Wall clock time and date at job start Tue Mar 31 2020 23:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 H 1.09001 * 109.44905 * 2 1 4 4 C 1.53045 * 109.46064 * 240.03350 * 2 1 3 5 5 C 1.53193 * 109.31211 * 178.61201 * 4 2 1 6 6 N 1.46927 * 108.77386 * 54.63774 * 5 4 2 7 7 C 1.34777 * 120.63303 * 126.36982 * 6 5 4 8 8 O 1.21283 * 120.00463 * 179.97438 * 7 6 5 9 9 C 1.50700 * 119.99675 * 359.72079 * 7 6 5 10 10 O 1.42899 * 109.47143 * 180.27800 * 9 7 6 11 11 C 1.42899 * 114.00265 * 179.97438 * 10 9 7 12 12 C 1.53171 * 109.54661 * 269.55932 * 11 10 9 13 13 C 1.53097 * 109.16639 * 183.15102 * 12 11 10 14 14 O 1.42902 * 109.41292 * 57.60501 * 13 12 11 15 15 C 1.42899 * 114.09881 * 298.84427 * 14 13 12 16 16 C 1.53095 * 109.41764 * 61.16013 * 15 14 13 17 17 C 1.46925 * 118.74028 * 306.63705 * 6 5 4 18 18 C 1.52760 * 109.00575 * 53.31181 * 17 6 5 19 19 H 1.09002 * 109.38470 * 65.51582 * 18 17 6 20 20 C 1.53004 * 109.56601 * 185.55135 * 18 17 6 21 21 N 1.46502 * 109.47200 * 294.96623 * 20 18 17 22 22 C 1.36927 * 119.99927 * 179.97438 * 21 20 18 23 23 H 1.08005 * 120.00538 * 359.97438 * 22 21 20 24 24 C 1.38819 * 120.00273 * 180.02562 * 22 21 20 25 25 N 1.31622 * 119.99209 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00286 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47374 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47098 * 119.99955 * 26 24 22 29 29 H 1.48500 * 109.47087 * 239.99802 * 26 24 22 30 30 H 1.08998 * 109.47392 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47172 * 299.96642 * 1 2 3 32 32 H 1.08998 * 109.47449 * 59.96245 * 1 2 3 33 33 H 1.08996 * 109.49670 * 58.66439 * 4 2 1 34 34 H 1.09000 * 109.49698 * 298.56546 * 4 2 1 35 35 H 1.08997 * 109.59146 * 294.85081 * 5 4 2 36 36 H 1.08999 * 109.58394 * 174.42111 * 5 4 2 37 37 H 1.09009 * 109.47352 * 300.27556 * 9 7 6 38 38 H 1.08998 * 109.47585 * 60.27844 * 9 7 6 39 39 H 1.09001 * 109.54195 * 29.82292 * 11 10 9 40 40 H 1.09008 * 109.52418 * 303.05262 * 12 11 10 41 41 H 1.08998 * 109.52868 * 63.24484 * 12 11 10 42 42 H 1.09002 * 109.47697 * 297.62337 * 13 12 11 43 43 H 1.08992 * 109.48244 * 177.59106 * 13 12 11 44 44 H 1.08995 * 109.48229 * 301.17530 * 15 14 13 45 45 H 1.09000 * 109.48315 * 181.14157 * 15 14 13 46 46 H 1.08992 * 109.52491 * 182.48294 * 16 15 14 47 47 H 1.08999 * 109.57417 * 62.32693 * 16 15 14 48 48 H 1.09000 * 109.59194 * 173.14578 * 17 6 5 49 49 H 1.09004 * 109.59115 * 293.57214 * 17 6 5 50 50 H 1.09002 * 109.46956 * 54.96666 * 20 18 17 51 51 H 1.08999 * 109.47035 * 174.96408 * 20 18 17 52 52 H 0.97003 * 119.99453 * 359.97438 * 21 20 18 53 53 H 0.97007 * 119.99108 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8928 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6885 -1.2643 6 7 4.0678 -1.2488 0.0000 7 6 4.9614 -2.2577 0.0000 8 8 5.3639 -2.7113 1.0503 9 6 5.4560 -2.8262 -1.3051 10 8 6.3836 -3.8814 -1.0440 11 6 6.9154 -4.4924 -2.2212 12 6 6.0275 -5.6708 -2.6327 13 6 6.6472 -6.3670 -3.8472 14 8 7.9723 -6.7940 -3.5249 15 6 8.8604 -5.7295 -3.1783 16 6 8.3296 -5.0077 -1.9369 17 6 3.5671 -0.6923 1.2642 18 6 2.0399 -0.7207 1.2501 19 1 1.6974 -1.7555 1.2386 20 6 1.5027 -0.0188 2.4991 21 7 1.8917 -0.7771 3.6907 22 6 1.5210 -0.3372 4.9333 23 1 0.9423 0.5690 5.0350 24 6 1.8900 -1.0553 6.0625 25 7 2.5966 -2.1589 5.9387 26 14 1.3837 -0.4556 7.7576 27 1 0.6013 0.7996 7.6253 28 1 0.5510 -1.4910 8.4207 29 1 2.5970 -0.1983 8.5744 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5134 0.8904 32 1 -0.3634 0.5144 -0.8896 33 1 1.6572 -0.2207 -2.1398 34 1 1.6977 -1.7557 -1.2383 35 1 3.9142 0.3409 -1.3673 36 1 3.9416 -1.2845 -2.0984 37 1 4.6124 -3.2166 -1.8744 38 1 5.9499 -2.0421 -1.8790 39 1 6.9494 -3.7606 -3.0283 40 1 5.9539 -6.3775 -1.8060 41 1 5.0334 -5.3054 -2.8903 42 1 6.6833 -5.6714 -4.6857 43 1 6.0423 -7.2321 -4.1182 44 1 8.9254 -5.0257 -4.0080 45 1 9.8497 -6.1355 -2.9674 46 1 8.9818 -4.1681 -1.6969 47 1 8.3026 -5.7001 -1.0955 48 1 3.9346 -1.2907 2.0979 49 1 3.9097 0.3369 1.3716 50 1 1.9178 0.9874 2.5572 51 1 0.4157 0.0392 2.4440 52 1 2.4118 -1.5908 3.5994 53 1 2.8541 -2.6609 6.7278 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133145595.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:32 Heat of formation + Delta-G solvation = -149.993707 kcal Electronic energy + Delta-G solvation = -30716.485796 eV Core-core repulsion = 26587.019322 eV Total energy + Delta-G solvation = -4129.466474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.46998 -40.53682 -39.31431 -38.14558 -36.64289 -35.11268 -33.62734 -33.47425 -32.10836 -31.63127 -29.97602 -28.65195 -26.93806 -25.26826 -24.88710 -24.58045 -24.19516 -22.58940 -21.48727 -21.23834 -20.09868 -19.16307 -18.55332 -17.71706 -17.31130 -17.22512 -16.86755 -16.76510 -16.55080 -15.87542 -15.69252 -15.60092 -15.48821 -15.37968 -15.08194 -14.58317 -14.50869 -14.36658 -14.18311 -14.13698 -13.89166 -13.62996 -13.27062 -13.08901 -13.06003 -12.80945 -12.64930 -12.62061 -12.44064 -12.25575 -12.14886 -11.99433 -11.92175 -11.90480 -11.78513 -11.38474 -11.31517 -11.17524 -10.98410 -10.76806 -10.66387 -10.55374 -9.67846 -9.01830 -7.96219 -5.26826 1.43156 1.45664 1.52205 1.55740 1.67660 2.53710 2.72660 2.98018 3.36757 3.45590 3.67403 3.72645 3.79522 3.81207 3.86707 3.96230 4.04988 4.05863 4.07759 4.19418 4.22608 4.26925 4.29326 4.37778 4.43072 4.51918 4.57209 4.60338 4.67045 4.74764 4.75892 4.79563 4.82393 4.83994 4.95963 4.97023 5.04412 5.08573 5.11355 5.13986 5.18948 5.23927 5.28460 5.44318 5.47121 5.52639 5.58825 6.09526 6.24253 6.24470 6.42140 7.15278 7.29281 8.06431 8.28142 9.27536 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012514 B = 0.002421 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.966078 B =11561.005465 C =13217.573466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.085 0.915 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.605 5.605 7 C 0.496 3.504 8 O -0.585 6.585 9 C 0.055 3.945 10 O -0.394 6.394 11 C 0.083 3.917 12 C -0.179 4.179 13 C 0.064 3.936 14 O -0.407 6.407 15 C 0.067 3.933 16 C -0.157 4.157 17 C 0.128 3.872 18 C -0.088 4.088 19 H 0.047 0.953 20 C 0.156 3.844 21 N -0.749 5.749 22 C -0.243 4.243 23 H 0.081 0.919 24 C -0.083 4.083 25 N -0.973 5.973 26 Si 0.978 3.022 27 H -0.260 1.260 28 H -0.293 1.293 29 H -0.295 1.295 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.116 0.884 37 H 0.110 0.890 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.052 0.948 41 H 0.092 0.908 42 H 0.077 0.923 43 H 0.105 0.895 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.044 0.956 49 H 0.071 0.929 50 H 0.024 0.976 51 H 0.034 0.966 52 H 0.369 0.631 53 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.554 1.208 -31.974 32.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.103 0.897 4 C -0.161 4.161 5 C -0.023 4.023 6 N -0.339 5.339 7 C 0.285 3.715 8 O -0.464 6.464 9 C -0.024 4.024 10 O -0.313 6.313 11 C 0.026 3.974 12 C -0.218 4.218 13 C -0.012 4.012 14 O -0.326 6.326 15 C -0.009 4.009 16 C -0.195 4.195 17 C 0.005 3.995 18 C -0.107 4.107 19 H 0.066 0.934 20 C 0.030 3.970 21 N -0.392 5.392 22 C -0.375 4.375 23 H 0.099 0.901 24 C -0.275 4.275 25 N -0.624 5.624 26 Si 0.807 3.193 27 H -0.184 1.184 28 H -0.220 1.220 29 H -0.222 1.222 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.100 0.900 33 H 0.134 0.866 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.123 0.877 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.105 0.895 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.089 0.911 50 H 0.042 0.958 51 H 0.052 0.948 52 H 0.200 0.800 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.786 0.861 -31.158 31.702 hybrid contribution -0.173 -0.149 1.947 1.961 sum 5.613 0.712 -29.210 29.753 Atomic orbital electron populations 1.21857 0.94377 1.01631 1.02407 1.21100 0.96394 0.99708 0.92590 0.89658 1.22000 0.94383 1.01346 0.98387 1.22236 0.95007 1.01094 0.83988 1.48223 1.42367 1.34843 1.08516 1.21254 0.79025 0.79449 0.91780 1.90776 1.58844 1.60775 1.36002 1.22411 0.95207 0.91913 0.92904 1.88093 1.60587 1.50297 1.32330 1.22393 0.93179 0.94425 0.87419 1.22754 1.00867 0.98393 0.99737 1.22694 0.82757 1.00617 0.95150 1.87926 1.21885 1.34268 1.88543 1.22683 0.93625 0.89691 0.94900 1.22335 0.95672 1.01422 1.00057 1.21268 0.94149 0.98220 0.85878 1.21488 0.93787 0.99475 0.95993 0.93423 1.20943 0.97219 0.93857 0.85018 1.42714 1.65247 1.29066 1.02142 1.19713 1.26700 1.06082 0.84961 0.90148 1.25702 1.01667 0.98010 1.02101 1.69896 1.44500 1.18993 1.29057 0.85004 0.77058 0.77734 0.79548 1.18429 1.22031 1.22229 0.93663 0.93418 0.90004 0.86623 0.92220 0.88861 0.86551 0.87275 0.86438 0.88489 0.92944 0.88992 0.90445 0.87673 0.90471 0.87422 0.89518 0.92814 0.93711 0.91054 0.95850 0.94779 0.79990 0.94191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.82 71.98 0.63 -2.29 16 2 C -0.08 -1.66 2.23 -10.77 -0.02 -1.68 16 3 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.12 -1.71 5.36 30.67 0.16 -1.55 16 5 C 0.10 1.33 6.35 86.36 0.55 1.88 16 6 N -0.61 -16.31 2.98 -819.73 -2.44 -18.75 16 7 C 0.50 15.89 7.78 87.66 0.68 16.57 16 8 O -0.58 -27.44 15.91 16.00 0.25 -27.19 16 9 C 0.05 1.07 4.58 71.24 0.33 1.39 16 10 O -0.39 -10.30 9.53 -129.94 -1.24 -11.54 16 11 C 0.08 1.39 2.70 30.71 0.08 1.47 16 12 C -0.18 -2.78 5.76 30.68 0.18 -2.61 16 13 C 0.06 0.77 6.84 72.01 0.49 1.26 16 14 O -0.41 -6.95 10.77 -148.98 -1.60 -8.55 16 15 C 0.07 0.85 6.84 72.01 0.49 1.34 16 16 C -0.16 -2.70 5.79 30.69 0.18 -2.53 16 17 C 0.13 4.53 5.49 86.22 0.47 5.00 16 18 C -0.09 -2.89 1.90 -10.86 -0.02 -2.91 16 19 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 20 C 0.16 6.38 5.41 86.38 0.47 6.85 16 21 N -0.75 -40.91 5.38 -343.44 -1.85 -42.75 16 22 C -0.24 -14.30 9.99 84.04 0.84 -13.46 16 23 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 24 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 25 N -0.97 -64.69 13.06 21.65 0.28 -64.41 16 26 Si 0.98 48.63 29.55 68.60 2.03 50.66 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 29 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 30 H 0.04 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.13 6.29 -2.38 -0.01 1.11 16 32 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.12 0.74 5.93 -2.39 -0.01 0.73 16 37 H 0.11 1.40 7.54 -2.38 -0.02 1.38 16 38 H 0.12 1.32 7.89 -2.39 -0.02 1.30 16 39 H 0.10 0.93 7.79 -2.39 -0.02 0.91 16 40 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 41 H 0.09 1.08 7.99 -2.39 -0.02 1.06 16 42 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.04 2.13 6.20 -2.39 -0.01 2.12 16 49 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 50 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.03 1.37 6.14 -2.39 -0.01 1.35 16 52 H 0.37 22.30 6.89 -92.71 -0.64 21.66 16 53 H 0.25 16.03 8.31 -92.70 -0.77 15.26 16 Total: -1.00 -89.36 408.91 1.66 -87.70 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.24 Total: 30.69 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.98 Total: 4.14 kcal Atomic # 7 Polarization: -121.90 SS G_CDS: -4.00 Total: -125.91 kcal Atomic # 8 Polarization: -44.69 SS G_CDS: -2.59 Total: -47.28 kcal Atomic # 14 Polarization: 48.63 SS G_CDS: 2.03 Total: 50.66 kcal Total: -89.36 1.66 -87.70 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133145595.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.294 kcal (2) G-P(sol) polarization free energy of solvation -89.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds