Wall clock time and date at job start Tue Mar 31 2020 23:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42905 * 113.99413 * 2 1 4 4 C 1.52999 * 109.46579 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46971 * 175.31818 * 4 3 2 6 6 N 1.46495 * 109.45961 * 305.33002 * 5 4 3 7 7 C 1.34775 * 120.00137 * 295.35577 * 6 5 4 8 8 O 1.21280 * 120.00015 * 5.24361 * 7 6 5 9 9 C 1.50700 * 119.99854 * 185.24892 * 7 6 5 10 10 H 1.08992 * 109.82799 * 55.56169 * 9 7 6 11 11 C 1.54386 * 109.82853 * 294.58102 * 9 7 6 12 12 C 1.55306 * 102.25154 * 219.13132 * 11 9 7 13 13 H 1.09001 * 111.13101 * 276.21187 * 12 11 9 14 14 C 1.53003 * 111.12074 * 152.05530 * 12 11 9 15 15 C 1.54944 * 100.94209 * 34.13812 * 12 11 9 16 16 O 1.43244 * 109.83141 * 176.45244 * 9 7 6 17 17 C 1.53036 * 109.45830 * 185.36921 * 5 4 3 18 18 C 1.53204 * 109.31124 * 178.61417 * 17 5 4 19 19 N 1.46929 * 108.77304 * 54.63720 * 18 17 5 20 20 C 1.36933 * 120.63015 * 126.36700 * 19 18 17 21 21 H 1.08003 * 120.00014 * 328.48843 * 20 19 18 22 22 C 1.38814 * 119.99717 * 148.48404 * 20 19 18 23 23 N 1.31619 * 120.00187 * 345.28855 * 22 20 19 24 24 Si 1.86799 * 119.99701 * 165.28606 * 22 20 19 25 25 H 1.48498 * 109.47487 * 90.00322 * 24 22 20 26 26 H 1.48506 * 109.46859 * 210.00157 * 24 22 20 27 27 H 1.48502 * 109.47335 * 330.00032 * 24 22 20 28 28 C 1.46930 * 118.73732 * 306.39422 * 19 18 17 29 29 C 1.53044 * 109.45854 * 65.30106 * 5 4 3 30 30 H 1.08996 * 109.47495 * 299.99988 * 1 2 3 31 31 H 1.08998 * 109.47174 * 60.00173 * 1 2 3 32 32 H 1.09000 * 109.47105 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46815 * 60.00448 * 3 2 1 34 34 H 1.08995 * 109.47638 * 299.99951 * 3 2 1 35 35 H 1.08996 * 109.47611 * 295.32077 * 4 3 2 36 36 H 1.09002 * 109.47118 * 55.32353 * 4 3 2 37 37 H 0.97004 * 119.99956 * 115.35576 * 6 5 4 38 38 H 1.08998 * 110.84772 * 337.32336 * 11 9 7 39 39 H 1.08999 * 110.84272 * 100.94701 * 11 9 7 40 40 H 1.09000 * 109.47087 * 306.98366 * 14 12 11 41 41 H 1.09000 * 109.47168 * 66.99001 * 14 12 11 42 42 H 1.09005 * 109.47079 * 186.98831 * 14 12 11 43 43 H 1.09001 * 110.30620 * 204.64006 * 15 12 11 44 44 H 1.08996 * 110.39415 * 82.51171 * 15 12 11 45 45 H 1.08997 * 109.50340 * 298.56484 * 17 5 4 46 46 H 1.08997 * 109.49945 * 58.66691 * 17 5 4 47 47 H 1.08994 * 109.58273 * 294.85366 * 18 17 5 48 48 H 1.08998 * 109.70193 * 174.49081 * 18 17 5 49 49 H 0.96999 * 120.00268 * 180.02562 * 23 22 20 50 50 H 1.08999 * 109.58224 * 293.81665 * 28 19 18 51 51 H 1.08998 * 109.70378 * 173.46783 * 28 19 18 52 52 H 1.08995 * 109.49870 * 301.34200 * 29 5 4 53 53 H 1.09003 * 109.49289 * 61.43790 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1573 2.5777 -0.1171 6 7 3.6191 3.2541 -1.2999 7 6 3.8737 2.7655 -2.5298 8 8 4.4668 1.7149 -2.6542 9 6 3.4214 3.5245 -3.7506 10 1 3.8191 4.5389 -3.7236 11 6 1.8788 3.5658 -3.7999 12 6 1.5924 3.3793 -5.3148 13 1 1.6589 4.3282 -5.8471 14 6 0.2316 2.7175 -5.5412 15 6 2.7489 2.4303 -5.7182 16 8 3.8744 2.8562 -4.9339 17 6 5.6763 2.4482 -0.2512 18 6 6.2922 3.8426 -0.4036 19 7 5.8550 4.6784 0.7230 20 6 6.7708 5.3326 1.5030 21 1 7.7475 4.9013 1.6660 22 6 6.4438 6.5500 2.0842 23 7 5.3876 7.2157 1.6675 24 14 7.5027 7.2435 3.4580 25 1 8.5747 8.0911 2.8769 26 1 6.6609 8.0634 4.3660 27 1 8.1143 6.1273 4.2231 28 6 4.4165 4.7984 0.9970 29 6 3.8216 3.3934 1.1336 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.8626 0.7181 0.9297 36 1 3.8518 0.5731 -0.8443 37 1 3.0795 4.0538 -1.1978 38 1 1.4502 2.7482 -3.2204 39 1 1.5053 4.5282 -3.4501 40 1 0.1740 1.7972 -4.9600 41 1 -0.5600 3.3970 -5.2252 42 1 0.1113 2.4868 -6.5997 43 1 2.9683 2.5319 -6.7810 44 1 2.4925 1.3975 -5.4824 45 1 6.0805 1.9673 0.6396 46 1 5.9141 1.8476 -1.1291 47 1 5.9589 4.2888 -1.3405 48 1 7.3795 3.7663 -0.4015 49 1 5.1593 8.0666 2.0734 50 1 3.9303 5.3226 0.1742 51 1 4.2638 5.3515 1.9237 52 1 2.7394 3.4653 1.2414 53 1 4.2433 2.9035 2.0113 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151216334.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:15 Heat of formation + Delta-G solvation = -130.344152 kcal Electronic energy + Delta-G solvation = -32714.810592 eV Core-core repulsion = 28586.196187 eV Total energy + Delta-G solvation = -4128.614405 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.90346 -40.43831 -38.75235 -38.44678 -36.19284 -34.57859 -33.80135 -33.18637 -31.66865 -31.00334 -30.31213 -27.66159 -27.28478 -26.41920 -24.89681 -24.53656 -23.74034 -22.14415 -21.78025 -21.27347 -20.17737 -18.82616 -18.45127 -17.74595 -17.50598 -16.98642 -16.77148 -16.64525 -16.35487 -15.86249 -15.70309 -15.65988 -15.25376 -15.21279 -14.89535 -14.62372 -14.47376 -14.22252 -14.05219 -13.86139 -13.74388 -13.27634 -13.18444 -13.01671 -12.89485 -12.69707 -12.65069 -12.53609 -12.34179 -12.20579 -12.17881 -12.10473 -11.96040 -11.93443 -11.79994 -11.62096 -11.33117 -11.27375 -11.00536 -10.57652 -10.53502 -10.12674 -9.93757 -8.59150 -7.86970 -5.34350 1.46967 1.49022 1.58029 1.63920 2.10451 2.51904 2.80311 2.92470 3.28966 3.37957 3.60382 3.70355 3.77542 3.83334 3.96987 4.05133 4.10719 4.14801 4.20306 4.31113 4.37889 4.43761 4.51543 4.53175 4.53668 4.57009 4.66722 4.68235 4.75619 4.78361 4.81279 4.82745 4.87880 4.90405 4.96954 5.00471 5.03750 5.10700 5.17292 5.21954 5.25126 5.29994 5.38217 5.47345 5.66199 5.66683 5.76679 5.89915 6.25412 6.42504 6.66709 7.18658 7.33640 7.86528 8.40599 9.18750 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011515 B = 0.003683 C = 0.003168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.097035 B = 7600.916113 C = 8836.484686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.073 3.927 4 C -0.118 4.118 5 C 0.203 3.797 6 N -0.703 5.703 7 C 0.502 3.498 8 O -0.560 6.560 9 C 0.061 3.939 10 H 0.111 0.889 11 C -0.136 4.136 12 C -0.116 4.116 13 H 0.103 0.897 14 C -0.137 4.137 15 C 0.043 3.957 16 O -0.383 6.383 17 C -0.133 4.133 18 C 0.156 3.844 19 N -0.604 5.604 20 C -0.269 4.269 21 H 0.055 0.945 22 C -0.037 4.037 23 N -0.926 5.926 24 Si 0.962 3.038 25 H -0.288 1.288 26 H -0.288 1.288 27 H -0.275 1.275 28 C 0.183 3.817 29 C -0.132 4.132 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.096 0.904 33 H 0.062 0.938 34 H 0.051 0.949 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.408 0.592 38 H 0.078 0.922 39 H 0.116 0.884 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.038 0.962 49 H 0.251 0.749 50 H 0.014 0.986 51 H 0.053 0.947 52 H 0.087 0.913 53 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.229 -8.357 -10.416 21.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.003 4.003 4 C -0.157 4.157 5 C 0.117 3.883 6 N -0.356 5.356 7 C 0.289 3.711 8 O -0.438 6.438 9 C 0.000 4.000 10 H 0.129 0.871 11 C -0.173 4.173 12 C -0.135 4.135 13 H 0.122 0.878 14 C -0.194 4.194 15 C -0.033 4.033 16 O -0.302 6.302 17 C -0.173 4.173 18 C 0.031 3.969 19 N -0.327 5.327 20 C -0.399 4.399 21 H 0.072 0.928 22 C -0.234 4.234 23 N -0.571 5.571 24 Si 0.790 3.210 25 H -0.214 1.214 26 H -0.214 1.214 27 H -0.200 1.200 28 C 0.057 3.943 29 C -0.172 4.172 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.244 0.756 38 H 0.097 0.903 39 H 0.134 0.866 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.071 0.929 45 H 0.080 0.920 46 H 0.087 0.913 47 H 0.026 0.974 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.032 0.968 51 H 0.072 0.928 52 H 0.105 0.895 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.515 -9.151 -10.509 20.854 hybrid contribution 0.512 1.132 0.850 1.506 sum -15.002 -8.019 -9.659 19.562 Atomic orbital electron populations 1.22917 0.79541 1.03727 1.00842 1.87845 1.21535 1.28898 1.95585 1.22461 0.92954 0.84217 1.00647 1.21794 0.94358 0.96632 1.02880 1.19979 0.92393 0.90936 0.84953 1.46006 1.53896 1.30918 1.04815 1.21321 0.78878 0.85628 0.85282 1.90615 1.42094 1.24283 1.86845 1.22775 0.97328 0.95895 0.83979 0.87105 1.23236 0.90599 1.05255 0.98243 1.22865 0.95956 1.00159 0.94499 0.87829 1.21658 0.94533 1.00532 1.02725 1.23742 0.85363 0.97792 0.96400 1.88498 1.32144 1.76750 1.32772 1.22228 0.95233 0.98052 1.01772 1.20791 0.96499 0.90205 0.89454 1.44192 1.02584 1.54668 1.31291 1.19388 0.96969 0.99730 1.23841 0.92753 1.25731 0.99435 0.95726 1.02473 1.70109 1.29420 1.14585 1.42992 0.85380 0.78173 0.77970 0.79487 1.21443 1.21423 1.19995 1.20546 0.82609 0.92129 0.98967 1.22392 1.01216 0.97619 0.95932 0.93004 0.93351 0.88591 0.92018 0.93084 0.90846 0.91775 0.75581 0.90335 0.86560 0.92922 0.90740 0.91049 0.87961 0.92871 0.92004 0.91349 0.97433 0.94318 0.93955 0.96817 0.92842 0.89493 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.13 10.70 -148.98 -1.59 -12.73 16 3 C 0.07 1.86 5.45 71.98 0.39 2.25 16 4 C -0.12 -3.58 4.40 30.60 0.13 -3.44 16 5 C 0.20 6.56 0.35 3.63 0.00 6.56 16 6 N -0.70 -20.43 2.96 -422.80 -1.25 -21.68 16 7 C 0.50 15.83 6.23 87.66 0.55 16.38 16 8 O -0.56 -22.05 12.83 15.76 0.20 -21.85 16 9 C 0.06 1.56 3.95 30.32 0.12 1.68 16 10 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 11 C -0.14 -2.27 6.00 31.86 0.19 -2.08 16 12 C -0.12 -1.66 3.69 -9.34 -0.03 -1.69 16 13 H 0.10 1.24 8.14 -2.39 -0.02 1.23 16 14 C -0.14 -1.44 9.31 71.98 0.67 -0.77 16 15 C 0.04 0.87 7.26 72.65 0.53 1.39 16 16 O -0.38 -11.22 10.56 -130.19 -1.38 -12.59 16 17 C -0.13 -5.09 4.59 30.67 0.14 -4.95 16 18 C 0.16 6.92 6.26 86.37 0.54 7.46 16 19 N -0.60 -29.61 2.98 -699.08 -2.08 -31.70 16 20 C -0.27 -14.73 9.56 84.03 0.80 -13.93 16 21 H 0.05 3.00 7.87 -2.91 -0.02 2.98 16 22 C -0.04 -2.02 4.95 84.86 0.42 -1.60 16 23 N -0.93 -51.98 11.31 21.65 0.24 -51.74 16 24 Si 0.96 44.11 29.58 68.60 2.03 46.14 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 27 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 28 C 0.18 7.94 4.99 86.36 0.43 8.37 16 29 C -0.13 -4.40 4.73 30.67 0.15 -4.26 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.06 1.40 6.77 -2.39 -0.02 1.38 16 34 H 0.05 1.22 7.29 -2.39 -0.02 1.20 16 35 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.06 2.28 6.49 -2.39 -0.02 2.26 16 37 H 0.41 10.40 7.43 -92.70 -0.69 9.71 16 38 H 0.08 1.38 7.70 -2.39 -0.02 1.36 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 41 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.05 1.14 8.03 -2.39 -0.02 1.12 16 45 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 46 H 0.07 2.76 6.06 -2.39 -0.01 2.75 16 47 H 0.01 0.35 7.55 -2.39 -0.02 0.33 16 48 H 0.04 1.77 7.93 -2.39 -0.02 1.75 16 49 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 50 H 0.01 0.60 7.03 -2.39 -0.02 0.58 16 51 H 0.05 2.66 6.26 -2.39 -0.01 2.65 16 52 H 0.09 2.35 6.62 -2.39 -0.02 2.33 16 53 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -70.29 402.13 2.65 -67.64 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.20 Total: 25.44 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.28 Total: 13.07 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -3.09 Total: -105.11 kcal Atomic # 8 Polarization: -44.40 SS G_CDS: -2.77 Total: -47.17 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -70.29 2.65 -67.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151216334.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.706 kcal (2) G-P(sol) polarization free energy of solvation -70.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds