Wall clock time and date at job start Tue Mar 31 2020 23:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.44927 * 2 1 4 4 C 1.53036 * 109.46234 * 240.02682 * 2 1 3 5 5 C 1.53187 * 109.33909 * 301.36304 * 4 2 1 6 6 N 1.46931 * 108.77858 * 305.34763 * 5 4 2 7 7 C 1.34772 * 120.63173 * 233.63340 * 6 5 4 8 8 O 1.21277 * 119.99811 * 179.97438 * 7 6 5 9 9 C 1.50704 * 120.00006 * 359.97438 * 7 6 5 10 10 O 1.42902 * 109.47004 * 180.02562 * 9 7 6 11 11 C 1.42896 * 113.99898 * 180.02562 * 10 9 7 12 12 C 1.53173 * 109.54403 * 269.82351 * 11 10 9 13 13 C 1.53109 * 109.15924 * 183.24421 * 12 11 10 14 14 O 1.42900 * 109.48740 * 57.46835 * 13 12 11 15 15 C 1.42901 * 114.10217 * 298.89509 * 14 13 12 16 16 C 1.53092 * 109.41530 * 61.15632 * 15 14 13 17 17 C 1.46925 * 118.73466 * 53.60925 * 6 5 4 18 18 C 1.53109 * 109.44561 * 120.00685 * 2 1 3 19 19 H 1.09001 * 109.48443 * 178.60839 * 18 2 1 20 20 C 1.52994 * 109.51765 * 298.67744 * 18 2 1 21 21 N 1.46506 * 109.47245 * 184.87235 * 20 18 2 22 22 C 1.36940 * 120.00039 * 180.02562 * 21 20 18 23 23 H 1.08001 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99863 * 179.97438 * 22 21 20 25 25 N 1.31611 * 119.99920 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99907 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47191 * 59.99818 * 26 24 22 28 28 H 1.48494 * 109.47010 * 180.02562 * 26 24 22 29 29 H 1.48510 * 109.46967 * 299.99981 * 26 24 22 30 30 H 1.08996 * 109.47644 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47393 * 299.97185 * 1 2 3 32 32 H 1.09003 * 109.47046 * 59.97206 * 1 2 3 33 33 H 1.09002 * 109.49886 * 181.39426 * 4 2 1 34 34 H 1.09000 * 109.49395 * 61.32903 * 4 2 1 35 35 H 1.09004 * 109.58908 * 65.13475 * 5 4 2 36 36 H 1.09003 * 109.58748 * 185.41538 * 5 4 2 37 37 H 1.09001 * 109.47103 * 299.99900 * 9 7 6 38 38 H 1.08999 * 109.47147 * 60.00424 * 9 7 6 39 39 H 1.08999 * 109.54489 * 30.00140 * 11 10 9 40 40 H 1.08998 * 109.52505 * 303.05660 * 12 11 10 41 41 H 1.09000 * 109.52506 * 63.24954 * 12 11 10 42 42 H 1.09008 * 109.40153 * 297.49424 * 13 12 11 43 43 H 1.08998 * 109.49538 * 177.50774 * 13 12 11 44 44 H 1.09002 * 109.47939 * 301.17035 * 15 14 13 45 45 H 1.09004 * 109.49199 * 181.14404 * 15 14 13 46 46 H 1.09003 * 109.52132 * 182.48962 * 16 15 14 47 47 H 1.08999 * 109.57541 * 62.33085 * 16 15 14 48 48 H 1.08995 * 109.58986 * 66.17814 * 17 6 5 49 49 H 1.08997 * 109.58553 * 186.46513 * 17 6 5 50 50 H 1.09004 * 109.47605 * 304.87435 * 20 18 2 51 51 H 1.09001 * 109.47420 * 64.87155 * 20 18 2 52 52 H 0.96998 * 119.99668 * 0.02562 * 21 20 18 53 53 H 0.96998 * 120.00040 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 1.4996 -2.1542 -1.2648 6 7 1.8625 -2.8096 -0.0008 7 6 2.5164 -3.9881 -0.0013 8 8 2.8107 -4.5187 1.0487 9 6 2.8818 -4.6465 -1.3068 10 8 3.5629 -5.8754 -1.0461 11 6 3.9562 -6.5829 -2.2237 12 6 2.8366 -7.5398 -2.6445 13 6 3.2986 -8.3511 -3.8580 14 8 4.4993 -9.0542 -3.5323 15 6 5.5940 -8.2067 -3.1781 16 6 5.2251 -7.3914 -1.9359 17 6 1.4994 -2.1555 1.2637 18 6 2.0397 -0.7220 1.2502 19 1 3.1294 -0.7441 1.2385 20 6 1.5573 0.0173 2.4998 21 7 2.1403 -0.6051 3.6911 22 6 1.8489 -0.1104 4.9343 23 1 1.1897 0.7389 5.0365 24 6 2.4009 -0.7005 6.0630 25 7 3.2047 -1.7352 5.9383 26 14 2.0029 -0.0260 7.7589 27 1 0.5384 -0.1057 7.9921 28 1 2.7130 -0.8260 8.7889 29 1 2.4413 1.3903 7.8437 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5143 -0.8898 33 1 3.1296 -0.7429 -1.2381 34 1 1.6963 -0.1933 -2.1397 35 1 0.4146 -2.1348 -1.3679 36 1 1.9363 -2.7007 -2.1007 37 1 1.9757 -4.8478 -1.8783 38 1 3.5322 -3.9843 -1.8781 39 1 4.1506 -5.8732 -3.0278 40 1 2.6073 -8.2166 -1.8215 41 1 1.9466 -6.9670 -2.9050 42 1 3.4874 -7.6770 -4.6936 43 1 2.5230 -9.0650 -4.1350 44 1 5.8128 -7.5309 -4.0048 45 1 6.4719 -8.8166 -2.9650 46 1 6.0417 -6.7124 -1.6902 47 1 5.0459 -8.0643 -1.0974 48 1 0.4145 -2.1360 1.3667 49 1 1.9359 -2.7049 2.0978 50 1 1.8670 1.0611 2.4468 51 1 0.4702 -0.0366 2.5569 52 1 2.7327 -1.3677 3.5991 53 1 3.5901 -2.1478 6.7270 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133145593.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:24 Heat of formation + Delta-G solvation = -146.944429 kcal Electronic energy + Delta-G solvation = -30826.060627 eV Core-core repulsion = 26696.726380 eV Total energy + Delta-G solvation = -4129.334247 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.56461 -40.56212 -39.40230 -38.14533 -36.65362 -34.93693 -33.57984 -33.47019 -32.10769 -31.62967 -29.60935 -28.56545 -26.83513 -25.67592 -25.07476 -24.86081 -24.53021 -22.57982 -21.48946 -21.02075 -19.45228 -18.93331 -18.58016 -17.71327 -17.32205 -17.21724 -16.86417 -16.81334 -16.48941 -16.13330 -15.82718 -15.72521 -15.60962 -15.34339 -15.04710 -14.73735 -14.54257 -14.41824 -14.25182 -13.89597 -13.83543 -13.65240 -13.26987 -13.05626 -12.94610 -12.84140 -12.62751 -12.46224 -12.44395 -12.25538 -12.17935 -12.02544 -11.91918 -11.90933 -11.72900 -11.38907 -11.34862 -11.21622 -10.93544 -10.78999 -10.66383 -10.55585 -9.61043 -9.02606 -7.95931 -5.26866 1.43011 1.47800 1.53114 1.54178 1.67442 2.53968 2.72743 2.97894 3.36595 3.45646 3.69410 3.72717 3.79350 3.83246 3.85594 3.96300 4.04934 4.06999 4.09502 4.19179 4.22432 4.26876 4.30563 4.37503 4.42181 4.52143 4.53303 4.57376 4.67120 4.72223 4.76093 4.78232 4.82572 4.83819 4.92168 5.00129 5.04423 5.10141 5.11181 5.18590 5.20316 5.25823 5.31083 5.41524 5.46026 5.50895 5.61786 6.09592 6.24200 6.24309 6.42650 7.15736 7.29310 8.06440 8.28260 9.27432 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013072 B = 0.002411 C = 0.002103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.389267 B =11612.415793 C =13311.765228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.123 4.123 5 C 0.095 3.905 6 N -0.604 5.604 7 C 0.496 3.504 8 O -0.585 6.585 9 C 0.055 3.945 10 O -0.394 6.394 11 C 0.082 3.918 12 C -0.178 4.178 13 C 0.063 3.937 14 O -0.406 6.406 15 C 0.068 3.932 16 C -0.158 4.158 17 C 0.130 3.870 18 C -0.089 4.089 19 H 0.048 0.952 20 C 0.159 3.841 21 N -0.749 5.749 22 C -0.247 4.247 23 H 0.080 0.920 24 C -0.082 4.082 25 N -0.974 5.974 26 Si 0.979 3.021 27 H -0.275 1.275 28 H -0.298 1.298 29 H -0.274 1.274 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.107 0.893 46 H 0.083 0.917 47 H 0.054 0.946 48 H 0.073 0.927 49 H 0.042 0.958 50 H 0.024 0.976 51 H 0.030 0.970 52 H 0.369 0.631 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.645 -4.829 -31.870 32.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.098 0.902 4 C -0.161 4.161 5 C -0.025 4.025 6 N -0.338 5.338 7 C 0.285 3.715 8 O -0.464 6.464 9 C -0.024 4.024 10 O -0.313 6.313 11 C 0.025 3.975 12 C -0.216 4.216 13 C -0.013 4.013 14 O -0.326 6.326 15 C -0.008 4.008 16 C -0.196 4.196 17 C 0.007 3.993 18 C -0.109 4.109 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.392 5.392 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.807 3.193 27 H -0.201 1.201 28 H -0.224 1.224 29 H -0.199 1.199 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.133 0.867 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.094 0.906 43 H 0.125 0.875 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.102 0.898 47 H 0.073 0.927 48 H 0.091 0.909 49 H 0.061 0.939 50 H 0.042 0.958 51 H 0.048 0.952 52 H 0.200 0.800 53 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.534 -5.260 -31.046 31.591 hybrid contribution 0.236 0.200 1.925 1.949 sum -2.299 -5.060 -29.122 29.647 Atomic orbital electron populations 1.21961 0.94003 1.02125 1.02549 1.21088 0.96931 0.99322 0.92569 0.90219 1.21958 1.00889 0.94872 0.98398 1.22251 1.02234 0.93976 0.84047 1.48200 1.56740 1.20394 1.08481 1.21245 0.77296 0.81211 0.91767 1.90775 1.54917 1.64688 1.36010 1.22408 0.99926 0.87170 0.92927 1.88093 1.76608 1.34291 1.32297 1.22391 0.94233 0.93502 0.87346 1.22745 0.99670 0.99433 0.99726 1.22709 0.86887 0.96542 0.95169 1.87924 1.21265 1.35047 1.88316 1.22669 0.89570 0.93820 0.94788 1.22336 0.97530 0.99597 1.00096 1.21339 0.99461 0.92731 0.85739 1.21555 0.99246 0.94130 0.95964 0.93355 1.20886 0.95981 0.94824 0.85097 1.42704 1.57030 1.37355 1.02096 1.19645 1.22549 1.10649 0.84989 0.90204 1.25702 1.00567 0.98959 1.02126 1.69872 1.37317 1.25954 1.29276 0.85137 0.77682 0.77506 0.78984 1.20098 1.22397 1.19949 0.92566 0.93615 0.89858 0.92065 0.86652 0.88881 0.86623 0.86825 0.86951 0.88721 0.92739 0.88750 0.90598 0.87494 0.90580 0.87467 0.89829 0.92689 0.90891 0.93891 0.95817 0.95196 0.79961 0.94141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.11 71.98 0.58 -2.16 16 2 C -0.08 -1.69 2.71 -10.75 -0.03 -1.72 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.72 5.62 30.67 0.17 -1.54 16 5 C 0.10 1.33 5.87 86.36 0.51 1.84 16 6 N -0.60 -16.28 2.97 -818.91 -2.43 -18.72 16 7 C 0.50 15.89 7.78 87.66 0.68 16.57 16 8 O -0.58 -27.43 15.91 16.02 0.25 -27.17 16 9 C 0.05 1.07 4.58 71.24 0.33 1.40 16 10 O -0.39 -10.31 9.53 -129.94 -1.24 -11.55 16 11 C 0.08 1.38 2.69 30.71 0.08 1.46 16 12 C -0.18 -2.60 5.77 30.69 0.18 -2.42 16 13 C 0.06 0.72 6.84 72.02 0.49 1.21 16 14 O -0.41 -6.84 10.77 -148.98 -1.60 -8.44 16 15 C 0.07 0.88 6.84 72.01 0.49 1.37 16 16 C -0.16 -2.79 5.79 30.69 0.18 -2.62 16 17 C 0.13 4.61 5.05 86.36 0.44 5.05 16 18 C -0.09 -2.94 2.15 -10.69 -0.02 -2.97 16 19 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 20 C 0.16 6.52 5.19 86.38 0.45 6.97 16 21 N -0.75 -41.02 5.38 -343.44 -1.85 -42.87 16 22 C -0.25 -14.56 9.99 84.03 0.84 -13.72 16 23 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 24 C -0.08 -5.00 5.50 84.86 0.47 -4.53 16 25 N -0.97 -64.66 13.06 21.65 0.28 -64.38 16 26 Si 0.98 48.57 29.55 68.60 2.03 50.60 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 28 H -0.30 -14.95 7.11 99.48 0.71 -14.25 16 29 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 30 H 0.06 1.05 4.98 -2.39 -0.01 1.04 16 31 H 0.04 1.01 6.58 -2.39 -0.02 1.00 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.09 1.02 6.69 -2.38 -0.02 1.00 16 36 H 0.12 0.76 5.95 -2.39 -0.01 0.75 16 37 H 0.11 1.34 7.77 -2.39 -0.02 1.32 16 38 H 0.11 1.40 7.64 -2.39 -0.02 1.38 16 39 H 0.09 0.95 7.79 -2.39 -0.02 0.93 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.09 0.98 7.97 -2.39 -0.02 0.96 16 42 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 44 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 2.46 6.69 -2.39 -0.02 2.44 16 49 H 0.04 2.05 6.21 -2.39 -0.01 2.04 16 50 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 51 H 0.03 1.20 6.73 -2.39 -0.02 1.19 16 52 H 0.37 22.33 6.90 -92.71 -0.64 21.69 16 53 H 0.25 16.12 8.31 -92.71 -0.77 15.35 16 Total: -1.00 -89.01 402.86 1.53 -87.48 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: 0.26 Total: 30.84 kcal Atomic # 6 Polarization: -1.63 SS G_CDS: 5.83 Total: 4.21 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -4.00 Total: -125.96 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -2.59 Total: -47.16 kcal Atomic # 14 Polarization: 48.57 SS G_CDS: 2.03 Total: 50.60 kcal Total: -89.01 1.53 -87.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133145593.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.464 kcal (2) G-P(sol) polarization free energy of solvation -89.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds