Wall clock time and date at job start Tue Mar 31 2020 23:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00254 * 2 1 4 4 C 1.52998 * 109.47200 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47326 * 179.64215 * 4 3 2 6 6 N 1.46492 * 109.45992 * 305.63127 * 5 4 3 7 7 C 1.34773 * 120.00017 * 301.50949 * 6 5 4 8 8 O 1.21275 * 120.00109 * 355.53543 * 7 6 5 9 9 C 1.50706 * 120.00068 * 175.54008 * 7 6 5 10 10 H 1.08999 * 110.41864 * 57.31136 * 9 7 6 11 11 C 1.54478 * 110.37085 * 295.00023 * 9 7 6 12 12 C 1.54510 * 104.06169 * 217.19337 * 11 9 7 13 13 H 1.08993 * 110.51460 * 118.64282 * 12 11 9 14 14 C 1.53007 * 110.51089 * 241.21967 * 12 11 9 15 15 C 1.54484 * 104.06300 * 359.97438 * 12 11 9 16 16 O 1.44426 * 110.37112 * 179.61617 * 9 7 6 17 17 C 1.53049 * 109.45699 * 65.60326 * 5 4 3 18 18 C 1.53167 * 109.32251 * 181.38667 * 17 5 4 19 19 N 1.46919 * 108.76949 * 305.35178 * 18 17 5 20 20 C 1.36942 * 120.63227 * 233.63510 * 19 18 17 21 21 H 1.08003 * 119.99840 * 150.74786 * 20 19 18 22 22 C 1.38805 * 119.99920 * 330.74544 * 20 19 18 23 23 N 1.31621 * 120.00385 * 160.57264 * 22 20 19 24 24 Si 1.86803 * 120.00174 * 340.57293 * 22 20 19 25 25 H 1.48502 * 109.47094 * 90.16812 * 24 22 20 26 26 H 1.48495 * 109.47354 * 210.16834 * 24 22 20 27 27 H 1.48502 * 109.47159 * 330.17186 * 24 22 20 28 28 C 1.46928 * 118.73782 * 53.61256 * 19 18 17 29 29 C 1.53045 * 109.46196 * 185.65493 * 5 4 3 30 30 H 1.08999 * 109.46853 * 60.00099 * 1 2 3 31 31 H 1.08996 * 109.47610 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47264 * 300.00449 * 1 2 3 33 33 H 1.09000 * 109.47376 * 59.99776 * 3 2 1 34 34 H 1.09005 * 109.46689 * 300.00092 * 3 2 1 35 35 H 1.09002 * 109.47384 * 59.64379 * 4 3 2 36 36 H 1.09003 * 109.46909 * 299.64212 * 4 3 2 37 37 H 0.97008 * 120.00209 * 121.51028 * 6 5 4 38 38 H 1.08996 * 110.51068 * 98.54850 * 11 9 7 39 39 H 1.09006 * 110.51042 * 335.83418 * 11 9 7 40 40 H 1.09003 * 109.47043 * 59.99309 * 14 12 11 41 41 H 1.08998 * 109.47480 * 180.02562 * 14 12 11 42 42 H 1.09008 * 109.46619 * 299.99993 * 14 12 11 43 43 H 1.08999 * 110.37079 * 142.81444 * 15 12 11 44 44 H 1.08994 * 110.37603 * 265.15029 * 15 12 11 45 45 H 1.08993 * 109.49623 * 301.32272 * 17 5 4 46 46 H 1.08995 * 109.49802 * 61.42071 * 17 5 4 47 47 H 1.09005 * 109.58390 * 185.56597 * 18 17 5 48 48 H 1.08992 * 109.71176 * 65.21273 * 18 17 5 49 49 H 0.96997 * 120.00736 * 180.02562 * 23 22 20 50 50 H 1.09006 * 109.58578 * 186.60228 * 28 19 18 51 51 H 1.09000 * 109.70586 * 66.25002 * 28 19 18 52 52 H 1.08999 * 109.49552 * 298.57982 * 29 5 4 53 53 H 1.08992 * 109.49337 * 58.64578 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5822 -0.0097 6 7 3.6203 3.3486 -1.1365 7 6 3.7690 2.8903 -2.3952 8 8 4.4172 1.8865 -2.6024 9 6 3.1300 3.6255 -3.5452 10 1 3.4732 4.6596 -3.5731 11 6 1.5906 3.5726 -3.4282 12 6 1.1078 3.4302 -4.8890 13 1 0.5604 2.4970 -5.0212 14 6 0.2346 4.6230 -5.2838 15 6 2.4127 3.4145 -5.7158 16 8 3.4284 2.9629 -4.7933 17 6 3.8219 3.2983 1.3006 18 6 4.4170 4.7094 1.2739 19 7 5.8555 4.6105 0.9923 20 6 6.7711 5.2018 1.8215 21 1 7.7600 4.7795 1.9225 22 6 6.4282 6.3439 2.5319 23 7 7.1274 6.6954 3.5902 24 14 4.9742 7.3820 1.9862 25 1 3.7411 6.8989 2.6581 26 1 5.2139 8.8010 2.3524 27 1 4.8116 7.2713 0.5143 28 6 6.2932 3.8647 -0.1955 29 6 5.6769 2.4630 -0.1525 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8563 0.6383 -0.8876 36 1 3.8578 0.6490 0.8923 37 1 3.1572 4.1859 -0.9767 38 1 1.2092 4.4939 -2.9880 39 1 1.2818 2.7097 -2.8381 40 1 0.8119 5.5428 -5.1897 41 1 -0.0966 4.5053 -6.3155 42 1 -0.6340 4.6705 -4.6269 43 1 2.3240 2.7205 -6.5516 44 1 2.6455 4.4164 -6.0765 45 1 2.7397 3.3623 1.4130 46 1 4.2428 2.7416 2.1377 47 1 4.2660 5.1879 2.2416 48 1 3.9319 5.2983 0.4956 49 1 6.8876 7.4933 4.0869 50 1 7.3804 3.7860 -0.1975 51 1 5.9628 4.3817 -1.0965 52 1 6.0804 1.9142 0.6984 53 1 5.9150 1.9319 -1.0740 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151216335.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:19 Heat of formation + Delta-G solvation = -125.532903 kcal Electronic energy + Delta-G solvation = -32803.669416 eV Core-core repulsion = 28675.263643 eV Total energy + Delta-G solvation = -4128.405774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.96749 -40.49307 -38.80869 -38.65374 -36.31712 -34.56004 -33.95327 -33.33885 -32.07996 -31.07214 -30.49415 -27.69764 -27.15007 -26.36577 -25.08294 -24.57277 -24.17027 -22.21745 -21.83519 -21.40339 -20.24760 -19.02179 -18.55304 -17.65400 -17.31843 -17.05522 -16.90260 -16.76458 -16.25898 -16.16186 -15.86871 -15.54833 -15.51306 -15.29136 -14.99122 -14.93429 -14.55465 -14.27277 -14.22155 -13.98483 -13.89988 -13.52988 -13.35733 -13.17198 -13.08403 -12.73772 -12.69282 -12.47154 -12.34291 -12.23744 -12.19301 -12.05945 -11.98063 -11.76954 -11.65804 -11.60572 -11.44136 -11.30318 -10.95143 -10.70645 -10.59060 -10.33862 -10.04291 -8.88885 -8.13864 -5.49203 1.31331 1.45118 1.54741 1.59636 1.91298 2.44560 2.78363 3.05084 3.09245 3.33108 3.41186 3.60576 3.71070 3.84199 3.85409 3.95136 4.03008 4.14038 4.17863 4.26340 4.30209 4.31157 4.44163 4.46120 4.52055 4.53653 4.54743 4.60294 4.64731 4.67240 4.75953 4.82746 4.83328 4.87102 4.90995 4.93421 4.98125 5.03269 5.10047 5.10637 5.18294 5.21264 5.22761 5.32018 5.37095 5.59906 5.74414 5.89527 6.14839 6.24865 6.58259 6.93595 7.26645 7.62972 8.03525 9.06448 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010239 B = 0.004142 C = 0.003548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.062796 B = 6757.866811 C = 7889.984297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.121 4.121 5 C 0.204 3.796 6 N -0.706 5.706 7 C 0.519 3.481 8 O -0.555 6.555 9 C 0.054 3.946 10 H 0.108 0.892 11 C -0.135 4.135 12 C -0.119 4.119 13 H 0.085 0.915 14 C -0.140 4.140 15 C 0.038 3.962 16 O -0.381 6.381 17 C -0.129 4.129 18 C 0.120 3.880 19 N -0.614 5.614 20 C -0.253 4.253 21 H 0.041 0.959 22 C -0.036 4.036 23 N -0.961 5.961 24 Si 0.954 3.046 25 H -0.261 1.261 26 H -0.316 1.316 27 H -0.255 1.255 28 C 0.157 3.843 29 C -0.135 4.135 30 H 0.048 0.952 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.410 0.590 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.101 0.899 44 H 0.076 0.924 45 H 0.099 0.901 46 H 0.074 0.926 47 H 0.057 0.943 48 H 0.044 0.956 49 H 0.262 0.738 50 H 0.042 0.958 51 H 0.028 0.972 52 H 0.060 0.940 53 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.856 -5.920 -15.783 27.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.005 4.005 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.360 5.360 7 C 0.306 3.694 8 O -0.432 6.432 9 C -0.007 4.007 10 H 0.125 0.875 11 C -0.173 4.173 12 C -0.138 4.138 13 H 0.104 0.896 14 C -0.197 4.197 15 C -0.039 4.039 16 O -0.300 6.300 17 C -0.168 4.168 18 C -0.004 4.004 19 N -0.339 5.339 20 C -0.383 4.383 21 H 0.059 0.941 22 C -0.231 4.231 23 N -0.607 5.607 24 Si 0.781 3.219 25 H -0.187 1.187 26 H -0.245 1.245 27 H -0.180 1.180 28 C 0.032 3.968 29 C -0.175 4.175 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.119 0.881 44 H 0.094 0.906 45 H 0.118 0.882 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.061 0.939 51 H 0.046 0.954 52 H 0.079 0.921 53 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.084 -6.867 -15.877 27.273 hybrid contribution -0.083 1.243 0.329 1.289 sum -21.167 -5.624 -15.548 26.859 Atomic orbital electron populations 1.22916 0.79512 1.03723 1.00864 1.87846 1.21542 1.28934 1.95587 1.22509 0.92841 0.84319 1.00837 1.21781 0.94449 0.96320 1.03358 1.19976 0.92458 0.90180 0.85583 1.45968 1.58798 1.26320 1.04899 1.20580 0.79953 0.84807 0.84103 1.90655 1.40568 1.27186 1.84778 1.22994 0.96722 0.96639 0.84300 0.87469 1.23055 0.91069 1.04731 0.98476 1.22503 0.96690 1.01299 0.93305 0.89648 1.21809 0.99402 0.96165 1.02338 1.23836 0.86007 1.01101 0.92916 1.89259 1.51861 1.68493 1.20385 1.22290 1.01914 0.96739 0.95882 1.21448 0.83783 0.96030 0.99174 1.44387 1.01712 1.61652 1.26124 1.18807 0.95632 1.05493 1.18377 0.94134 1.26032 1.01521 0.98400 0.97104 1.69980 1.44808 1.27222 1.18697 0.85820 0.79731 0.76619 0.79715 1.18694 1.24510 1.17961 1.20845 0.97120 0.90866 0.87960 1.22256 0.95123 0.97972 1.02108 0.93320 0.88729 0.92900 0.91671 0.92970 0.91544 0.90640 0.75296 0.86861 0.90922 0.91862 0.91417 0.91251 0.88121 0.90573 0.88231 0.90744 0.92510 0.93862 0.92953 0.93940 0.95421 0.92123 0.90873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.43 10.70 -148.98 -1.59 -12.02 16 3 C 0.07 1.62 5.48 71.98 0.39 2.01 16 4 C -0.12 -3.35 4.29 30.59 0.13 -3.22 16 5 C 0.20 5.86 0.35 3.64 0.00 5.86 16 6 N -0.71 -17.50 3.18 -422.80 -1.34 -18.84 16 7 C 0.52 14.44 6.13 87.66 0.54 14.98 16 8 O -0.55 -20.26 12.85 15.36 0.20 -20.07 16 9 C 0.05 1.17 3.71 30.35 0.11 1.28 16 10 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 11 C -0.14 -1.91 6.25 31.61 0.20 -1.71 16 12 C -0.12 -1.45 3.71 -9.77 -0.04 -1.49 16 13 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 14 C -0.14 -1.07 8.97 71.98 0.65 -0.43 16 15 C 0.04 0.60 7.19 72.49 0.52 1.12 16 16 O -0.38 -9.95 10.91 -130.60 -1.43 -11.37 16 17 C -0.13 -3.74 4.76 30.67 0.15 -3.60 16 18 C 0.12 4.46 3.93 86.36 0.34 4.80 16 19 N -0.61 -27.84 2.74 -699.17 -1.92 -29.76 16 20 C -0.25 -14.29 10.03 84.03 0.84 -13.45 16 21 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 22 C -0.04 -2.06 5.24 84.86 0.44 -1.62 16 23 N -0.96 -59.89 13.97 21.65 0.30 -59.59 16 24 Si 0.95 43.67 24.35 68.60 1.67 45.34 16 25 H -0.26 -10.76 6.54 99.48 0.65 -10.11 16 26 H -0.32 -15.06 7.11 99.48 0.71 -14.35 16 27 H -0.26 -10.86 6.78 99.48 0.67 -10.19 16 28 C 0.16 6.37 6.26 86.36 0.54 6.91 16 29 C -0.13 -4.76 4.69 30.67 0.14 -4.61 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 33 H 0.07 1.27 6.57 -2.39 -0.02 1.25 16 34 H 0.05 1.09 6.28 -2.38 -0.01 1.08 16 35 H 0.07 2.20 6.39 -2.39 -0.02 2.19 16 36 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.41 8.22 7.23 -92.70 -0.67 7.55 16 38 H 0.11 1.01 7.73 -2.39 -0.02 0.99 16 39 H 0.07 1.14 7.00 -2.38 -0.02 1.12 16 40 H 0.06 0.47 8.09 -2.39 -0.02 0.45 16 41 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 43 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.08 1.00 7.83 -2.39 -0.02 0.98 16 45 H 0.10 2.16 6.53 -2.39 -0.02 2.14 16 46 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.06 2.36 4.60 -2.38 -0.01 2.35 16 48 H 0.04 1.43 5.89 -2.39 -0.01 1.41 16 49 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 50 H 0.04 1.84 7.93 -2.38 -0.02 1.82 16 51 H 0.03 1.09 7.74 -2.39 -0.02 1.07 16 52 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 53 H 0.07 2.72 6.17 -2.39 -0.01 2.71 16 Total: -1.00 -75.92 393.04 2.24 -73.68 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.14 Total: 24.12 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.21 Total: 8.51 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -2.96 Total: -108.19 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.82 Total: -43.46 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.67 Total: 45.34 kcal Total: -75.92 2.24 -73.68 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151216335.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.851 kcal (2) G-P(sol) polarization free energy of solvation -75.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds