Wall clock time and date at job start Tue Mar 31 2020 23:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99589 * 2 1 4 4 C 1.53006 * 109.46939 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47118 * 175.70217 * 4 3 2 6 6 N 1.46504 * 109.46135 * 302.68051 * 5 4 3 7 7 C 1.34781 * 120.00046 * 301.79903 * 6 5 4 8 8 O 1.21280 * 119.99685 * 354.96089 * 7 6 5 9 9 C 1.50696 * 120.00421 * 174.96409 * 7 6 5 10 10 H 1.08997 * 110.33221 * 304.30214 * 9 7 6 11 11 C 1.54487 * 110.37008 * 66.54525 * 9 7 6 12 12 C 1.54685 * 103.97832 * 142.73823 * 11 9 7 13 13 H 1.08993 * 110.58252 * 241.45145 * 12 11 9 14 14 C 1.53002 * 110.54004 * 118.80211 * 12 11 9 15 15 C 1.54478 * 104.07874 * 0.13710 * 12 11 9 16 16 O 1.44426 * 104.80754 * 335.92843 * 15 12 11 17 17 C 1.53035 * 109.46047 * 182.70982 * 5 4 3 18 18 C 1.53195 * 109.31337 * 178.59848 * 17 5 4 19 19 N 1.46922 * 108.76629 * 54.65578 * 18 17 5 20 20 C 1.36933 * 120.63454 * 126.36195 * 19 18 17 21 21 H 1.08001 * 120.00084 * 209.54164 * 20 19 18 22 22 C 1.38811 * 120.00249 * 29.53780 * 20 19 18 23 23 N 1.31624 * 119.99478 * 18.84159 * 22 20 19 24 24 Si 1.86797 * 120.00442 * 198.84780 * 22 20 19 25 25 H 1.48490 * 109.47352 * 94.98108 * 24 22 20 26 26 H 1.48501 * 109.46929 * 214.98601 * 24 22 20 27 27 H 1.48502 * 109.46835 * 334.97960 * 24 22 20 28 28 C 1.46929 * 118.73640 * 306.38383 * 19 18 17 29 29 C 1.53039 * 109.46495 * 62.65251 * 5 4 3 30 30 H 1.08997 * 109.46730 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.46889 * 299.99514 * 1 2 3 32 32 H 1.08996 * 109.47117 * 60.00082 * 1 2 3 33 33 H 1.09003 * 109.46798 * 60.00385 * 3 2 1 34 34 H 1.08994 * 109.47896 * 300.00163 * 3 2 1 35 35 H 1.09000 * 109.46838 * 295.70291 * 4 3 2 36 36 H 1.08998 * 109.46665 * 55.70152 * 4 3 2 37 37 H 0.96996 * 120.00518 * 121.78562 * 6 5 4 38 38 H 1.08996 * 110.50878 * 261.45554 * 11 9 7 39 39 H 1.09002 * 110.51052 * 24.16874 * 11 9 7 40 40 H 1.08994 * 109.47409 * 303.86884 * 14 12 11 41 41 H 1.08997 * 109.46788 * 63.86976 * 14 12 11 42 42 H 1.09001 * 109.46922 * 183.86458 * 14 12 11 43 43 H 1.09000 * 110.37612 * 217.09716 * 15 12 11 44 44 H 1.08999 * 110.47081 * 94.80508 * 15 12 11 45 45 H 1.08995 * 109.49749 * 298.56158 * 17 5 4 46 46 H 1.09004 * 109.49814 * 58.66100 * 17 5 4 47 47 H 1.09001 * 109.60175 * 294.86692 * 18 17 5 48 48 H 1.09001 * 109.70224 * 174.50563 * 18 17 5 49 49 H 0.97005 * 119.99992 * 180.02562 * 23 22 20 50 50 H 1.08997 * 109.58908 * 293.81692 * 28 19 18 51 51 H 1.09007 * 109.58843 * 173.39665 * 28 19 18 52 52 H 1.09002 * 109.49836 * 301.33950 * 29 5 4 53 53 H 1.08997 * 109.49437 * 61.39948 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1574 2.5784 -0.1075 6 7 3.6680 3.2386 -1.3203 7 6 3.8650 2.6671 -2.5249 8 8 4.5258 1.6541 -2.6147 9 6 3.2643 3.2867 -3.7603 10 1 2.1863 3.3971 -3.6427 11 6 3.9171 4.6574 -4.0462 12 6 4.0109 4.7120 -5.5892 13 1 5.0505 4.7882 -5.9074 14 6 3.1969 5.8869 -6.1352 15 6 3.4006 3.3700 -6.0505 16 8 3.5637 2.4831 -4.9224 17 6 5.6811 2.4529 -0.1749 18 6 6.2985 3.8475 -0.3182 19 7 5.8111 4.6952 0.7783 20 6 6.6907 5.3622 1.5886 21 1 6.4262 5.5740 2.6140 22 6 7.9224 5.7661 1.0920 23 7 8.1116 5.8529 -0.2077 24 14 9.3115 6.1863 2.2681 25 1 10.1766 4.9945 2.4584 26 1 10.1180 7.2985 1.7044 27 1 8.7441 6.6001 3.5766 28 6 4.3619 4.8133 0.9893 29 6 3.7662 3.4079 1.1177 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6885 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.8621 0.7119 0.9269 36 1 3.8522 0.5786 -0.8481 37 1 3.2020 4.0869 -1.2564 38 1 3.2888 5.4652 -3.6710 39 1 4.9110 4.7072 -3.6015 40 1 2.1660 5.8059 -5.7910 41 1 3.6264 6.8232 -5.7789 42 1 3.2187 5.8687 -7.2249 43 1 3.9397 2.9856 -6.9164 44 1 2.3436 3.4930 -6.2866 45 1 6.0483 1.9844 0.7382 46 1 5.9582 1.8424 -1.0344 47 1 6.0042 4.2813 -1.2739 48 1 7.3850 3.7752 -0.2690 49 1 8.9724 6.1348 -0.5548 50 1 3.9095 5.3258 0.1403 51 1 4.1702 5.3763 1.9029 52 1 2.6801 3.4772 1.1784 53 1 4.1510 2.9299 2.0185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151216336.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:24 Heat of formation + Delta-G solvation = -129.684081 kcal Electronic energy + Delta-G solvation = -32678.014874 eV Core-core repulsion = 28549.429092 eV Total energy + Delta-G solvation = -4128.585782 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.87653 -40.43763 -38.76624 -38.50774 -36.21257 -34.55651 -33.77094 -33.15441 -31.81473 -30.87600 -30.26584 -27.64130 -27.15155 -26.40640 -25.05582 -24.64002 -23.65075 -22.22197 -21.69859 -21.36678 -20.12667 -18.94950 -18.51626 -17.53543 -17.14215 -16.89629 -16.78806 -16.77002 -16.21559 -16.13050 -15.77800 -15.43166 -15.35361 -15.16843 -14.98931 -14.79623 -14.51188 -14.25097 -14.02006 -13.92854 -13.78233 -13.21505 -13.16678 -13.04085 -12.78912 -12.75328 -12.66206 -12.60597 -12.27577 -12.22640 -12.12021 -12.07235 -11.94898 -11.78728 -11.76392 -11.63434 -11.30727 -11.26427 -10.90783 -10.57726 -10.53027 -10.31861 -9.97755 -8.63964 -7.86699 -5.31520 1.44873 1.48220 1.55670 1.63738 1.96592 2.51360 2.82282 3.08061 3.28621 3.42719 3.65018 3.71057 3.80902 3.84254 3.94756 4.00914 4.10939 4.16402 4.20057 4.26824 4.35798 4.45938 4.52553 4.53759 4.55822 4.59226 4.64375 4.68767 4.73919 4.75961 4.84312 4.85396 4.87701 4.89601 5.00998 5.04753 5.11835 5.12936 5.17194 5.22076 5.26483 5.35546 5.36296 5.47501 5.61818 5.67690 5.71651 5.78010 6.28155 6.40034 6.64263 7.15837 7.32503 7.88250 8.40572 9.18926 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008243 B = 0.004576 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3395.909105 B = 6117.608306 C = 8704.271676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.422 6.422 3 C 0.073 3.927 4 C -0.122 4.122 5 C 0.204 3.796 6 N -0.700 5.700 7 C 0.515 3.485 8 O -0.561 6.561 9 C 0.063 3.937 10 H 0.125 0.875 11 C -0.138 4.138 12 C -0.123 4.123 13 H 0.071 0.929 14 C -0.136 4.136 15 C 0.043 3.957 16 O -0.382 6.382 17 C -0.140 4.140 18 C 0.199 3.801 19 N -0.604 5.604 20 C -0.260 4.260 21 H 0.069 0.931 22 C -0.047 4.047 23 N -0.931 5.931 24 Si 0.958 3.042 25 H -0.293 1.293 26 H -0.297 1.297 27 H -0.263 1.263 28 C 0.141 3.859 29 C -0.126 4.126 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.054 0.946 46 H 0.054 0.946 47 H -0.002 1.002 48 H 0.032 0.968 49 H 0.246 0.754 50 H 0.028 0.972 51 H 0.062 0.938 52 H 0.101 0.899 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.545 -2.335 -6.791 20.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.003 4.003 4 C -0.161 4.161 5 C 0.118 3.882 6 N -0.354 5.354 7 C 0.301 3.699 8 O -0.439 6.439 9 C 0.002 3.998 10 H 0.143 0.857 11 C -0.177 4.177 12 C -0.142 4.142 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.033 4.033 16 O -0.301 6.301 17 C -0.180 4.180 18 C 0.073 3.927 19 N -0.328 5.328 20 C -0.391 4.391 21 H 0.087 0.913 22 C -0.243 4.243 23 N -0.577 5.577 24 Si 0.787 3.213 25 H -0.221 1.221 26 H -0.224 1.224 27 H -0.188 1.188 28 C 0.016 3.984 29 C -0.165 4.165 30 H 0.112 0.888 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.247 0.753 38 H 0.130 0.870 39 H 0.066 0.934 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.117 0.883 44 H 0.107 0.893 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.016 0.984 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.081 0.919 52 H 0.119 0.881 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.796 -3.383 -6.919 20.313 hybrid contribution 1.327 0.884 0.325 1.627 sum -17.469 -2.499 -6.594 18.839 Atomic orbital electron populations 1.22918 0.79458 1.03701 1.00930 1.87851 1.21623 1.29061 1.95604 1.22489 0.92561 0.84261 1.00969 1.21799 0.94632 0.96676 1.02959 1.19995 0.92224 0.91385 0.84587 1.45880 1.59098 1.25451 1.04949 1.20679 0.80011 0.84127 0.85082 1.90645 1.39898 1.26828 1.86536 1.22975 1.00907 0.90549 0.85391 0.85744 1.23027 1.01408 0.95928 0.97293 1.22543 1.01175 0.96840 0.93673 0.91074 1.21776 0.99897 0.96013 1.01669 1.23804 1.01845 0.88384 0.89234 1.89238 1.91003 1.34590 1.15234 1.22385 0.95925 0.98920 1.00800 1.20219 0.96453 0.87232 0.88794 1.44230 1.01258 1.52029 1.35266 1.19499 0.97187 1.29878 0.92496 0.91311 1.25745 1.02024 0.99843 0.96652 1.70205 1.23226 1.51740 1.12489 0.85389 0.79839 0.76756 0.79326 1.22070 1.22372 1.18761 1.21087 0.83556 0.94582 0.99149 1.22291 1.01676 0.96567 0.95971 0.88782 0.92610 0.93459 0.91096 0.93172 0.90639 0.92262 0.75287 0.86957 0.93384 0.90805 0.92261 0.91003 0.88285 0.89329 0.92680 0.92770 0.98402 0.94906 0.94469 0.95435 0.91925 0.88097 0.90709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.20 10.70 -148.98 -1.59 -12.80 16 3 C 0.07 1.79 5.41 71.98 0.39 2.18 16 4 C -0.12 -3.74 4.35 30.59 0.13 -3.61 16 5 C 0.20 6.52 0.35 3.63 0.00 6.52 16 6 N -0.70 -20.27 3.18 -422.81 -1.34 -21.61 16 7 C 0.51 17.05 6.35 87.66 0.56 17.61 16 8 O -0.56 -23.97 12.82 15.34 0.20 -23.77 16 9 C 0.06 1.61 3.71 30.35 0.11 1.72 16 10 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 11 C -0.14 -3.30 6.28 31.67 0.20 -3.10 16 12 C -0.12 -2.46 3.72 -9.72 -0.04 -2.50 16 13 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 14 C -0.14 -1.84 8.95 71.98 0.64 -1.19 16 15 C 0.04 0.87 7.18 72.48 0.52 1.39 16 16 O -0.38 -11.47 10.91 -130.61 -1.43 -12.90 16 17 C -0.14 -5.87 4.69 30.67 0.14 -5.73 16 18 C 0.20 9.83 5.05 86.36 0.44 10.27 16 19 N -0.60 -28.86 2.98 -699.10 -2.08 -30.94 16 20 C -0.26 -13.93 9.55 84.03 0.80 -13.12 16 21 H 0.07 3.56 7.90 -2.91 -0.02 3.53 16 22 C -0.05 -2.60 4.85 84.86 0.41 -2.19 16 23 N -0.93 -55.49 11.43 21.65 0.25 -55.24 16 24 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 25 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.14 5.05 6.24 86.36 0.54 5.58 16 29 C -0.13 -3.57 4.70 30.67 0.14 -3.42 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.71 16 33 H 0.07 1.40 6.69 -2.39 -0.02 1.39 16 34 H 0.05 1.16 7.28 -2.39 -0.02 1.14 16 35 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 36 H 0.06 2.22 6.29 -2.39 -0.02 2.20 16 37 H 0.41 9.67 7.22 -92.71 -0.67 9.01 16 38 H 0.11 2.02 7.74 -2.39 -0.02 2.00 16 39 H 0.05 1.54 7.86 -2.39 -0.02 1.52 16 40 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.09 1.27 7.87 -2.39 -0.02 1.25 16 45 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.05 2.48 6.17 -2.38 -0.01 2.47 16 47 H 0.00 -0.11 7.74 -2.39 -0.02 -0.13 16 48 H 0.03 1.90 6.23 -2.39 -0.01 1.88 16 49 H 0.25 14.40 8.31 -92.70 -0.77 13.63 16 50 H 0.03 0.92 6.90 -2.39 -0.02 0.91 16 51 H 0.06 2.17 7.93 -2.38 -0.02 2.15 16 52 H 0.10 2.05 6.53 -2.39 -0.02 2.04 16 53 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.50 401.71 2.49 -73.01 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.22 Total: 25.07 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.25 Total: 12.11 kcal Atomic # 7 Polarization: -104.61 SS G_CDS: -3.18 Total: -107.79 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -2.82 Total: -49.47 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -75.50 2.49 -73.01 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151216336.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.674 kcal (2) G-P(sol) polarization free energy of solvation -75.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds