Wall clock time and date at job start Wed Apr 1 2020 00:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.58617 * 2 1 4 4 C 1.53191 * 109.70583 * 120.37483 * 2 1 3 5 5 H 1.09003 * 109.50624 * 54.54963 * 4 2 1 6 6 C 1.52995 * 109.48570 * 294.44547 * 4 2 1 7 7 N 1.46503 * 109.47035 * 175.16736 * 6 4 2 8 8 C 1.34777 * 120.00076 * 180.02562 * 7 6 4 9 9 O 1.21506 * 119.99798 * 359.97438 * 8 7 6 10 10 O 1.34639 * 119.99807 * 180.02562 * 8 7 6 11 11 C 1.45203 * 116.99657 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47157 * 59.99625 * 11 10 8 13 13 C 1.53002 * 109.47144 * 179.97438 * 11 10 8 14 14 C 1.52998 * 109.46820 * 299.99860 * 11 10 8 15 15 C 1.53043 * 109.30930 * 174.49906 * 4 2 1 16 16 C 1.53030 * 109.53099 * 298.61380 * 15 4 2 17 17 C 1.53192 * 109.31251 * 61.37659 * 16 15 4 18 18 N 1.46927 * 108.77516 * 305.36164 * 17 16 15 19 19 C 1.34774 * 120.63614 * 233.59193 * 18 17 16 20 20 O 1.21275 * 120.00648 * 174.88547 * 19 18 17 21 21 C 1.50705 * 119.99284 * 354.88375 * 19 18 17 22 22 C 1.50706 * 109.46798 * 180.02562 * 21 19 18 23 23 H 1.07998 * 119.99681 * 359.97438 * 22 21 19 24 24 C 1.37876 * 120.00123 * 180.02562 * 22 21 19 25 25 N 1.31517 * 119.99940 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99672 * 359.97438 * 24 22 21 27 27 H 1.48497 * 109.47217 * 90.00375 * 26 24 22 28 28 H 1.48507 * 109.46931 * 209.99991 * 26 24 22 29 29 H 1.48492 * 109.47573 * 329.99848 * 26 24 22 30 30 H 1.09003 * 109.47354 * 176.48024 * 1 2 3 31 31 H 1.09008 * 109.46813 * 296.47224 * 1 2 3 32 32 H 1.08994 * 109.47743 * 56.47668 * 1 2 3 33 33 H 1.08994 * 109.47392 * 295.16843 * 6 4 2 34 34 H 1.09003 * 109.46901 * 55.17167 * 6 4 2 35 35 H 0.97003 * 120.00186 * 0.02562 * 7 6 4 36 36 H 1.08997 * 109.46773 * 60.00046 * 12 11 10 37 37 H 1.09001 * 109.46853 * 179.97438 * 12 11 10 38 38 H 1.08999 * 109.46843 * 300.00140 * 12 11 10 39 39 H 1.09001 * 109.46846 * 59.99416 * 13 11 10 40 40 H 1.08992 * 109.46975 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.46527 * 300.00285 * 13 11 10 42 42 H 1.09000 * 109.47431 * 60.00224 * 14 11 10 43 43 H 1.09009 * 109.46725 * 180.02562 * 14 11 10 44 44 H 1.08999 * 109.47202 * 299.99509 * 14 11 10 45 45 H 1.09007 * 109.45603 * 178.59889 * 15 4 2 46 46 H 1.08997 * 109.45639 * 58.63755 * 15 4 2 47 47 H 1.09009 * 109.49890 * 181.32382 * 16 15 4 48 48 H 1.08996 * 109.50258 * 301.38855 * 16 15 4 49 49 H 1.08994 * 109.58865 * 65.14790 * 17 16 15 50 50 H 1.09004 * 109.58806 * 185.43337 * 17 16 15 51 51 H 1.08993 * 109.47464 * 299.99895 * 21 19 18 52 52 H 1.09001 * 109.47418 * 60.00863 * 21 19 18 53 53 H 0.96998 * 119.99925 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0465 -0.7293 1.2442 5 1 1.6082 -1.7262 1.2900 6 6 1.6567 0.0588 2.4963 7 7 2.0489 -0.6951 3.6897 8 6 1.8030 -0.1921 4.9156 9 8 1.2563 0.8869 5.0311 10 8 2.1639 -0.8848 6.0123 11 6 1.8683 -0.2818 7.2997 12 6 0.3588 -0.0666 7.4275 13 6 2.3475 -1.2084 8.4189 14 6 2.5864 1.0647 7.4090 15 6 3.5707 -0.8445 1.1670 16 6 3.9601 -1.6608 -0.0674 17 6 3.4653 -0.9424 -1.3267 18 7 2.0225 -0.6980 -1.1956 19 6 1.1669 -1.1059 -2.1537 20 8 -0.0286 -0.9818 -1.9921 21 6 1.6960 -1.7161 -3.4260 22 6 0.5430 -2.0834 -4.3243 23 1 -0.4714 -1.8942 -4.0055 24 6 0.7831 -2.6619 -5.5526 25 7 -0.2232 -2.9828 -6.3363 26 14 2.5376 -2.9897 -6.1036 27 1 2.9498 -4.3463 -5.6620 28 1 2.6152 -2.9063 -7.5843 29 1 3.4426 -1.9773 -5.5027 30 1 -0.3634 -1.0257 -0.0631 31 1 -0.3633 0.4581 0.9200 32 1 -0.3634 0.5675 -0.8566 33 1 2.1655 1.0227 2.4920 34 1 0.5783 0.2172 2.5048 35 1 2.4857 -1.5563 3.5975 36 1 -0.1527 -1.0259 7.3495 37 1 0.1369 0.3856 8.3941 38 1 0.0171 0.5933 6.6301 39 1 3.4227 -1.3620 8.3279 40 1 2.1251 -0.7559 9.3853 41 1 1.8355 -2.1675 8.3407 42 1 2.2446 1.7247 6.6117 43 1 2.3648 1.5172 8.3757 44 1 3.6617 0.9115 7.3180 45 1 3.9431 -1.3410 2.0631 46 1 4.0070 0.1518 1.0961 47 1 5.0447 -1.7625 -0.1090 48 1 3.5041 -2.6491 -0.0088 49 1 3.9885 0.0077 -1.4348 50 1 3.6545 -1.5653 -2.2010 51 1 2.3376 -0.9967 -3.9347 52 1 2.2709 -2.6111 -3.1881 53 1 -0.0542 -3.3894 -7.2005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194099.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:07 Heat of formation + Delta-G solvation = -139.348167 kcal Electronic energy + Delta-G solvation = -30924.361187 eV Core-core repulsion = 26795.356338 eV Total energy + Delta-G solvation = -4129.004849 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.87545 -41.42119 -39.11984 -38.05920 -36.17140 -35.21505 -34.97944 -33.83502 -33.45904 -31.47290 -28.96861 -28.34168 -28.27292 -27.09342 -25.88003 -24.53426 -23.06589 -22.61009 -21.56056 -20.94804 -19.78144 -19.19603 -19.02803 -17.71342 -17.38348 -17.26807 -16.96804 -16.48985 -16.32732 -15.88425 -15.76702 -15.51896 -15.26192 -15.17588 -14.89067 -14.47086 -14.42867 -14.25098 -13.88357 -13.82565 -13.37483 -13.34600 -13.28790 -13.22589 -13.02392 -12.88760 -12.83990 -12.66114 -12.65370 -12.45491 -12.33588 -12.29411 -12.00561 -11.86267 -11.83017 -11.68433 -11.45870 -11.36998 -11.31321 -11.11464 -10.77956 -10.20952 -9.80407 -9.43724 -8.25417 -6.33564 1.15643 1.38341 1.43058 1.53297 1.77733 1.89408 2.14957 2.38551 3.07749 3.16332 3.60186 3.69671 3.75869 3.77761 3.82284 3.97157 4.07590 4.13742 4.23371 4.28082 4.37926 4.47692 4.51579 4.59208 4.63750 4.69210 4.71136 4.77015 4.78622 4.78910 4.85120 4.88339 4.90227 4.91768 5.03616 5.06400 5.10790 5.12574 5.17943 5.22713 5.25640 5.30352 5.37932 5.40709 5.49273 5.53237 5.59969 5.82538 6.25774 6.40452 6.57658 6.84686 7.27355 7.35064 7.53408 8.92102 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026420 B = 0.002108 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.545714 B =13277.456149 C =13728.985213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.153 3.847 3 H 0.088 0.912 4 C -0.099 4.099 5 H 0.074 0.926 6 C 0.150 3.850 7 N -0.697 5.697 8 C 0.645 3.355 9 O -0.594 6.594 10 O -0.369 6.369 11 C 0.125 3.875 12 C -0.181 4.181 13 C -0.136 4.136 14 C -0.179 4.179 15 C -0.109 4.109 16 C -0.129 4.129 17 C 0.095 3.905 18 N -0.615 5.615 19 C 0.517 3.483 20 O -0.568 6.568 21 C -0.024 4.024 22 C -0.531 4.531 23 H 0.028 0.972 24 C -0.001 4.001 25 N -0.954 5.954 26 Si 0.959 3.041 27 H -0.261 1.261 28 H -0.287 1.287 29 H -0.229 1.229 30 H 0.042 0.958 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.416 0.584 36 H 0.059 0.941 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.105 0.895 48 H 0.058 0.942 49 H 0.088 0.912 50 H 0.085 0.915 51 H 0.063 0.937 52 H 0.063 0.937 53 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.169 4.984 29.655 34.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.105 0.895 4 C -0.119 4.119 5 H 0.092 0.908 6 C 0.027 3.973 7 N -0.358 5.358 8 C 0.398 3.602 9 O -0.485 6.485 10 O -0.284 6.284 11 C 0.089 3.911 12 C -0.239 4.239 13 C -0.193 4.193 14 C -0.236 4.236 15 C -0.146 4.146 16 C -0.167 4.167 17 C -0.026 4.026 18 N -0.350 5.350 19 C 0.307 3.693 20 O -0.447 6.447 21 C -0.063 4.063 22 C -0.569 4.569 23 H 0.047 0.953 24 C -0.197 4.197 25 N -0.595 5.595 26 Si 0.780 3.220 27 H -0.186 1.186 28 H -0.213 1.213 29 H -0.151 1.151 30 H 0.061 0.939 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.253 0.747 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.086 0.914 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.103 0.897 46 H 0.099 0.901 47 H 0.123 0.877 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.103 0.897 51 H 0.081 0.919 52 H 0.080 0.920 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 15.225 5.513 29.719 33.844 hybrid contribution -0.304 -0.613 -1.032 1.238 sum 14.920 4.901 28.687 32.705 Atomic orbital electron populations 1.22079 0.94568 1.01924 1.00086 1.21146 0.94273 0.95777 0.83834 0.89458 1.21699 0.98422 0.99634 0.92103 0.90789 1.21288 1.00342 0.94715 0.80924 1.44654 1.63939 1.25026 1.02132 1.18250 0.77627 0.82253 0.82061 1.90904 1.47926 1.23000 1.86645 1.86312 1.77061 1.50105 1.14890 1.22403 0.95804 0.94286 0.78650 1.22486 0.94426 1.02725 1.04215 1.21884 1.02538 0.99140 0.95725 1.22464 1.00576 0.96311 1.04243 1.21603 0.92476 1.01837 0.98689 1.21913 1.02692 0.98769 0.93348 1.22049 0.78531 1.01937 1.00132 1.48271 1.08245 1.58664 1.19812 1.21138 0.86112 0.76775 0.85240 1.90647 1.18171 1.56113 1.79780 1.19596 0.97363 0.97937 0.91446 1.21202 0.93457 1.40439 1.01809 0.95345 1.26159 1.03034 0.94471 0.96037 1.70102 1.34191 1.43890 1.11289 0.85566 0.78578 0.80382 0.77496 1.18552 1.21280 1.15110 0.93886 0.92045 0.93932 0.90260 0.91889 0.74718 0.92215 0.89143 0.92066 0.90988 0.88053 0.91392 0.91958 0.89245 0.91717 0.89689 0.90117 0.87683 0.92297 0.89388 0.89664 0.91886 0.91962 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.24 7.44 71.98 0.54 -3.71 16 2 C 0.15 3.95 2.95 44.97 0.13 4.08 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C -0.10 -1.84 1.85 -10.72 -0.02 -1.86 16 5 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 6 C 0.15 2.74 4.94 86.38 0.43 3.17 16 7 N -0.70 -12.00 5.28 -590.86 -3.12 -15.12 16 8 C 0.64 14.06 8.06 129.79 1.05 15.10 16 9 O -0.59 -16.04 11.88 19.82 0.24 -15.81 16 10 O -0.37 -7.08 9.94 -55.48 -0.55 -7.63 16 11 C 0.12 1.92 1.13 -10.79 -0.01 1.90 16 12 C -0.18 -2.94 8.37 71.98 0.60 -2.33 16 13 C -0.14 -1.25 8.85 71.98 0.64 -0.61 16 14 C -0.18 -2.65 8.37 71.98 0.60 -2.05 16 15 C -0.11 -1.42 5.05 30.62 0.15 -1.27 16 16 C -0.13 -1.94 6.08 30.67 0.19 -1.76 16 17 C 0.10 2.03 6.32 86.36 0.55 2.57 16 18 N -0.62 -18.78 2.97 -795.02 -2.36 -21.14 16 19 C 0.52 22.40 7.60 87.66 0.67 23.07 16 20 O -0.57 -29.61 10.86 -3.01 -0.03 -29.64 16 21 C -0.02 -1.09 2.93 29.11 0.09 -1.00 16 22 C -0.53 -32.02 9.48 25.60 0.24 -31.78 16 23 H 0.03 2.02 7.00 -2.91 -0.02 2.00 16 24 C 0.00 -0.06 5.47 84.65 0.46 0.41 16 25 N -0.95 -61.55 13.96 21.45 0.30 -61.25 16 26 Si 0.96 41.91 27.47 68.60 1.88 43.80 16 27 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 28 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 29 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 30 H 0.04 1.66 6.76 -2.39 -0.02 1.65 16 31 H 0.06 1.66 6.38 -2.38 -0.02 1.64 16 32 H 0.04 1.67 6.74 -2.39 -0.02 1.65 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.06 1.38 6.34 -2.39 -0.02 1.36 16 35 H 0.42 5.38 7.76 -92.71 -0.72 4.66 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 1.36 5.88 -2.39 -0.01 1.35 16 39 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 1.29 5.88 -2.39 -0.01 1.27 16 43 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.08 0.82 7.15 -2.38 -0.02 0.80 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 48 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 49 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.08 1.94 5.97 -2.38 -0.01 1.93 16 51 H 0.06 2.65 7.17 -2.39 -0.02 2.63 16 52 H 0.06 2.56 6.91 -2.39 -0.02 2.55 16 53 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -82.09 400.23 2.78 -79.31 By element: Atomic # 1 Polarization: 23.42 SS G_CDS: 0.13 Total: 23.54 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.30 Total: 3.94 kcal Atomic # 7 Polarization: -92.33 SS G_CDS: -5.18 Total: -97.52 kcal Atomic # 8 Polarization: -52.73 SS G_CDS: -0.35 Total: -53.08 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 1.88 Total: 43.80 kcal Total: -82.09 2.78 -79.31 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194099.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.034 kcal (2) G-P(sol) polarization free energy of solvation -82.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds