Wall clock time and date at job start Wed Apr 1 2020 00:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99957 * 2 1 4 4 C 1.53008 * 109.46808 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46606 * 180.96525 * 4 3 2 6 6 N 1.46492 * 109.45361 * 304.50145 * 5 4 3 7 7 C 1.34783 * 119.99917 * 297.73386 * 6 5 4 8 8 O 1.21284 * 120.00028 * 4.94800 * 7 6 5 9 9 C 1.50702 * 120.00063 * 184.95613 * 7 6 5 10 10 H 1.08996 * 110.80402 * 62.16585 * 9 7 6 11 11 C 1.54810 * 110.90350 * 298.53943 * 9 7 6 12 12 C 1.54100 * 104.18816 * 220.92250 * 11 9 7 13 13 O 1.43742 * 107.29026 * 357.97258 * 12 11 9 14 14 C 1.44374 * 106.97746 * 26.51262 * 13 12 11 15 15 H 1.09003 * 110.61630 * 78.44215 * 14 13 12 16 16 C 1.53000 * 110.61923 * 201.43586 * 14 13 12 17 17 C 1.53044 * 109.46029 * 64.47081 * 5 4 3 18 18 C 1.53189 * 109.31102 * 181.38330 * 17 5 4 19 19 N 1.46919 * 108.77537 * 305.35981 * 18 17 5 20 20 C 1.36938 * 120.63120 * 233.63183 * 19 18 17 21 21 H 1.08005 * 120.00243 * 152.88207 * 20 19 18 22 22 C 1.38812 * 120.00294 * 332.88313 * 20 19 18 23 23 N 1.31613 * 120.00187 * 159.48323 * 22 20 19 24 24 Si 1.86802 * 119.99615 * 339.48036 * 22 20 19 25 25 H 1.48507 * 109.46853 * 92.84515 * 24 22 20 26 26 H 1.48506 * 109.47182 * 212.83939 * 24 22 20 27 27 H 1.48499 * 109.47603 * 332.84437 * 24 22 20 28 28 C 1.46923 * 118.73952 * 53.61478 * 19 18 17 29 29 C 1.53043 * 109.45850 * 184.53158 * 5 4 3 30 30 H 1.09004 * 109.47400 * 300.00361 * 1 2 3 31 31 H 1.09004 * 109.47099 * 59.99838 * 1 2 3 32 32 H 1.08997 * 109.47351 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46910 * 59.99958 * 3 2 1 34 34 H 1.08999 * 109.46837 * 299.99514 * 3 2 1 35 35 H 1.08999 * 109.46917 * 60.96381 * 4 3 2 36 36 H 1.08995 * 109.46864 * 300.96774 * 4 3 2 37 37 H 0.97001 * 120.00675 * 117.72978 * 6 5 4 38 38 H 1.09002 * 110.49432 * 339.60013 * 11 9 7 39 39 H 1.09006 * 110.49080 * 102.24652 * 11 9 7 40 40 H 1.08999 * 109.87840 * 117.39754 * 12 11 9 41 41 H 1.08999 * 109.87827 * 238.55012 * 12 11 9 42 42 H 1.08994 * 109.47422 * 174.07083 * 16 14 13 43 43 H 1.09004 * 109.47206 * 294.07734 * 16 14 13 44 44 H 1.09004 * 109.46869 * 54.06819 * 16 14 13 45 45 H 1.08997 * 109.49939 * 61.42643 * 17 5 4 46 46 H 1.09010 * 109.52111 * 301.34808 * 17 5 4 47 47 H 1.09005 * 109.59151 * 65.15217 * 18 17 5 48 48 H 1.09006 * 109.58450 * 185.57178 * 18 17 5 49 49 H 0.97011 * 120.00040 * 180.02562 * 23 22 20 50 50 H 1.09001 * 109.58933 * 186.60535 * 28 19 18 51 51 H 1.08995 * 109.70930 * 66.24273 * 28 19 18 52 52 H 1.08998 * 109.50086 * 298.57254 * 29 5 4 53 53 H 1.09001 * 109.48975 * 58.66498 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1577 2.5822 0.0249 6 7 3.6433 3.3649 -1.1014 7 6 3.8839 2.9647 -2.3658 8 8 4.4480 1.9109 -2.5714 9 6 3.4522 3.8268 -3.5241 10 1 3.9603 4.7908 -3.4996 11 6 1.9153 4.0124 -3.5318 12 6 1.5287 3.8994 -5.0192 13 8 2.7449 3.7210 -5.7644 14 6 3.6988 3.1047 -4.8731 15 1 3.5015 2.0368 -4.7786 16 6 5.1281 3.3487 -5.3614 17 6 3.7947 3.2792 1.3382 18 6 4.3903 4.6905 1.3442 19 7 5.8343 4.5954 1.0907 20 6 6.7326 5.1745 1.9469 21 1 7.7305 4.7713 2.0364 22 6 6.3606 6.2798 2.6998 23 7 7.0341 6.5929 3.7863 24 14 4.9040 7.3229 2.1707 25 1 3.6747 6.8353 2.8463 26 1 5.1467 8.7390 2.5465 27 1 4.7325 7.2236 0.6990 28 6 6.2964 3.8669 -0.0986 29 6 5.6794 2.4648 -0.0884 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.8586 0.6585 -0.8976 36 1 3.8555 0.6290 0.8820 37 1 3.1295 4.1711 -0.9375 38 1 1.4330 3.2258 -2.9515 39 1 1.6476 4.9944 -3.1415 40 1 0.8737 3.0410 -5.1677 41 1 1.0267 4.8115 -5.3420 42 1 5.8342 2.9684 -4.6233 43 1 5.2811 2.8334 -6.3097 44 1 5.2874 4.4182 -5.4993 45 1 4.1984 2.7103 2.1757 46 1 2.7102 3.3415 1.4298 47 1 3.9208 5.2887 0.5632 48 1 4.2195 5.1551 2.3154 49 1 6.7739 7.3651 4.3127 50 1 7.3834 3.7879 -0.0793 51 1 5.9844 4.3968 -0.9985 52 1 6.0655 1.9036 0.7625 53 1 5.9364 1.9474 -1.0128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151374192.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:48 Heat of formation + Delta-G solvation = -126.486844 kcal Electronic energy + Delta-G solvation = -32978.381459 eV Core-core repulsion = 28849.934319 eV Total energy + Delta-G solvation = -4128.447140 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.00888 -40.47094 -38.82750 -38.65573 -36.32543 -34.15051 -33.69163 -32.74934 -32.23121 -32.02398 -30.75829 -27.82770 -27.37946 -26.33174 -24.61549 -24.31440 -23.62016 -22.78762 -22.09177 -21.31560 -20.20492 -18.99220 -18.55617 -17.65379 -17.28771 -17.05917 -16.84243 -16.69137 -16.33177 -16.10775 -15.84274 -15.66593 -15.56709 -15.29414 -15.00966 -14.84582 -14.55901 -14.27962 -14.21859 -14.01783 -13.58642 -13.42461 -13.35705 -13.29068 -13.09654 -12.88503 -12.70475 -12.47662 -12.33264 -12.29535 -12.22720 -12.10874 -12.01325 -11.99313 -11.70314 -11.61642 -11.43974 -11.29719 -10.79582 -10.67418 -10.60315 -10.37171 -10.00419 -8.91593 -8.13995 -5.46641 1.30435 1.44191 1.53304 1.63478 2.12784 2.43699 2.79132 2.82369 3.07696 3.34783 3.46820 3.59789 3.64167 3.78407 3.87582 4.03845 4.07552 4.13996 4.18606 4.26026 4.30109 4.31436 4.40159 4.44509 4.47832 4.51801 4.54557 4.60737 4.62537 4.67166 4.70892 4.82550 4.84389 4.89432 4.92821 4.94569 4.98412 5.02971 5.03784 5.07728 5.10382 5.18202 5.23305 5.25829 5.33971 5.63683 5.87851 5.90363 6.14153 6.24624 6.59966 6.93059 7.27329 7.63671 8.03026 9.06146 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009632 B = 0.004457 C = 0.003646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2906.204981 B = 6280.773826 C = 7677.807830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.119 4.119 5 C 0.203 3.797 6 N -0.709 5.709 7 C 0.531 3.469 8 O -0.557 6.557 9 C -0.142 4.142 10 H 0.119 0.881 11 C -0.142 4.142 12 C 0.044 3.956 13 O -0.392 6.392 14 C 0.096 3.904 15 H 0.068 0.932 16 C -0.142 4.142 17 C -0.131 4.131 18 C 0.121 3.879 19 N -0.614 5.614 20 C -0.251 4.251 21 H 0.044 0.956 22 C -0.038 4.038 23 N -0.961 5.961 24 Si 0.952 3.048 25 H -0.267 1.267 26 H -0.317 1.317 27 H -0.253 1.253 28 C 0.157 3.843 29 C -0.134 4.134 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.094 0.906 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.408 0.592 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.065 0.935 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.044 0.956 48 H 0.053 0.947 49 H 0.261 0.739 50 H 0.043 0.957 51 H 0.031 0.969 52 H 0.059 0.941 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.753 -7.323 -15.128 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.005 4.005 4 C -0.158 4.158 5 C 0.117 3.883 6 N -0.361 5.361 7 C 0.318 3.682 8 O -0.436 6.436 9 C -0.164 4.164 10 H 0.137 0.863 11 C -0.179 4.179 12 C -0.033 4.033 13 O -0.312 6.312 14 C 0.038 3.962 15 H 0.086 0.914 16 C -0.199 4.199 17 C -0.171 4.171 18 C -0.003 4.003 19 N -0.338 5.338 20 C -0.380 4.380 21 H 0.061 0.939 22 C -0.232 4.232 23 N -0.607 5.607 24 Si 0.780 3.220 25 H -0.194 1.194 26 H -0.247 1.247 27 H -0.177 1.177 28 C 0.032 3.968 29 C -0.173 4.173 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.245 0.755 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.084 0.916 41 H 0.122 0.878 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.090 0.910 46 H 0.114 0.886 47 H 0.061 0.939 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.049 0.951 52 H 0.078 0.922 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.164 -8.083 -15.380 24.423 hybrid contribution -0.274 1.191 0.709 1.413 sum -17.438 -6.892 -14.672 23.808 Atomic orbital electron populations 1.22911 0.79587 1.03712 1.00808 1.87846 1.21457 1.28970 1.95578 1.22500 0.93117 0.84246 1.00638 1.21802 0.94139 0.96337 1.03525 1.19953 0.92811 0.89950 0.85552 1.46084 1.55922 1.29251 1.04863 1.20376 0.78054 0.85840 0.83944 1.90650 1.43082 1.24531 1.85288 1.22971 0.99323 1.00568 0.93506 0.86294 1.22983 0.91747 1.05172 0.98034 1.23303 0.87131 1.02851 0.89975 1.88876 1.23655 1.81869 1.36788 1.22836 0.90683 0.96343 0.86320 0.91403 1.21729 0.93456 1.02764 1.01996 1.22306 1.01616 0.96908 0.96225 1.21421 0.83820 0.96013 0.99086 1.44385 1.01464 1.62665 1.25314 1.18829 0.95470 1.07759 1.15970 0.93852 1.25959 1.01495 0.98830 0.96911 1.69990 1.45211 1.29397 1.16079 0.85847 0.79651 0.76770 0.79744 1.19369 1.24675 1.17680 1.20870 0.97021 0.91030 0.87907 1.22231 0.94821 0.97956 1.02321 0.93076 0.93297 0.88707 0.92109 0.92965 0.90810 0.91070 0.75526 0.89870 0.87293 0.91641 0.87785 0.91384 0.91428 0.91455 0.90972 0.88582 0.93860 0.92868 0.93029 0.93826 0.95114 0.92239 0.90329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 113.37 1.25 1.66 16 2 O -0.42 -10.06 10.70 -148.98 -1.59 -11.65 16 3 C 0.07 1.55 5.48 71.98 0.39 1.94 16 4 C -0.12 -3.11 4.37 30.60 0.13 -2.97 16 5 C 0.20 5.47 0.35 3.63 0.00 5.47 16 6 N -0.71 -16.08 3.10 -422.80 -1.31 -17.39 16 7 C 0.53 12.61 6.34 87.66 0.56 13.17 16 8 O -0.56 -16.66 11.98 -3.04 -0.04 -16.70 16 9 C -0.14 -2.70 2.96 -10.24 -0.03 -2.73 16 10 H 0.12 2.16 8.06 -2.39 -0.02 2.14 16 11 C -0.14 -1.87 6.49 31.58 0.20 -1.66 16 12 C 0.04 0.63 7.70 72.35 0.56 1.19 16 13 O -0.39 -8.35 11.22 -148.98 -1.67 -10.02 16 14 C 0.10 2.06 3.02 31.27 0.09 2.16 16 15 H 0.07 1.66 7.53 -2.39 -0.02 1.64 16 16 C -0.14 -2.98 9.66 71.98 0.70 -2.29 16 17 C -0.13 -3.74 4.72 30.67 0.14 -3.60 16 18 C 0.12 4.45 3.92 86.36 0.34 4.79 16 19 N -0.61 -27.10 2.77 -699.11 -1.94 -29.04 16 20 C -0.25 -13.90 10.04 84.03 0.84 -13.06 16 21 H 0.04 2.70 8.05 -2.91 -0.02 2.68 16 22 C -0.04 -2.13 5.24 84.86 0.44 -1.69 16 23 N -0.96 -59.54 13.97 21.65 0.30 -59.24 16 24 Si 0.95 43.62 24.34 68.60 1.67 45.29 16 25 H -0.27 -11.22 6.61 99.48 0.66 -10.56 16 26 H -0.32 -15.20 7.11 99.48 0.71 -14.49 16 27 H -0.25 -10.66 6.62 99.48 0.66 -10.00 16 28 C 0.16 5.98 6.26 86.36 0.54 6.52 16 29 C -0.13 -4.37 4.63 30.67 0.14 -4.23 16 30 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 31 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.17 6.47 -2.39 -0.02 1.16 16 34 H 0.05 1.04 7.46 -2.39 -0.02 1.02 16 35 H 0.07 2.23 6.30 -2.39 -0.02 2.21 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.41 7.71 7.28 -92.71 -0.67 7.04 16 38 H 0.08 1.05 7.85 -2.39 -0.02 1.03 16 39 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.07 1.56 8.03 -2.39 -0.02 1.55 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 45 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 46 H 0.10 2.09 6.47 -2.38 -0.02 2.07 16 47 H 0.04 1.42 5.91 -2.38 -0.01 1.40 16 48 H 0.05 2.22 4.45 -2.38 -0.01 2.21 16 49 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 50 H 0.04 1.79 7.93 -2.39 -0.02 1.77 16 51 H 0.03 1.12 7.69 -2.39 -0.02 1.10 16 52 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 53 H 0.08 2.61 6.21 -2.39 -0.01 2.59 16 Total: -1.00 -70.56 394.19 1.85 -68.71 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.12 Total: 25.35 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 6.31 Total: 4.69 kcal Atomic # 7 Polarization: -102.72 SS G_CDS: -2.95 Total: -105.67 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -3.30 Total: -38.37 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.67 Total: 45.29 kcal Total: -70.56 1.85 -68.71 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151374192.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.781 kcal (2) G-P(sol) polarization free energy of solvation -70.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds