Wall clock time and date at job start Wed Apr 1 2020 00:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42896 * 114.00383 * 2 1 4 4 C 1.52993 * 109.47595 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47509 * 181.02435 * 4 3 2 6 6 N 1.46497 * 109.46009 * 54.41556 * 5 4 3 7 7 C 1.34773 * 120.00175 * 56.58451 * 6 5 4 8 8 O 1.21283 * 120.00020 * 4.92588 * 7 6 5 9 9 C 1.50695 * 120.00396 * 184.92442 * 7 6 5 10 10 H 1.09002 * 110.45992 * 10.58591 * 9 7 6 11 11 C 1.54508 * 110.51372 * 133.34295 * 9 7 6 12 12 C 1.54481 * 104.06378 * 118.64508 * 11 9 7 13 13 O 1.44430 * 104.80407 * 336.02372 * 12 11 9 14 14 C 1.44431 * 105.27266 * 40.50858 * 13 12 11 15 15 H 1.08999 * 110.37047 * 78.32852 * 14 13 12 16 16 C 1.53000 * 110.36857 * 200.65676 * 14 13 12 17 17 C 1.53047 * 109.46278 * 174.39092 * 5 4 3 18 18 C 1.53161 * 109.32612 * 181.38816 * 17 5 4 19 19 N 1.46925 * 108.76874 * 305.35294 * 18 17 5 20 20 C 1.36943 * 120.63070 * 233.63575 * 19 18 17 21 21 H 1.07997 * 120.00451 * 151.24394 * 20 19 18 22 22 C 1.38815 * 119.99885 * 331.24663 * 20 19 18 23 23 N 1.31622 * 119.99675 * 342.12637 * 22 20 19 24 24 Si 1.86798 * 120.00251 * 162.12787 * 22 20 19 25 25 H 1.48500 * 109.46900 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47192 * 119.99567 * 24 22 20 27 27 H 1.48499 * 109.47301 * 239.99952 * 24 22 20 28 28 C 1.46921 * 118.74266 * 53.60991 * 19 18 17 29 29 C 1.53042 * 109.46308 * 294.44400 * 5 4 3 30 30 H 1.08997 * 109.46782 * 300.00256 * 1 2 3 31 31 H 1.09008 * 109.46613 * 60.00075 * 1 2 3 32 32 H 1.08996 * 109.47293 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47476 * 59.99614 * 3 2 1 34 34 H 1.09000 * 109.47017 * 300.00072 * 3 2 1 35 35 H 1.09006 * 109.47220 * 61.02451 * 4 3 2 36 36 H 1.08997 * 109.47500 * 301.02694 * 4 3 2 37 37 H 0.97006 * 120.00325 * 236.85922 * 6 5 4 38 38 H 1.09000 * 110.51202 * 237.28845 * 11 9 7 39 39 H 1.08993 * 110.51092 * 359.97438 * 11 9 7 40 40 H 1.08993 * 110.37444 * 217.19379 * 12 11 9 41 41 H 1.09003 * 110.46661 * 94.89649 * 12 11 9 42 42 H 1.08998 * 109.47031 * 170.09006 * 16 14 13 43 43 H 1.09005 * 109.47367 * 290.09011 * 16 14 13 44 44 H 1.09001 * 109.47000 * 50.09260 * 16 14 13 45 45 H 1.08999 * 109.49061 * 301.32121 * 17 5 4 46 46 H 1.08991 * 109.49956 * 61.41851 * 17 5 4 47 47 H 1.09002 * 109.58755 * 185.56866 * 18 17 5 48 48 H 1.09005 * 109.71213 * 65.20659 * 18 17 5 49 49 H 0.97007 * 119.99312 * 180.02562 * 23 22 20 50 50 H 1.09000 * 109.58986 * 186.60526 * 28 19 18 51 51 H 1.08999 * 109.58624 * 66.17763 * 28 19 18 52 52 H 1.09004 * 109.49818 * 298.58034 * 29 5 4 53 53 H 1.09005 * 109.49820 * 58.66924 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5820 0.0264 6 7 3.6200 3.3349 1.1623 7 6 3.7347 2.8431 2.4118 8 8 4.3604 1.8226 2.6067 9 6 3.0856 3.5610 3.5668 10 1 2.4168 4.3412 3.2031 11 6 2.3203 2.5626 4.4638 12 6 3.0209 2.6772 5.8358 13 8 4.3457 3.1669 5.5338 14 6 4.1581 4.1609 4.5029 15 1 3.8031 5.0955 4.9371 16 6 5.4641 4.3892 3.7393 17 6 5.6769 2.4612 0.1681 18 6 6.2934 3.8620 0.2285 19 7 5.8561 4.6220 -0.9504 20 6 6.7720 5.2231 -1.7721 21 1 6.5468 5.3661 -2.8186 22 6 7.9900 5.6487 -1.2599 23 7 8.1394 5.8050 0.0384 24 14 9.4170 5.9996 -2.4132 25 1 8.9939 5.7494 -3.8145 26 1 9.8335 7.4177 -2.2681 27 1 10.5577 5.1115 -2.0738 28 6 4.4177 4.7245 -1.2314 29 6 3.8221 3.3138 -1.2751 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8588 0.6594 -0.8982 36 1 3.8556 0.6281 0.8815 37 1 3.1778 4.1856 1.0146 38 1 1.2716 2.8486 4.5454 39 1 2.4110 1.5497 4.0716 40 1 3.0778 1.7002 6.3156 41 1 2.4922 3.3834 6.4759 42 1 5.2684 5.0033 2.8603 43 1 6.1790 4.8980 4.3861 44 1 5.8753 3.4291 3.4276 45 1 5.9148 1.9196 1.0836 46 1 6.0806 1.9226 -0.6891 47 1 7.3805 3.7830 0.2298 48 1 5.9628 4.3704 1.1342 49 1 8.9904 6.1028 0.3963 50 1 4.2672 5.2147 -2.1933 51 1 3.9320 5.3019 -0.4448 52 1 4.2433 2.7671 -2.1189 53 1 2.7398 3.3791 -1.3871 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151374190.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:40 Heat of formation + Delta-G solvation = -127.141773 kcal Electronic energy + Delta-G solvation = -33324.737091 eV Core-core repulsion = 29196.261551 eV Total energy + Delta-G solvation = -4128.475540 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.00115 -40.36494 -38.69435 -38.43441 -36.16545 -33.96008 -33.42033 -32.53643 -32.39096 -31.72819 -30.39675 -27.67902 -27.30857 -26.38773 -24.63813 -24.02061 -23.41733 -23.00929 -21.95678 -20.90013 -20.12160 -18.77656 -18.33745 -17.52845 -17.19058 -16.98641 -16.77790 -16.47518 -16.45285 -16.10749 -15.87022 -15.63897 -15.36632 -15.21083 -14.88535 -14.70143 -14.25854 -14.20526 -13.86668 -13.68947 -13.36694 -13.22879 -13.16765 -13.03185 -12.86435 -12.71837 -12.66729 -12.60483 -12.29627 -12.25133 -12.16855 -12.05555 -11.96210 -11.92670 -11.81480 -11.75227 -11.25959 -11.22718 -10.73704 -10.56735 -10.49680 -10.28205 -9.87859 -8.60688 -7.84548 -5.28374 1.44265 1.48092 1.56576 1.73847 2.27460 2.52258 2.83128 2.94921 3.30983 3.51213 3.64199 3.74022 3.76362 3.93561 4.01689 4.13723 4.15062 4.19568 4.25104 4.36451 4.39800 4.41571 4.47342 4.51310 4.54930 4.55711 4.59371 4.63742 4.71386 4.77688 4.84955 4.86424 4.91303 4.93085 4.98495 5.02154 5.07612 5.11812 5.14865 5.20353 5.23840 5.31193 5.40257 5.53014 5.68292 5.72187 5.83655 5.94323 6.28103 6.41993 6.74378 7.18634 7.44895 7.91379 8.42249 9.20683 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010256 B = 0.004540 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.376794 B = 6165.931789 C = 8325.191843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.076 3.924 4 C -0.121 4.121 5 C 0.204 3.796 6 N -0.707 5.707 7 C 0.527 3.473 8 O -0.564 6.564 9 C -0.141 4.141 10 H 0.134 0.866 11 C -0.130 4.130 12 C 0.042 3.958 13 O -0.397 6.397 14 C 0.093 3.907 15 H 0.105 0.895 16 C -0.150 4.150 17 C -0.138 4.138 18 C 0.191 3.809 19 N -0.606 5.606 20 C -0.259 4.259 21 H 0.066 0.934 22 C -0.046 4.046 23 N -0.927 5.927 24 Si 0.956 3.044 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.298 1.298 28 C 0.142 3.858 29 C -0.127 4.127 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.408 0.592 38 H 0.117 0.883 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.041 0.959 45 H 0.054 0.946 46 H 0.047 0.953 47 H 0.032 0.968 48 H 0.018 0.982 49 H 0.246 0.754 50 H 0.059 0.941 51 H 0.029 0.971 52 H 0.069 0.931 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.524 -4.594 5.827 21.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.000 4.000 4 C -0.159 4.159 5 C 0.118 3.882 6 N -0.359 5.359 7 C 0.314 3.686 8 O -0.443 6.443 9 C -0.163 4.163 10 H 0.152 0.848 11 C -0.168 4.168 12 C -0.034 4.034 13 O -0.317 6.317 14 C 0.035 3.965 15 H 0.123 0.877 16 C -0.207 4.207 17 C -0.178 4.178 18 C 0.065 3.935 19 N -0.329 5.329 20 C -0.390 4.390 21 H 0.084 0.916 22 C -0.242 4.242 23 N -0.573 5.573 24 Si 0.785 3.215 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.225 1.225 28 C 0.017 3.983 29 C -0.166 4.166 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.245 0.755 38 H 0.135 0.865 39 H 0.081 0.919 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.050 0.950 48 H 0.036 0.964 49 H 0.055 0.945 50 H 0.077 0.923 51 H 0.047 0.953 52 H 0.088 0.912 53 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.653 -5.493 6.099 21.298 hybrid contribution 1.202 0.764 -0.623 1.555 sum -18.451 -4.730 5.475 19.819 Atomic orbital electron populations 1.22914 0.79487 1.03676 1.00903 1.87847 1.21583 1.29045 1.95593 1.22445 0.92624 0.84178 1.00772 1.21783 0.94540 0.96701 1.02907 1.19923 0.91770 0.90257 0.86236 1.46119 1.59510 1.24630 1.05662 1.20564 0.79508 0.84554 0.83980 1.90650 1.42038 1.26901 1.84677 1.22907 0.98718 1.00068 0.94609 0.84833 1.22888 1.00918 0.98868 0.94171 1.23589 0.82607 1.00673 0.96551 1.89175 1.28917 1.56939 1.56688 1.22933 0.94156 0.92420 0.86969 0.87699 1.21890 0.97324 1.01557 0.99928 1.22357 0.95914 0.99163 1.00390 1.20405 0.96821 0.87931 0.88337 1.44242 1.01255 1.58456 1.28977 1.19492 0.96800 1.31798 0.90873 0.91602 1.25687 1.01922 0.99816 0.96781 1.70185 1.24108 1.50763 1.12277 0.85382 0.79972 0.76718 0.79430 1.19020 1.21914 1.22506 1.21061 0.83896 0.94373 0.98973 1.22279 1.01638 0.97339 0.95322 0.93302 0.92857 0.88770 0.93132 0.91584 0.91179 0.91906 0.75545 0.86460 0.91881 0.88975 0.89474 0.91202 0.92229 0.94011 0.92786 0.93439 0.94970 0.96412 0.94500 0.92267 0.95324 0.91245 0.88405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.42 -10.75 10.70 -148.98 -1.59 -12.34 16 3 C 0.08 1.80 5.47 71.98 0.39 2.19 16 4 C -0.12 -3.60 4.26 30.59 0.13 -3.47 16 5 C 0.20 6.35 0.35 3.63 0.00 6.35 16 6 N -0.71 -19.26 3.24 -422.81 -1.37 -20.63 16 7 C 0.53 15.50 3.82 87.66 0.34 15.83 16 8 O -0.56 -21.52 11.82 -3.04 -0.04 -21.55 16 9 C -0.14 -3.08 3.44 -10.53 -0.04 -3.12 16 10 H 0.13 1.88 8.02 -2.39 -0.02 1.87 16 11 C -0.13 -2.41 6.60 31.61 0.21 -2.20 16 12 C 0.04 0.83 7.63 72.49 0.55 1.38 16 13 O -0.40 -11.66 11.34 -148.98 -1.69 -13.35 16 14 C 0.09 2.40 3.83 31.10 0.12 2.52 16 15 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.15 -5.05 8.10 71.98 0.58 -4.46 16 17 C -0.14 -5.66 4.72 30.66 0.14 -5.52 16 18 C 0.19 9.18 5.04 86.35 0.44 9.61 16 19 N -0.61 -28.68 2.99 -699.16 -2.09 -30.77 16 20 C -0.26 -13.86 9.57 84.03 0.80 -13.05 16 21 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 22 C -0.05 -2.56 4.88 84.86 0.41 -2.14 16 23 N -0.93 -54.63 11.30 21.65 0.24 -54.39 16 24 Si 0.96 45.09 29.59 68.60 2.03 47.11 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 27 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 28 C 0.14 5.07 6.24 86.36 0.54 5.61 16 29 C -0.13 -3.61 4.76 30.67 0.15 -3.46 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.05 1.13 7.04 -2.38 -0.02 1.11 16 34 H 0.07 1.31 6.60 -2.39 -0.02 1.29 16 35 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 36 H 0.06 2.26 6.28 -2.39 -0.01 2.24 16 37 H 0.41 9.22 7.09 -92.70 -0.66 8.57 16 38 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.06 1.49 7.35 -2.39 -0.02 1.47 16 40 H 0.09 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 2.45 6.64 -2.39 -0.02 2.44 16 43 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.04 1.69 6.68 -2.39 -0.02 1.68 16 45 H 0.05 2.40 6.29 -2.39 -0.02 2.39 16 46 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 47 H 0.03 1.84 6.14 -2.39 -0.01 1.82 16 48 H 0.02 0.88 5.79 -2.38 -0.01 0.87 16 49 H 0.25 14.22 8.31 -92.70 -0.77 13.45 16 50 H 0.06 2.07 7.93 -2.39 -0.02 2.06 16 51 H 0.03 0.95 6.88 -2.39 -0.02 0.94 16 52 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.10 2.04 6.55 -2.38 -0.02 2.02 16 Total: -1.00 -73.17 393.09 1.76 -71.41 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: 0.25 Total: 26.77 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 6.02 Total: 7.74 kcal Atomic # 7 Polarization: -102.58 SS G_CDS: -3.21 Total: -105.79 kcal Atomic # 8 Polarization: -43.93 SS G_CDS: -3.32 Total: -47.25 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -73.17 1.76 -71.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151374190.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.732 kcal (2) G-P(sol) polarization free energy of solvation -73.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds