -24.20788 -22.57806 -21.52074 -21.36055 -20.11847 -19.65258 -18.58542 -17.72213 -17.33864 -17.26160 -16.90328 -16.77321 -16.55565 -15.94696 -15.87129 -15.80884 -15.38061 -15.31075 -15.01582 -14.72357 -14.53116 -14.48495 -14.28486 -14.16970 -13.89995 -13.73422 -13.40150 -13.28651 -13.18647 -12.85431 -12.66666 -12.63468 -12.46122 -12.29160 -12.26245 -12.02367 -11.92672 -11.91668 -11.80671 -11.40185 -11.33288 -11.23505 -11.04725 -10.79849 -10.68168 -10.57407 -9.71671 -9.32422 -8.09495 -5.40600 1.28893 1.33180 1.39698 1.48661 1.63496 2.39762 2.70104 2.96395 3.22673 3.41991 3.51433 3.70878 3.75788 3.78338 3.80441 3.94705 3.98963 4.03904 4.05199 4.06968 4.20861 4.25322 4.25734 4.34487 4.40021 4.50654 4.54607 4.58424 4.65642 4.72401 4.74772 4.77932 4.80644 4.81026 4.92935 4.96298 5.02999 5.06250 5.09228 5.12555 5.17148 5.20230 5.24602 5.43237 5.50824 5.57245 5.71122 6.06801 6.15981 6.22932 6.38102 7.01822 7.10205 7.79798 7.95832 9.12126 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.002677 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.602913 B =10456.031091 C =12274.786809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.084 0.916 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.605 5.605 7 C 0.498 3.502 8 O -0.586 6.586 9 C 0.053 3.947 10 O -0.393 6.393 11 C 0.083 3.917 12 C -0.178 4.178 13 C 0.063 3.937 14 O -0.407 6.407 15 C 0.067 3.933 16 C -0.157 4.157 17 C 0.122 3.878 18 C -0.092 4.092 19 H 0.058 0.942 20 C 0.158 3.842 21 N -0.763 5.763 22 C -0.227 4.227 23 H 0.066 0.934 24 C -0.055 4.055 25 N -0.978 5.978 26 Si 0.941 3.059 27 H -0.277 1.277 28 H -0.292 1.292 29 H -0.272 1.272 30 H 0.048 0.952 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.114 0.886 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.106 0.894 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.084 0.916 47 H 0.054 0.946 48 H 0.075 0.925 49 H 0.047 0.953 50 H 0.041 0.959 51 H 0.029 0.971 52 H 0.360 0.640 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -4.430 36.245 37.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.161 4.161 5 C -0.023 4.023 6 N -0.339 5.339 7 C 0.287 3.713 8 O -0.465 6.465 9 C -0.026 4.026 10 O -0.313 6.313 11 C 0.026 3.974 12 C -0.216 4.216 13 C -0.014 4.014 14 O -0.326 6.326 15 C -0.009 4.009 16 C -0.195 4.195 17 C -0.001 4.001 18 C -0.112 4.112 19 H 0.076 0.924 20 C 0.032 3.968 21 N -0.408 5.408 22 C -0.358 4.358 23 H 0.084 0.916 24 C -0.247 4.247 25 N -0.629 5.629 26 Si 0.770 3.230 27 H -0.203 1.203 28 H -0.218 1.218 29 H -0.198 1.198 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.110 0.890 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.112 0.888 42 H 0.094 0.906 43 H 0.124 0.876 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.103 0.897 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.047 0.953 52 H 0.193 0.807 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.527 -4.658 35.398 36.707 hybrid contribution 0.253 -0.714 -1.372 1.567 sum 8.780 -5.372 34.026 35.549 Atomic orbital electron populations 1.21869 0.94383 1.01803 1.02366 1.21091 0.96369 0.99758 0.92581 0.89735 1.21923 0.94333 1.01503 0.98341 1.22142 0.95055 1.01149 0.83966 1.48224 1.42409 1.34732 1.08542 1.21214 0.78920 0.79379 0.91753 1.90751 1.58987 1.60856 1.35942 1.22424 0.94778 0.92397 0.92991 1.88083 1.60282 1.50617 1.32269 1.22388 0.95100 0.92564 0.87371 1.22743 0.97738 1.01388 0.99694 1.22707 1.02296 0.81126 0.95229 1.87930 1.33258 1.23022 1.88383 1.22675 0.87527 0.95854 0.94871 1.22328 1.02178 0.94938 1.00044 1.21452 0.94130 0.98569 0.85977 1.21640 0.93759 0.99993 0.95821 0.92379 1.20950 0.97739 0.93991 0.84166 1.42899 1.65752 1.29395 1.02771 1.19078 1.26435 1.06613 0.83724 0.91605 1.25304 1.02508 1.01909 0.94987 1.69838 1.52995 1.42360 0.97745 0.85622 0.79189 0.81263 0.76923 1.20334 1.21816 1.19754 0.93321 0.90184 0.93510 0.86745 0.91903 0.86531 0.89003 0.86854 0.86846 0.88698 0.92729 0.88756 0.90615 0.87567 0.90603 0.87506 0.89745 0.92666 0.90672 0.93389 0.94152 0.95344 0.80739 0.93264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.70 8.81 71.98 0.63 -2.07 16 2 C -0.08 -1.48 2.23 -10.77 -0.02 -1.50 16 3 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.12 -1.42 5.34 30.53 0.16 -1.25 16 5 C 0.10 1.10 6.31 86.22 0.54 1.65 16 6 N -0.61 -14.38 2.98 -819.75 -2.44 -16.82 16 7 C 0.50 14.29 7.78 87.66 0.68 14.97 16 8 O -0.59 -25.03 15.91 16.01 0.25 -24.78 16 9 C 0.05 0.90 4.58 71.24 0.33 1.23 16 10 O -0.39 -9.31 9.53 -129.94 -1.24 -10.55 16 11 C 0.08 1.23 2.69 30.72 0.08 1.31 16 12 C -0.18 -2.32 5.77 30.69 0.18 -2.14 16 13 C 0.06 0.64 6.84 72.02 0.49 1.13 16 14 O -0.41 -6.38 10.77 -148.98 -1.60 -7.98 16 15 C 0.07 0.78 6.84 72.01 0.49 1.27 16 16 C -0.16 -2.49 5.79 30.68 0.18 -2.31 16 17 C 0.12 3.85 5.52 86.36 0.48 4.33 16 18 C -0.09 -2.71 1.92 -10.71 -0.02 -2.73 16 19 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 20 C 0.16 6.02 5.41 86.38 0.47 6.49 16 21 N -0.76 -38.19 5.18 -343.44 -1.78 -39.97 16 22 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16 23 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 24 C -0.06 -3.44 5.50 84.86 0.47 -2.98 16 25 N -0.98 -65.08 13.97 21.65 0.30 -64.78 16 26 Si 0.94 50.59 27.73 68.60 1.90 52.49 16 27 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 28 H -0.29 -15.64 7.11 99.48 0.71 -14.93 16 29 H -0.27 -14.46 6.52 99.48 0.65 -13.81 16 30 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.05 1.05 6.30 -2.39 -0.02 1.03 16 33 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 0.48 5.93 -2.39 -0.01 0.47 16 36 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.11 1.08 7.78 -2.39 -0.02 1.06 16 38 H 0.11 1.11 7.63 -2.39 -0.02 1.09 16 39 H 0.10 0.78 7.79 -2.39 -0.02 0.76 16 40 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.09 0.84 7.97 -2.39 -0.02 0.82 16 42 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.11 0.86 8.14 -2.38 -0.02 0.85 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 47 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.08 2.25 8.14 -2.38 -0.02 2.23 16 49 H 0.05 2.02 6.20 -2.39 -0.01 2.00 16 50 H 0.04 1.53 6.15 -2.39 -0.01 1.52 16 51 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 52 H 0.36 18.31 4.75 -92.71 -0.44 17.86 16 53 H 0.26 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -88.66 405.77 1.80 -86.86 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: 0.38 Total: 20.84 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: 6.02 Total: 4.68 kcal Atomic # 7 Polarization: -117.66 SS G_CDS: -3.92 Total: -121.58 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.59 Total: -43.30 kcal Atomic # 14 Polarization: 50.59 SS G_CDS: 1.90 Total: 52.49 kcal Total: -88.66 1.80 -86.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133145592.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.544 kcal (2) G-P(sol) polarization free energy of solvation -88.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds