Wall clock time and date at job start Wed Apr 1 2020 00:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70379 * 2 1 4 4 C 1.53198 * 109.58601 * 120.35361 * 2 1 3 5 5 H 1.09004 * 109.49100 * 185.13643 * 4 2 1 6 6 C 1.52998 * 109.49757 * 305.20151 * 4 2 1 7 7 N 1.46504 * 109.46855 * 185.00181 * 6 4 2 8 8 C 1.34768 * 119.99732 * 179.97438 * 7 6 4 9 9 O 1.21511 * 120.00364 * 0.02562 * 8 7 6 10 10 O 1.34642 * 119.99923 * 179.97438 * 8 7 6 11 11 C 1.45199 * 117.00182 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.47110 * 60.00027 * 11 10 8 13 13 C 1.52995 * 109.47525 * 180.02562 * 11 10 8 14 14 C 1.52998 * 109.47060 * 300.00545 * 11 10 8 15 15 C 1.53040 * 109.30924 * 65.15587 * 4 2 1 16 16 C 1.53037 * 109.54181 * 61.36466 * 15 4 2 17 17 C 1.53196 * 109.31040 * 298.63376 * 16 15 4 18 18 N 1.46920 * 108.77435 * 54.63686 * 17 16 15 19 19 C 1.34778 * 120.63229 * 126.37018 * 18 17 16 20 20 O 1.21280 * 120.00314 * 179.97438 * 19 18 17 21 21 C 1.50698 * 119.99794 * 0.02562 * 19 18 17 22 22 C 1.50707 * 109.47172 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99793 * 359.97438 * 22 21 19 24 24 C 1.37873 * 120.00061 * 179.97438 * 22 21 19 25 25 N 1.31512 * 119.99713 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00037 * 359.97438 * 24 22 21 27 27 H 1.48503 * 109.46999 * 89.99981 * 26 24 22 28 28 H 1.48503 * 109.47310 * 209.99746 * 26 24 22 29 29 H 1.48498 * 109.47421 * 330.00302 * 26 24 22 30 30 H 1.08999 * 109.47071 * 180.35498 * 1 2 3 31 31 H 1.09006 * 109.47129 * 300.35483 * 1 2 3 32 32 H 1.09000 * 109.47206 * 60.35768 * 1 2 3 33 33 H 1.09004 * 109.47220 * 304.99935 * 6 4 2 34 34 H 1.08993 * 109.47173 * 65.00038 * 6 4 2 35 35 H 0.96998 * 119.99977 * 359.97438 * 7 6 4 36 36 H 1.09001 * 109.46575 * 60.00392 * 12 11 10 37 37 H 1.09000 * 109.46896 * 179.97438 * 12 11 10 38 38 H 1.08992 * 109.47028 * 300.00494 * 12 11 10 39 39 H 1.09005 * 109.47297 * 59.99565 * 13 11 10 40 40 H 1.09000 * 109.47594 * 180.02562 * 13 11 10 41 41 H 1.09009 * 109.47028 * 299.99971 * 13 11 10 42 42 H 1.08994 * 109.47490 * 59.99888 * 14 11 10 43 43 H 1.09009 * 109.47301 * 179.97438 * 14 11 10 44 44 H 1.09000 * 109.46978 * 299.99469 * 14 11 10 45 45 H 1.09000 * 109.45820 * 301.33998 * 15 4 2 46 46 H 1.09003 * 109.45295 * 181.38218 * 15 4 2 47 47 H 1.08999 * 109.50017 * 178.67783 * 16 15 4 48 48 H 1.09004 * 109.49998 * 58.58381 * 16 15 4 49 49 H 1.08998 * 109.58545 * 174.42116 * 17 16 15 50 50 H 1.08995 * 109.58642 * 294.70603 * 17 16 15 51 51 H 1.09001 * 109.47247 * 299.99486 * 21 19 18 52 52 H 1.08995 * 109.47466 * 59.99868 * 21 19 18 53 53 H 0.97007 * 119.99545 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2455 5 1 3.1297 -0.6498 1.2916 6 6 1.4314 -0.0964 2.4967 7 7 2.0131 -0.7143 3.6909 8 6 1.6219 -0.3120 4.9162 9 8 0.7865 0.5630 5.0305 10 8 2.1560 -0.8802 6.0138 11 6 1.6872 -0.3976 7.3005 12 6 0.1784 -0.6262 7.4120 13 6 2.4025 -1.1552 8.4208 14 6 1.9868 1.0976 7.4244 15 6 1.6415 -2.2041 1.1701 16 6 2.2800 -2.8464 -0.0634 17 6 1.7692 -2.1410 -1.3237 18 7 2.0226 -0.6996 -1.1944 19 6 2.6945 -0.0317 -2.1531 20 8 2.8969 1.1582 -2.0349 21 6 3.1932 -0.7634 -3.3725 22 6 3.9064 0.2038 -4.2820 23 1 3.9897 1.2443 -4.0049 24 6 4.4524 -0.2397 -5.4678 25 7 5.0743 0.6044 -6.2616 26 14 4.3088 -2.0395 -5.9467 27 1 3.0644 -2.2454 -6.7305 28 1 5.4822 -2.4279 -6.7699 29 1 4.2656 -2.8762 -4.7206 30 1 -0.3633 -1.0276 0.0064 31 1 -0.3634 0.5194 0.8868 32 1 -0.3633 0.5083 -0.8932 33 1 1.6410 0.9733 2.5024 34 1 0.3532 -0.2553 2.4939 35 1 2.6797 -1.4130 3.5997 36 1 -0.0351 -1.6915 7.3238 37 1 -0.1734 -0.2644 8.3782 38 1 -0.3309 -0.0863 6.6139 39 1 3.4773 -0.9920 8.3412 40 1 2.0502 -0.7932 9.3868 41 1 2.1893 -2.2206 8.3328 42 1 1.4775 1.6376 6.6263 43 1 1.6345 1.4601 8.3902 44 1 3.0617 1.2605 7.3449 45 1 0.5565 -2.2815 1.0993 46 1 1.9844 -2.7202 2.0669 47 1 2.0124 -3.9022 -0.1036 48 1 3.3640 -2.7474 -0.0052 49 1 2.2944 -2.5274 -2.1971 50 1 0.6992 -2.3176 -1.4330 51 1 3.8828 -1.5504 -3.0673 52 1 2.3490 -1.2052 -3.9018 53 1 5.4588 0.2923 -7.0958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194093.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:04 Heat of formation + Delta-G solvation = -155.008900 kcal Electronic energy + Delta-G solvation = -30869.496751 eV Core-core repulsion = 26739.812802 eV Total energy + Delta-G solvation = -4129.683949 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87488 -41.33644 -39.25746 -38.16448 -36.17577 -35.13383 -34.98370 -33.68029 -33.34062 -31.49890 -29.24703 -28.34285 -28.27347 -27.13278 -25.91770 -24.44865 -23.30444 -22.97961 -21.30258 -20.78779 -19.35590 -19.15269 -19.04729 -17.74394 -17.60485 -17.30528 -16.99668 -16.53554 -16.22808 -15.97348 -15.74390 -15.55244 -15.36707 -15.15741 -14.90347 -14.48919 -14.39413 -14.15925 -13.96921 -13.82855 -13.70975 -13.33221 -13.30976 -13.14872 -12.91956 -12.87908 -12.84176 -12.78295 -12.50121 -12.44099 -12.39563 -12.28054 -12.05925 -11.83554 -11.79191 -11.68923 -11.37446 -11.36602 -11.23678 -11.11122 -10.79148 -10.48691 -10.20643 -9.53606 -8.26383 -6.35204 1.15051 1.38419 1.43447 1.53678 1.77346 1.84321 2.12957 2.38292 3.06639 3.15885 3.56626 3.69580 3.77371 3.80877 3.82411 3.97091 4.09535 4.12699 4.20892 4.23003 4.38611 4.46594 4.53008 4.59451 4.63659 4.66031 4.67100 4.71801 4.78745 4.79221 4.82789 4.87779 4.90182 4.93383 5.02086 5.03841 5.07533 5.11639 5.15178 5.19309 5.24039 5.30190 5.30756 5.38295 5.47459 5.53960 5.59325 5.76696 6.24233 6.40006 6.54702 6.82393 7.25234 7.34640 7.46225 8.91382 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024332 B = 0.002097 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.482590 B =13348.987512 C =13526.365683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.063 0.937 4 C -0.096 4.096 5 H 0.072 0.928 6 C 0.151 3.849 7 N -0.697 5.697 8 C 0.645 3.355 9 O -0.594 6.594 10 O -0.369 6.369 11 C 0.125 3.875 12 C -0.179 4.179 13 C -0.136 4.136 14 C -0.182 4.182 15 C -0.110 4.110 16 C -0.129 4.129 17 C 0.093 3.907 18 N -0.610 5.610 19 C 0.519 3.481 20 O -0.590 6.590 21 C -0.020 4.020 22 C -0.535 4.535 23 H 0.025 0.975 24 C -0.001 4.001 25 N -0.954 5.954 26 Si 0.961 3.039 27 H -0.261 1.261 28 H -0.286 1.286 29 H -0.226 1.226 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.106 0.894 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.089 0.911 51 H 0.068 0.932 52 H 0.065 0.935 53 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.823 -14.391 29.780 34.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.081 0.919 4 C -0.115 4.115 5 H 0.091 0.909 6 C 0.028 3.972 7 N -0.358 5.358 8 C 0.398 3.602 9 O -0.485 6.485 10 O -0.284 6.284 11 C 0.089 3.911 12 C -0.236 4.236 13 C -0.193 4.193 14 C -0.239 4.239 15 C -0.147 4.147 16 C -0.167 4.167 17 C -0.028 4.028 18 N -0.343 5.343 19 C 0.309 3.691 20 O -0.469 6.469 21 C -0.060 4.060 22 C -0.573 4.573 23 H 0.044 0.956 24 C -0.197 4.197 25 N -0.595 5.595 26 Si 0.782 3.218 27 H -0.186 1.186 28 H -0.212 1.212 29 H -0.149 1.149 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.109 0.891 44 H 0.078 0.922 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.124 0.876 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.108 0.892 51 H 0.085 0.915 52 H 0.083 0.917 53 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.037 -13.320 29.826 34.480 hybrid contribution 0.720 0.255 -1.007 1.264 sum -10.316 -13.065 28.820 33.282 Atomic orbital electron populations 1.22182 0.93197 1.03765 1.02357 1.20987 0.95369 0.96088 0.83938 0.91868 1.21605 1.00704 0.97368 0.91857 0.90945 1.21318 0.98442 0.96521 0.80902 1.44663 1.46099 1.42887 1.02133 1.18247 0.79805 0.80076 0.82053 1.90905 1.36506 1.34386 1.86663 1.86311 1.64746 1.62428 1.14871 1.22401 0.95268 0.94800 0.78665 1.22464 0.94206 1.02670 1.04241 1.21886 1.00912 1.00787 0.95708 1.22487 1.02186 0.94975 1.04225 1.21644 1.02089 0.92255 0.98710 1.21917 1.00681 1.00823 0.93286 1.22063 1.02460 0.78075 1.00239 1.48305 1.55781 1.10401 1.19856 1.21254 0.76079 0.87061 0.84664 1.90559 1.58678 1.18286 1.79394 1.19557 0.97982 0.96828 0.91631 1.21196 1.35724 0.95850 1.04518 0.95645 1.26190 0.93796 1.04187 0.95533 1.70107 1.38576 1.37986 1.12781 0.85536 0.78338 0.77956 0.79999 1.18570 1.21159 1.14855 0.89625 0.89949 0.93973 0.92568 0.89637 0.74700 0.91682 0.89257 0.91937 0.91406 0.88054 0.90968 0.92087 0.89136 0.92240 0.89734 0.89649 0.87578 0.92289 0.89643 0.89246 0.91463 0.91716 0.92334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.30 8.51 71.98 0.61 -2.68 16 2 C 0.14 3.72 2.80 44.98 0.13 3.85 16 3 H 0.06 2.17 7.00 -2.39 -0.02 2.15 16 4 C -0.10 -1.81 2.15 -10.71 -0.02 -1.83 16 5 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 6 C 0.15 2.77 4.40 86.38 0.38 3.15 16 7 N -0.70 -11.99 5.28 -590.86 -3.12 -15.11 16 8 C 0.64 14.02 8.06 129.79 1.05 15.06 16 9 O -0.59 -15.98 11.88 19.81 0.24 -15.74 16 10 O -0.37 -7.05 9.94 -55.51 -0.55 -7.60 16 11 C 0.12 1.91 1.13 -10.79 -0.01 1.90 16 12 C -0.18 -2.62 8.37 71.98 0.60 -2.02 16 13 C -0.14 -1.24 8.85 71.98 0.64 -0.61 16 14 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 15 C -0.11 -1.42 4.85 30.62 0.15 -1.27 16 16 C -0.13 -1.93 6.08 30.67 0.19 -1.74 16 17 C 0.09 1.99 5.92 86.37 0.51 2.50 16 18 N -0.61 -18.97 2.68 -795.04 -2.13 -21.10 16 19 C 0.52 23.21 7.69 87.66 0.67 23.88 16 20 O -0.59 -32.69 14.87 -3.03 -0.05 -32.73 16 21 C -0.02 -0.94 2.87 29.10 0.08 -0.86 16 22 C -0.53 -32.66 9.48 25.60 0.24 -32.42 16 23 H 0.03 1.84 7.00 -2.91 -0.02 1.82 16 24 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 25 N -0.95 -61.81 13.96 21.45 0.30 -61.51 16 26 Si 0.96 41.85 27.47 68.60 1.88 43.73 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 29 H -0.23 -8.32 6.54 99.48 0.65 -7.66 16 30 H 0.08 1.36 5.73 -2.39 -0.01 1.35 16 31 H 0.08 1.47 6.52 -2.38 -0.02 1.46 16 32 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.47 6.68 -2.39 -0.02 1.45 16 35 H 0.42 5.35 7.77 -92.71 -0.72 4.63 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.06 1.28 5.88 -2.39 -0.01 1.27 16 39 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 42 H 0.06 1.36 5.88 -2.39 -0.01 1.34 16 43 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 44 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.08 0.93 6.49 -2.39 -0.02 0.91 16 46 H 0.08 0.80 7.16 -2.39 -0.02 0.78 16 47 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.95 5.93 -2.39 -0.01 1.94 16 50 H 0.09 1.51 7.51 -2.39 -0.02 1.49 16 51 H 0.07 2.81 6.75 -2.39 -0.02 2.79 16 52 H 0.06 2.69 7.37 -2.39 -0.02 2.67 16 53 H 0.27 15.95 8.31 -92.70 -0.77 15.18 16 Total: -1.00 -85.00 401.53 2.99 -82.01 By element: Atomic # 1 Polarization: 22.93 SS G_CDS: 0.13 Total: 23.06 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 6.28 Total: 4.99 kcal Atomic # 7 Polarization: -92.77 SS G_CDS: -4.95 Total: -97.72 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -0.36 Total: -56.08 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Total: -85.00 2.99 -82.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194093.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.995 kcal (2) G-P(sol) polarization free energy of solvation -85.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds