Wall clock time and date at job start Tue Mar 31 2020 23:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 114.00090 * 2 1 4 4 C 1.52996 * 109.47166 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47471 * 184.39482 * 4 3 2 6 6 N 1.46505 * 109.45808 * 303.08209 * 5 4 3 7 7 C 1.34776 * 119.99843 * 303.01610 * 6 5 4 8 8 O 1.21275 * 119.99816 * 355.03164 * 7 6 5 9 9 C 1.50700 * 119.99726 * 175.03209 * 7 6 5 10 10 H 1.09003 * 110.67182 * 306.50860 * 9 7 6 11 11 C 1.54991 * 110.62040 * 69.47081 * 9 7 6 12 12 C 1.54812 * 102.09283 * 155.52239 * 11 9 7 13 13 H 1.08995 * 110.59669 * 97.85406 * 12 11 9 14 14 C 1.52997 * 110.49052 * 220.44428 * 12 11 9 15 15 C 1.54105 * 104.18784 * 339.12209 * 12 11 9 16 16 O 1.43749 * 107.29312 * 357.97052 * 15 12 11 17 17 C 1.53041 * 109.44536 * 63.04253 * 5 4 3 18 18 C 1.53185 * 109.31232 * 181.37984 * 17 5 4 19 19 N 1.46926 * 108.77901 * 305.36745 * 18 17 5 20 20 C 1.36938 * 120.63282 * 233.58782 * 19 18 17 21 21 H 1.07998 * 119.99959 * 31.79521 * 20 19 18 22 22 C 1.38815 * 119.99967 * 211.79108 * 20 19 18 23 23 N 1.31617 * 119.99660 * 10.84068 * 22 20 19 24 24 Si 1.86795 * 119.99942 * 190.83559 * 22 20 19 25 25 H 1.48502 * 109.47309 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.46745 * 120.00284 * 24 22 20 27 27 H 1.48498 * 109.47488 * 239.99947 * 24 22 20 28 28 C 1.46927 * 118.73489 * 53.60452 * 19 18 17 29 29 C 1.53035 * 109.46250 * 183.10655 * 5 4 3 30 30 H 1.09003 * 109.46738 * 59.99642 * 1 2 3 31 31 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46967 * 300.00300 * 1 2 3 33 33 H 1.09003 * 109.47009 * 59.99675 * 3 2 1 34 34 H 1.09000 * 109.47116 * 299.99803 * 3 2 1 35 35 H 1.09005 * 109.47251 * 64.39706 * 4 3 2 36 36 H 1.08998 * 109.47444 * 304.39724 * 4 3 2 37 37 H 0.97004 * 119.99767 * 123.01759 * 6 5 4 38 38 H 1.09009 * 110.90390 * 37.33074 * 11 9 7 39 39 H 1.08997 * 110.90905 * 273.72342 * 11 9 7 40 40 H 1.08997 * 109.47050 * 176.21597 * 14 12 11 41 41 H 1.09005 * 109.46771 * 56.22398 * 14 12 11 42 42 H 1.08994 * 109.47543 * 296.22471 * 14 12 11 43 43 H 1.09002 * 109.87678 * 117.38886 * 15 12 11 44 44 H 1.08994 * 109.87802 * 238.54343 * 15 12 11 45 45 H 1.09004 * 109.50200 * 301.33588 * 17 5 4 46 46 H 1.09008 * 109.49601 * 61.42989 * 17 5 4 47 47 H 1.09003 * 109.59035 * 185.57954 * 18 17 5 48 48 H 1.09004 * 109.58754 * 65.15828 * 18 17 5 49 49 H 0.97005 * 119.99814 * 179.97438 * 23 22 20 50 50 H 1.09007 * 109.58415 * 186.60378 * 28 19 18 51 51 H 1.09004 * 109.70156 * 66.25639 * 28 19 18 52 52 H 1.09004 * 109.49861 * 298.58037 * 29 5 4 53 53 H 1.09002 * 109.49762 * 58.64582 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1575 2.5781 0.1112 6 7 3.6745 3.4168 -0.9887 7 6 3.8567 3.0248 -2.2652 8 8 4.4986 2.0245 -2.5066 9 6 3.2629 3.8295 -3.3926 10 1 2.1939 3.9767 -3.2387 11 6 3.9873 5.1927 -3.5308 12 6 3.7256 5.5501 -5.0142 13 1 2.8826 6.2356 -5.1004 14 6 4.9776 6.1607 -5.6469 15 6 3.3916 4.1986 -5.6751 16 8 3.5101 3.1863 -4.6614 17 6 3.7586 3.2096 1.4470 18 6 4.3544 4.6178 1.5396 19 7 5.8049 4.5330 1.3214 20 6 6.6795 5.0679 2.2293 21 1 6.4243 5.0870 3.2785 22 6 7.8942 5.5856 1.8009 23 7 8.1189 5.7595 0.5158 24 14 9.2097 6.0356 3.0485 25 1 8.7131 5.7461 4.4177 26 1 10.4338 5.2365 2.7870 27 1 9.5282 7.4814 2.9324 28 6 6.2992 3.8636 0.1105 29 6 5.6816 2.4638 0.0339 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8630 0.7130 -0.9259 36 1 3.8515 0.5774 0.8488 37 1 3.2236 4.2543 -0.7981 38 1 5.0551 5.0869 -3.3388 39 1 3.5460 5.9367 -2.8677 40 1 4.7970 6.3437 -6.7061 41 1 5.8144 5.4713 -5.5348 42 1 5.2134 7.1020 -5.1506 43 1 2.3730 4.2173 -6.0628 44 1 4.0945 3.9977 -6.4835 45 1 2.6721 3.2693 1.5112 46 1 4.1390 2.5991 2.2660 47 1 4.1573 5.0338 2.5276 48 1 3.9068 5.2549 0.7767 49 1 8.9676 6.1216 0.2165 50 1 7.3852 3.7819 0.1556 51 1 6.0123 4.4383 -0.7702 52 1 6.0439 1.8603 0.8662 53 1 5.9638 1.9921 -0.9074 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151216337.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:28 Heat of formation + Delta-G solvation = -129.589118 kcal Electronic energy + Delta-G solvation = -32669.902069 eV Core-core repulsion = 28541.320405 eV Total energy + Delta-G solvation = -4128.581664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.85627 -40.44194 -38.77343 -38.50623 -36.20184 -34.53092 -33.76587 -33.14793 -31.79972 -30.92244 -30.27505 -27.64815 -27.24930 -26.41658 -25.04253 -24.61710 -23.64133 -22.19781 -21.65692 -21.27264 -20.15599 -18.86034 -18.48603 -17.71942 -17.39583 -16.97148 -16.81683 -16.47494 -16.22773 -15.95139 -15.86176 -15.63333 -15.29515 -15.16607 -14.94266 -14.68010 -14.50859 -14.30290 -13.88533 -13.82744 -13.63476 -13.51164 -13.18069 -13.02153 -12.79108 -12.77786 -12.66847 -12.62706 -12.24662 -12.20425 -12.09214 -12.06611 -11.94147 -11.90112 -11.79339 -11.68742 -11.29920 -11.26491 -10.74421 -10.57909 -10.54010 -10.30694 -9.96837 -8.58062 -7.84102 -5.34846 1.45195 1.48129 1.57202 1.63489 1.95726 2.51433 2.82031 3.06321 3.32367 3.41342 3.63527 3.72324 3.81763 3.84804 3.95415 4.06771 4.09833 4.12082 4.18706 4.23068 4.37294 4.45012 4.54440 4.55393 4.55745 4.59567 4.67477 4.70142 4.73041 4.75238 4.82957 4.84944 4.89504 4.94200 4.99855 5.04648 5.06741 5.13709 5.13924 5.18627 5.27369 5.34228 5.37355 5.51513 5.64301 5.67811 5.77287 5.84209 6.27291 6.43470 6.65265 7.18370 7.33150 7.89152 8.41630 9.20881 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008051 B = 0.004686 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3476.850165 B = 5973.745561 C = 8790.190832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.075 3.925 4 C -0.122 4.122 5 C 0.204 3.796 6 N -0.700 5.700 7 C 0.515 3.485 8 O -0.561 6.561 9 C 0.063 3.937 10 H 0.127 0.873 11 C -0.139 4.139 12 C -0.116 4.116 13 H 0.117 0.883 14 C -0.145 4.145 15 C 0.042 3.958 16 O -0.385 6.385 17 C -0.127 4.127 18 C 0.142 3.858 19 N -0.606 5.606 20 C -0.258 4.258 21 H 0.068 0.932 22 C -0.048 4.048 23 N -0.934 5.934 24 Si 0.962 3.038 25 H -0.264 1.264 26 H -0.297 1.297 27 H -0.291 1.291 28 C 0.199 3.801 29 C -0.140 4.140 30 H 0.046 0.954 31 H 0.095 0.905 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.060 0.940 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.029 0.971 49 H 0.246 0.754 50 H 0.038 0.962 51 H -0.002 1.002 52 H 0.053 0.947 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.782 -0.975 -7.211 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C -0.002 4.002 4 C -0.161 4.161 5 C 0.118 3.882 6 N -0.353 5.353 7 C 0.302 3.698 8 O -0.439 6.439 9 C 0.002 3.998 10 H 0.145 0.855 11 C -0.177 4.177 12 C -0.134 4.134 13 H 0.135 0.865 14 C -0.202 4.202 15 C -0.034 4.034 16 O -0.304 6.304 17 C -0.166 4.166 18 C 0.017 3.983 19 N -0.329 5.329 20 C -0.389 4.389 21 H 0.086 0.914 22 C -0.243 4.243 23 N -0.580 5.580 24 Si 0.791 3.209 25 H -0.188 1.188 26 H -0.225 1.225 27 H -0.218 1.218 28 C 0.073 3.927 29 C -0.180 4.180 30 H 0.065 0.935 31 H 0.113 0.887 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.247 0.753 38 H 0.069 0.931 39 H 0.127 0.873 40 H 0.097 0.903 41 H 0.056 0.944 42 H 0.079 0.921 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.119 0.881 46 H 0.091 0.909 47 H 0.081 0.919 48 H 0.047 0.953 49 H 0.055 0.945 50 H 0.056 0.944 51 H 0.016 0.984 52 H 0.071 0.929 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.053 -2.012 -7.470 19.640 hybrid contribution 1.233 0.899 0.419 1.582 sum -16.820 -1.113 -7.051 18.272 Atomic orbital electron populations 1.22923 0.79450 1.03738 1.00909 1.87845 1.21630 1.29006 1.95595 1.22475 0.92604 0.84254 1.00822 1.21804 0.94575 0.96626 1.03091 1.19989 0.92327 0.89182 0.86658 1.45877 1.59959 1.25154 1.04346 1.20639 0.79823 0.85078 0.84284 1.90645 1.40564 1.28289 1.84449 1.23115 1.01062 0.91451 0.84137 0.85528 1.23196 1.00569 0.95244 0.98684 1.22550 1.00532 0.97498 0.92839 0.86498 1.21835 0.96171 1.00576 1.01636 1.23571 1.02591 0.86360 0.90898 1.88974 1.92750 1.33574 1.15076 1.22303 1.01603 0.97995 0.94658 1.21087 0.83591 0.94254 0.99416 1.44207 1.01161 1.64519 1.23031 1.19533 0.98568 1.31516 0.89271 0.91413 1.25857 1.01971 0.99241 0.97249 1.70156 1.23956 1.49331 1.14536 0.85280 0.79170 0.76949 0.79497 1.18809 1.22463 1.21825 1.20250 0.96816 0.88411 0.87252 1.22393 0.95875 0.99275 1.00474 0.93536 0.88693 0.92595 0.91024 0.93540 0.92186 0.90724 0.75266 0.93137 0.87270 0.90285 0.94436 0.92065 0.89632 0.89584 0.88139 0.90870 0.91946 0.95330 0.94466 0.94380 0.98373 0.92860 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 11.01 113.37 1.25 1.70 16 2 O -0.42 -11.24 10.70 -148.98 -1.59 -12.83 16 3 C 0.07 1.85 5.50 71.98 0.40 2.25 16 4 C -0.12 -3.80 4.32 30.59 0.13 -3.66 16 5 C 0.20 6.56 0.35 3.63 0.00 6.57 16 6 N -0.70 -20.20 3.36 -422.80 -1.42 -21.62 16 7 C 0.52 16.96 6.37 87.66 0.56 17.51 16 8 O -0.56 -23.86 12.85 15.19 0.20 -23.67 16 9 C 0.06 1.60 3.77 30.53 0.11 1.72 16 10 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 11 C -0.14 -3.26 6.13 31.89 0.20 -3.07 16 12 C -0.12 -2.07 3.65 -9.80 -0.04 -2.10 16 13 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 14 C -0.14 -2.73 8.92 71.98 0.64 -2.09 16 15 C 0.04 0.84 7.37 72.36 0.53 1.37 16 16 O -0.38 -11.48 10.80 -130.77 -1.41 -12.89 16 17 C -0.13 -3.62 4.72 30.67 0.14 -3.47 16 18 C 0.14 5.05 6.24 86.36 0.54 5.59 16 19 N -0.61 -28.86 2.98 -699.09 -2.09 -30.95 16 20 C -0.26 -13.78 9.58 84.03 0.80 -12.97 16 21 H 0.07 3.49 7.85 -2.91 -0.02 3.47 16 22 C -0.05 -2.64 5.04 84.86 0.43 -2.21 16 23 N -0.93 -55.27 11.09 21.65 0.24 -55.03 16 24 Si 0.96 44.79 29.57 68.60 2.03 46.82 16 25 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 28 C 0.20 9.80 4.99 86.36 0.43 10.23 16 29 C -0.14 -5.88 4.71 30.67 0.14 -5.73 16 30 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.45 6.27 -2.39 -0.01 1.44 16 34 H 0.05 1.12 7.46 -2.39 -0.02 1.10 16 35 H 0.06 2.26 6.22 -2.38 -0.01 2.24 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.41 9.63 7.18 -92.71 -0.67 8.96 16 38 H 0.05 1.60 7.77 -2.38 -0.02 1.58 16 39 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.04 0.88 8.13 -2.38 -0.02 0.86 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.09 1.69 7.69 -2.39 -0.02 1.67 16 45 H 0.10 2.08 6.35 -2.38 -0.02 2.07 16 46 H 0.07 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.06 2.16 7.93 -2.39 -0.02 2.14 16 48 H 0.03 0.95 6.88 -2.38 -0.02 0.94 16 49 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 50 H 0.04 2.21 6.14 -2.38 -0.01 2.20 16 51 H 0.00 -0.09 7.74 -2.38 -0.02 -0.11 16 52 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 53 H 0.05 2.39 6.26 -2.39 -0.01 2.38 16 Total: -1.00 -74.97 401.22 2.45 -72.51 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.23 Total: 26.04 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.28 Total: 11.61 kcal Atomic # 7 Polarization: -104.33 SS G_CDS: -3.26 Total: -107.59 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -2.81 Total: -49.39 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.97 2.45 -72.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151216337.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.078 kcal (2) G-P(sol) polarization free energy of solvation -74.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds