Wall clock time and date at job start Tue Mar 31 2020 23:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.46409 * 2 1 4 4 C 1.53044 * 109.46239 * 119.98187 * 2 1 3 5 5 C 1.53188 * 109.31066 * 58.63513 * 4 2 1 6 6 N 1.46924 * 108.77925 * 54.63925 * 5 4 2 7 7 C 1.34779 * 120.63372 * 126.36484 * 6 5 4 8 8 O 1.21273 * 120.00272 * 180.02562 * 7 6 5 9 9 C 1.50706 * 119.99729 * 359.97438 * 7 6 5 10 10 O 1.42895 * 109.46975 * 180.02562 * 9 7 6 11 11 C 1.42900 * 114.00123 * 180.02562 * 10 9 7 12 12 C 1.53175 * 109.54384 * 150.00104 * 11 10 9 13 13 C 1.53092 * 109.16344 * 176.84941 * 12 11 10 14 14 O 1.42905 * 109.41215 * 302.38824 * 13 12 11 15 15 C 1.42905 * 114.09831 * 61.16158 * 14 13 12 16 16 C 1.53098 * 109.41155 * 298.83847 * 15 14 13 17 17 C 1.46922 * 118.73598 * 306.64147 * 6 5 4 18 18 C 1.52759 * 109.00915 * 53.30877 * 17 6 5 19 19 H 1.08997 * 109.38954 * 65.51917 * 18 17 6 20 20 C 1.53002 * 109.56162 * 185.55450 * 18 17 6 21 21 N 1.46496 * 109.47121 * 294.95998 * 20 18 17 22 22 C 1.36947 * 120.00188 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99784 * 0.02562 * 22 21 20 24 24 C 1.38808 * 120.00079 * 180.02562 * 22 21 20 25 25 N 1.31626 * 120.00197 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00016 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47344 * 0.02562 * 26 24 22 28 28 H 1.48505 * 109.47326 * 120.00098 * 26 24 22 29 29 H 1.48499 * 109.47499 * 240.00570 * 26 24 22 30 30 H 1.09005 * 109.46216 * 300.02274 * 1 2 3 31 31 H 1.08997 * 109.47182 * 60.01738 * 1 2 3 32 32 H 1.08991 * 109.47388 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.49324 * 298.68485 * 4 2 1 34 34 H 1.09002 * 109.49457 * 178.58927 * 4 2 1 35 35 H 1.08999 * 109.59158 * 294.84336 * 5 4 2 36 36 H 1.09009 * 109.58119 * 174.42337 * 5 4 2 37 37 H 1.08999 * 109.46677 * 60.00499 * 9 7 6 38 38 H 1.08996 * 109.47164 * 300.00160 * 9 7 6 39 39 H 1.08996 * 109.54002 * 29.82398 * 11 10 9 40 40 H 1.09004 * 109.52714 * 56.93961 * 12 11 10 41 41 H 1.09001 * 109.57654 * 296.78691 * 12 11 10 42 42 H 1.08997 * 109.48111 * 182.40965 * 13 12 11 43 43 H 1.09000 * 109.48212 * 62.37239 * 13 12 11 44 44 H 1.09000 * 109.47932 * 58.81878 * 15 14 13 45 45 H 1.08993 * 109.48024 * 178.86013 * 15 14 13 46 46 H 1.08996 * 109.52270 * 297.70307 * 16 15 14 47 47 H 1.08995 * 109.57012 * 177.54155 * 16 15 14 48 48 H 1.09002 * 109.58761 * 173.14689 * 17 6 5 49 49 H 1.09004 * 109.58653 * 293.56495 * 17 6 5 50 50 H 1.09001 * 109.47550 * 54.96492 * 20 18 17 51 51 H 1.09011 * 109.46774 * 174.96553 * 20 18 17 52 52 H 0.97003 * 120.00319 * 0.02562 * 21 20 18 53 53 H 0.96999 * 119.99947 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0399 -0.7211 1.2499 5 6 1.4992 -2.1543 1.2639 6 7 1.8618 -2.8090 -0.0005 7 6 2.5154 -3.9877 -0.0008 8 8 2.8095 -4.5178 -1.0511 9 6 2.8818 -4.6464 1.3043 10 8 3.5635 -5.8748 1.0429 11 6 3.9567 -6.5832 2.2200 12 6 3.9662 -8.0879 1.9333 13 6 4.4638 -8.8328 3.1747 14 8 5.7645 -8.3559 3.5253 15 6 5.8080 -6.9649 3.8499 16 6 5.3644 -6.1449 2.6355 17 6 1.5038 -2.1513 -1.2645 18 6 2.0395 -0.7208 -1.2503 19 1 3.1292 -0.7426 -1.2391 20 6 1.5564 0.0196 -2.4990 21 7 2.1416 -0.5995 -3.6908 22 6 1.8500 -0.1033 -4.9335 23 1 1.1890 0.7447 -5.0348 24 6 2.4041 -0.6903 -6.0627 25 7 3.2093 -1.7242 -5.9393 26 14 2.0069 -0.0130 -7.7577 27 1 1.0850 1.1436 -7.6251 28 1 3.2605 0.4273 -8.4210 29 1 1.3599 -1.0711 -8.5745 30 1 -0.3632 0.5142 0.8899 31 1 -0.3633 0.5135 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.6961 -0.1938 2.1397 34 1 3.1297 -0.7434 1.2379 35 1 0.4144 -2.1347 1.3673 36 1 1.9380 -2.7022 2.0980 37 1 1.9762 -4.8476 1.8764 38 1 3.5328 -3.9844 1.8752 39 1 3.2542 -6.3699 3.0256 40 1 4.6301 -8.2947 1.0939 41 1 2.9569 -8.4196 1.6896 42 1 4.5134 -9.9008 2.9623 43 1 3.7772 -8.6583 4.0030 44 1 5.1389 -6.7659 4.6870 45 1 6.8258 -6.6872 4.1237 46 1 6.0565 -6.3123 1.8104 47 1 5.3547 -5.0860 2.8938 48 1 1.9453 -2.6971 -2.0983 49 1 0.4192 -2.1314 -1.3717 50 1 0.4694 -0.0364 -2.5570 51 1 1.8640 1.0640 -2.4440 52 1 2.7350 -1.3615 -3.5999 53 1 3.5961 -2.1346 -6.7284 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133145594.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:28 Heat of formation + Delta-G solvation = -147.139659 kcal Electronic energy + Delta-G solvation = -30851.733977 eV Core-core repulsion = 26722.391264 eV Total energy + Delta-G solvation = -4129.342713 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.57493 -40.56546 -39.41320 -38.14610 -36.65951 -34.94055 -33.58223 -33.47425 -32.10773 -31.64203 -29.60929 -28.56756 -26.84472 -25.67367 -25.07679 -24.86486 -24.52853 -22.58316 -21.49639 -21.02337 -19.45486 -18.93304 -18.57683 -17.72883 -17.32948 -17.20666 -16.86803 -16.80400 -16.49117 -16.13123 -15.82558 -15.69415 -15.67873 -15.29776 -15.11844 -14.67302 -14.57160 -14.36379 -14.29989 -13.93332 -13.82085 -13.64107 -13.27079 -13.06824 -12.94090 -12.90158 -12.64704 -12.45332 -12.43640 -12.25634 -12.11886 -12.00139 -11.92353 -11.90610 -11.72951 -11.39022 -11.34931 -11.21764 -10.96111 -10.79085 -10.66741 -10.55365 -9.61241 -9.02817 -7.96480 -5.27392 1.43098 1.45602 1.52729 1.55691 1.67741 2.53495 2.72794 2.98030 3.36439 3.45695 3.69202 3.72664 3.79078 3.83310 3.85775 3.96181 4.04922 4.07282 4.09560 4.19161 4.22420 4.26982 4.30512 4.37594 4.42022 4.51944 4.53197 4.57108 4.67033 4.72155 4.75902 4.78250 4.82428 4.83723 4.92061 5.00009 5.04470 5.10087 5.11405 5.18506 5.20262 5.25653 5.31009 5.41719 5.46391 5.50864 5.61789 6.09727 6.23970 6.24447 6.42611 7.15690 7.28964 8.05926 8.27608 9.27239 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012777 B = 0.002434 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2190.948768 B =11501.297517 C =13149.103240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.080 4.080 3 H 0.079 0.921 4 C -0.124 4.124 5 C 0.096 3.904 6 N -0.604 5.604 7 C 0.496 3.504 8 O -0.585 6.585 9 C 0.054 3.946 10 O -0.394 6.394 11 C 0.083 3.917 12 C -0.157 4.157 13 C 0.067 3.933 14 O -0.407 6.407 15 C 0.064 3.936 16 C -0.179 4.179 17 C 0.130 3.870 18 C -0.090 4.090 19 H 0.047 0.953 20 C 0.159 3.841 21 N -0.750 5.750 22 C -0.244 4.244 23 H 0.081 0.919 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.260 1.260 28 H -0.293 1.293 29 H -0.295 1.295 30 H 0.083 0.917 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.118 0.882 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.086 0.914 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.105 0.895 46 H 0.052 0.948 47 H 0.092 0.908 48 H 0.042 0.958 49 H 0.073 0.927 50 H 0.031 0.969 51 H 0.024 0.976 52 H 0.369 0.631 53 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.585 -5.295 31.950 32.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.099 4.099 3 H 0.097 0.903 4 C -0.161 4.161 5 C -0.025 4.025 6 N -0.338 5.338 7 C 0.285 3.715 8 O -0.464 6.464 9 C -0.024 4.024 10 O -0.313 6.313 11 C 0.026 3.974 12 C -0.195 4.195 13 C -0.009 4.009 14 O -0.326 6.326 15 C -0.012 4.012 16 C -0.217 4.217 17 C 0.007 3.993 18 C -0.110 4.110 19 H 0.066 0.934 20 C 0.032 3.968 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.274 4.274 25 N -0.624 5.624 26 Si 0.807 3.193 27 H -0.184 1.184 28 H -0.220 1.220 29 H -0.222 1.222 30 H 0.101 0.899 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.112 0.888 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.072 0.928 41 H 0.105 0.895 42 H 0.126 0.874 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.071 0.929 47 H 0.110 0.890 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.049 0.951 51 H 0.042 0.958 52 H 0.200 0.800 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.337 -5.631 31.133 31.814 hybrid contribution 0.239 0.163 -1.943 1.964 sum -3.098 -5.468 29.191 29.859 Atomic orbital electron populations 1.21960 0.93957 1.02146 1.02561 1.21079 0.96965 0.99321 0.92555 0.90251 1.21962 1.00851 0.94911 0.98415 1.22259 1.02259 0.93965 0.84013 1.48200 1.56843 1.20298 1.08474 1.21247 0.77258 0.81240 0.91768 1.90774 1.54888 1.64740 1.35983 1.22410 0.99603 0.87505 0.92924 1.88092 1.76557 1.34322 1.32322 1.22393 0.95750 0.91859 0.87413 1.22335 1.03130 0.93962 1.00054 1.22686 0.84244 0.99096 0.94879 1.87928 1.30846 1.25426 1.88424 1.22693 1.03551 0.79835 0.95134 1.22752 0.97205 1.02056 0.99732 1.21251 0.99538 0.92709 0.85766 1.21471 0.99247 0.94212 0.96024 0.93441 1.20888 0.95982 0.94844 0.85050 1.42724 1.56862 1.37476 1.02143 1.19717 1.22243 1.10615 0.84961 0.90147 1.25703 1.00609 0.99014 1.02116 1.69892 1.37333 1.26138 1.29074 0.85002 0.77201 0.77600 0.79520 1.18435 1.22031 1.22183 0.89854 0.93600 0.92529 0.86634 0.92129 0.88796 0.86649 0.86461 0.87294 0.88498 0.92819 0.89515 0.87422 0.90474 0.90447 0.87673 0.92945 0.88994 0.93915 0.90857 0.95139 0.95795 0.79971 0.94169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 8.11 71.98 0.58 -2.15 16 2 C -0.08 -1.69 2.71 -10.76 -0.03 -1.72 16 3 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.73 5.63 30.67 0.17 -1.55 16 5 C 0.10 1.33 5.87 86.36 0.51 1.84 16 6 N -0.60 -16.26 2.98 -819.74 -2.44 -18.70 16 7 C 0.50 15.88 7.78 87.66 0.68 16.56 16 8 O -0.58 -27.42 15.91 16.03 0.26 -27.16 16 9 C 0.05 1.07 4.58 71.24 0.33 1.40 16 10 O -0.39 -10.30 9.53 -129.94 -1.24 -11.53 16 11 C 0.08 1.39 2.70 30.71 0.08 1.47 16 12 C -0.16 -2.70 5.79 30.68 0.18 -2.52 16 13 C 0.07 0.85 6.84 72.01 0.49 1.34 16 14 O -0.41 -6.95 10.77 -148.98 -1.60 -8.55 16 15 C 0.06 0.77 6.84 72.01 0.49 1.26 16 16 C -0.18 -2.78 5.76 30.69 0.18 -2.61 16 17 C 0.13 4.61 5.03 86.22 0.43 5.04 16 18 C -0.09 -2.97 2.14 -10.86 -0.02 -2.99 16 19 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 20 C 0.16 6.52 5.19 86.38 0.45 6.97 16 21 N -0.75 -41.01 5.38 -343.44 -1.85 -42.85 16 22 C -0.24 -14.37 9.99 84.03 0.84 -13.53 16 23 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 24 C -0.08 -5.06 5.50 84.86 0.47 -4.59 16 25 N -0.97 -64.70 13.06 21.65 0.28 -64.42 16 26 Si 0.98 48.64 29.55 68.60 2.03 50.66 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 29 H -0.29 -14.67 7.11 99.48 0.71 -13.96 16 30 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.04 1.01 6.57 -2.39 -0.02 1.00 16 32 H 0.06 1.05 4.99 -2.39 -0.01 1.04 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.02 6.69 -2.39 -0.02 1.00 16 36 H 0.12 0.76 5.93 -2.38 -0.01 0.75 16 37 H 0.12 1.32 7.89 -2.39 -0.02 1.30 16 38 H 0.11 1.40 7.54 -2.39 -0.02 1.38 16 39 H 0.10 0.93 7.79 -2.39 -0.02 0.91 16 40 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.08 7.99 -2.39 -0.02 1.06 16 48 H 0.04 2.04 6.20 -2.39 -0.01 2.03 16 49 H 0.07 2.46 6.70 -2.38 -0.02 2.44 16 50 H 0.03 1.22 6.73 -2.39 -0.02 1.21 16 51 H 0.02 0.98 8.14 -2.38 -0.02 0.96 16 52 H 0.37 22.34 6.89 -92.71 -0.64 21.70 16 53 H 0.25 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -89.28 402.85 1.52 -87.76 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.26 Total: 30.58 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 5.83 Total: 4.22 kcal Atomic # 7 Polarization: -121.97 SS G_CDS: -4.01 Total: -125.97 kcal Atomic # 8 Polarization: -44.66 SS G_CDS: -2.59 Total: -47.25 kcal Atomic # 14 Polarization: 48.64 SS G_CDS: 2.03 Total: 50.66 kcal Total: -89.28 1.52 -87.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133145594.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.383 kcal (2) G-P(sol) polarization free energy of solvation -89.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds