Wall clock time and date at job start Tue Mar 31 2020 23:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42894 * 114.00849 * 2 1 4 4 C 1.52994 * 109.47607 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.45911 * 299.97276 * 4 3 2 6 6 N 1.46500 * 109.47168 * 60.02509 * 5 4 3 7 7 C 1.34774 * 119.99775 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00266 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99677 * 180.02562 * 7 6 5 10 10 H 1.08998 * 110.80529 * 59.30741 * 9 7 6 11 11 C 1.55000 * 110.90846 * 295.67344 * 9 7 6 12 12 O 1.44377 * 103.49366 * 204.77858 * 11 9 7 13 13 C 1.43744 * 106.97436 * 40.06186 * 12 11 9 14 14 H 1.08999 * 109.87972 * 92.91098 * 13 12 11 15 15 C 1.52994 * 109.88146 * 213.91366 * 13 12 11 16 16 C 1.54166 * 107.29711 * 333.45796 * 13 12 11 17 17 C 1.53045 * 109.46035 * 180.02562 * 4 3 2 18 18 C 1.53196 * 109.31297 * 178.61445 * 17 4 3 19 19 N 1.46926 * 108.77309 * 54.63156 * 18 17 4 20 20 C 1.36941 * 120.62916 * 126.37242 * 19 18 17 21 21 H 1.08002 * 119.99777 * 332.78587 * 20 19 18 22 22 C 1.38813 * 120.00066 * 153.06206 * 20 19 18 23 23 N 1.31620 * 119.99772 * 159.13538 * 22 20 19 24 24 Si 1.86790 * 119.99966 * 339.13612 * 22 20 19 25 25 H 1.48501 * 109.47232 * 93.09297 * 24 22 20 26 26 H 1.48506 * 109.46949 * 213.09115 * 24 22 20 27 27 H 1.48498 * 109.47356 * 333.08835 * 24 22 20 28 28 C 1.46923 * 118.73990 * 306.63958 * 19 18 17 29 29 C 1.52762 * 109.00795 * 53.31677 * 28 19 18 30 30 H 1.09004 * 109.46781 * 300.00051 * 1 2 3 31 31 H 1.08990 * 109.47075 * 59.99337 * 1 2 3 32 32 H 1.08994 * 109.47575 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46785 * 59.99786 * 3 2 1 34 34 H 1.09008 * 109.47025 * 300.00697 * 3 2 1 35 35 H 1.09000 * 109.47067 * 180.02562 * 5 4 3 36 36 H 1.09007 * 109.47199 * 300.02684 * 5 4 3 37 37 H 0.96995 * 119.99544 * 0.02562 * 6 5 4 38 38 H 1.08998 * 110.62026 * 323.28608 * 11 9 7 39 39 H 1.09002 * 110.61632 * 86.11897 * 11 9 7 40 40 H 1.08999 * 109.47138 * 58.54645 * 15 13 12 41 41 H 1.08995 * 109.47390 * 178.54837 * 15 13 12 42 42 H 1.09005 * 109.47312 * 298.54859 * 15 13 12 43 43 H 1.09000 * 110.51774 * 243.39116 * 16 13 12 44 44 H 1.09000 * 110.48194 * 120.73039 * 16 13 12 45 45 H 1.08994 * 109.50108 * 58.66193 * 17 4 3 46 46 H 1.08998 * 109.49734 * 298.56185 * 17 4 3 47 47 H 1.09003 * 109.58414 * 294.84742 * 18 17 4 48 48 H 1.08999 * 109.58656 * 174.42176 * 18 17 4 49 49 H 0.97000 * 120.00093 * 180.02562 * 23 22 20 50 50 H 1.09009 * 109.58540 * 173.14635 * 28 19 18 51 51 H 1.08998 * 109.59212 * 293.57310 * 28 19 18 52 52 H 1.08996 * 109.56795 * 185.55168 * 29 28 19 53 53 H 1.09002 * 109.38687 * 65.50443 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3053 0.0000 4 6 3.5355 1.1844 -0.0006 5 6 3.9872 0.4254 1.2487 6 7 3.3916 -0.9130 1.2490 7 6 3.6513 -1.7659 2.2597 8 8 4.3777 -1.4252 3.1692 9 6 3.0390 -3.1429 2.2597 10 1 3.3373 -3.6992 1.3711 11 6 1.4950 -3.0618 2.3692 12 8 1.1308 -4.3346 2.9452 13 6 2.1149 -4.6383 3.9481 14 1 1.7759 -4.2805 4.9203 15 6 2.3521 -6.1487 4.0037 16 6 3.4161 -3.9152 3.5473 17 6 4.1578 2.5826 0.0000 18 6 5.6843 2.4578 0.0343 19 7 6.1143 1.6063 -1.0832 20 6 7.0595 2.0455 -1.9714 21 1 7.1812 3.1035 -2.1514 22 6 7.8575 1.1307 -2.6447 23 7 8.4578 1.4790 -3.7631 24 14 8.0790 -0.5944 -1.9637 25 1 7.0717 -1.5000 -2.5722 26 1 9.4435 -1.0830 -2.2876 27 1 7.8983 -0.5719 -0.4899 28 6 5.5067 0.2771 -1.2330 29 6 3.9862 0.4241 -1.2500 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8898 32 1 -0.3634 -1.0276 0.0005 33 1 1.6888 1.8462 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 5.0738 0.3396 1.2487 36 1 3.6655 0.9665 2.1387 37 1 2.8109 -1.1855 0.5214 38 1 1.1992 -2.2442 3.0265 39 1 1.0461 -2.9415 1.3832 40 1 2.6831 -6.5007 3.0267 41 1 3.1175 -6.3692 4.7477 42 1 1.4246 -6.6524 4.2763 43 1 4.2065 -4.6371 3.3417 44 1 3.7247 -3.2230 4.3307 45 1 3.8179 3.1318 0.8780 46 1 3.8566 3.1153 -0.9020 47 1 5.9929 2.0065 0.9773 48 1 6.1340 3.4457 -0.0649 49 1 9.0151 0.8396 -4.2338 50 1 5.8392 -0.1734 -2.1683 51 1 5.8004 -0.3556 -0.3955 52 1 3.5241 -0.5630 -1.2616 53 1 3.6861 0.9769 -2.1402 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162335887.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:10 Heat of formation + Delta-G solvation = -127.258674 kcal Electronic energy + Delta-G solvation = -32533.481702 eV Core-core repulsion = 28405.001094 eV Total energy + Delta-G solvation = -4128.480609 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.67975 -40.74421 -39.36091 -38.38441 -36.17838 -34.67484 -33.44487 -33.20357 -32.50872 -31.98231 -29.14753 -27.84243 -27.04937 -26.53056 -25.28068 -24.50674 -24.04355 -22.61716 -22.14289 -21.08709 -20.01107 -18.95457 -18.22919 -17.47756 -17.21619 -17.16658 -16.96398 -16.69330 -16.40440 -16.23195 -16.04993 -15.81924 -15.66399 -15.28144 -14.96390 -14.81075 -14.41334 -14.29455 -14.19446 -14.05646 -13.80733 -13.46729 -13.40780 -13.31458 -13.01013 -12.96398 -12.75437 -12.50489 -12.39121 -12.28279 -12.24384 -12.09383 -11.86497 -11.78112 -11.66396 -11.55062 -11.32953 -11.20710 -10.86436 -10.73552 -10.68999 -10.50399 -9.96485 -8.92286 -8.18997 -5.48413 1.22997 1.36450 1.44469 1.59191 2.14380 2.37378 2.74756 2.94426 3.04234 3.34754 3.35728 3.62611 3.73138 3.78515 3.90113 3.92518 4.00566 4.15132 4.16174 4.22182 4.35728 4.39948 4.45542 4.51275 4.58112 4.59333 4.64597 4.65701 4.69279 4.69776 4.73349 4.78542 4.80722 4.85271 4.94083 4.98298 4.99361 5.01600 5.07760 5.08801 5.16648 5.17601 5.24510 5.28865 5.45366 5.58556 5.86185 5.86374 6.11761 6.25238 6.68270 6.91087 7.30606 7.61901 8.02791 9.01110 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012322 B = 0.003715 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2271.758855 B = 7534.232039 C = 8844.328732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.407 6.407 3 C 0.082 3.918 4 C -0.053 4.053 5 C 0.134 3.866 6 N -0.698 5.698 7 C 0.514 3.486 8 O -0.588 6.588 9 C -0.143 4.143 10 H 0.122 0.878 11 C 0.071 3.929 12 O -0.383 6.383 13 C 0.071 3.929 14 H 0.073 0.927 15 C -0.148 4.148 16 C -0.138 4.138 17 C -0.110 4.110 18 C 0.139 3.861 19 N -0.618 5.618 20 C -0.242 4.242 21 H 0.059 0.941 22 C -0.031 4.031 23 N -0.955 5.955 24 Si 0.939 3.061 25 H -0.275 1.275 26 H -0.311 1.311 27 H -0.275 1.275 28 C 0.124 3.876 29 C -0.108 4.108 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.418 0.582 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.028 0.972 48 H 0.060 0.940 49 H 0.261 0.739 50 H 0.044 0.956 51 H 0.019 0.981 52 H 0.077 0.923 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.857 -8.924 13.261 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.326 6.326 3 C 0.005 3.995 4 C -0.053 4.053 5 C 0.010 3.990 6 N -0.355 5.355 7 C 0.301 3.699 8 O -0.469 6.469 9 C -0.165 4.165 10 H 0.140 0.860 11 C -0.006 4.006 12 O -0.303 6.303 13 C 0.013 3.987 14 H 0.091 0.909 15 C -0.205 4.205 16 C -0.176 4.176 17 C -0.150 4.150 18 C 0.015 3.985 19 N -0.343 5.343 20 C -0.371 4.371 21 H 0.076 0.924 22 C -0.226 4.226 23 N -0.601 5.601 24 Si 0.770 3.230 25 H -0.202 1.202 26 H -0.240 1.240 27 H -0.200 1.200 28 C -0.001 4.001 29 C -0.147 4.147 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.118 0.882 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.086 0.914 37 H 0.262 0.738 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.080 0.920 41 H 0.101 0.899 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.113 0.887 46 H 0.090 0.910 47 H 0.045 0.955 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.037 0.963 52 H 0.096 0.904 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.344 -9.001 13.709 26.917 hybrid contribution 0.867 -0.315 -0.430 1.018 sum -20.477 -9.316 13.279 26.124 Atomic orbital electron populations 1.22904 0.79260 1.03904 1.00672 1.87467 1.21355 1.28249 1.95538 1.22535 0.90630 0.84777 1.01543 1.20707 0.94593 0.96153 0.93864 1.21324 0.97152 0.83025 0.97512 1.46229 1.49722 1.14171 1.25333 1.20680 0.80574 0.87134 0.81557 1.90666 1.39675 1.78625 1.37907 1.22895 0.98449 0.92965 1.02187 0.86042 1.23460 0.90241 0.86472 1.00459 1.88872 1.49570 1.37508 1.54338 1.22876 0.86803 0.97061 0.91925 0.90901 1.21935 1.02822 0.92690 1.03099 1.22961 0.98750 0.99389 0.96475 1.21857 0.95286 0.94469 1.03349 1.21154 0.94084 0.94474 0.88832 1.44480 1.44558 1.15506 1.29724 1.18919 1.10307 0.92918 1.14995 0.92371 1.25777 0.98222 1.01158 0.97410 1.69943 1.36520 1.37086 1.16590 0.86031 0.75534 0.82392 0.79078 1.20187 1.24042 1.19980 1.21237 0.94068 0.86911 0.97900 1.21778 0.94688 1.00737 0.97486 0.93421 0.93440 0.88224 0.91533 0.91924 0.93756 0.91390 0.73832 0.91874 0.86156 0.91958 0.89936 0.91464 0.89341 0.90459 0.88730 0.91023 0.95451 0.92126 0.93003 0.93776 0.96300 0.90417 0.91847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -6.84 6.73 -148.98 -1.00 -7.85 16 3 C 0.08 1.49 4.80 71.98 0.35 1.84 16 4 C -0.05 -1.34 0.51 -52.15 -0.03 -1.36 16 5 C 0.13 3.78 3.80 86.38 0.33 4.11 16 6 N -0.70 -17.60 4.61 -463.05 -2.14 -19.73 16 7 C 0.51 14.12 7.15 87.66 0.63 14.75 16 8 O -0.59 -21.03 15.47 -3.04 -0.05 -21.08 16 9 C -0.14 -2.94 3.52 -10.24 -0.04 -2.98 16 10 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 11 C 0.07 1.19 7.15 72.67 0.52 1.71 16 12 O -0.38 -7.48 11.19 -148.98 -1.67 -9.14 16 13 C 0.07 1.23 4.05 30.99 0.13 1.35 16 14 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 15 C -0.15 -2.03 9.37 71.98 0.67 -1.35 16 16 C -0.14 -2.77 6.05 31.61 0.19 -2.58 16 17 C -0.11 -2.97 4.91 30.67 0.15 -2.82 16 18 C 0.14 5.14 6.05 86.36 0.52 5.66 16 19 N -0.62 -28.64 2.78 -699.91 -1.94 -30.58 16 20 C -0.24 -13.65 10.03 84.03 0.84 -12.81 16 21 H 0.06 3.54 8.05 -2.91 -0.02 3.52 16 22 C -0.03 -1.83 5.23 84.86 0.44 -1.38 16 23 N -0.95 -60.34 13.97 21.65 0.30 -60.04 16 24 Si 0.94 48.33 24.35 68.60 1.67 50.00 16 25 H -0.28 -13.32 6.62 99.48 0.66 -12.66 16 26 H -0.31 -16.27 7.11 99.48 0.71 -15.57 16 27 H -0.27 -14.10 6.64 99.48 0.66 -13.44 16 28 C 0.12 5.22 3.71 86.22 0.32 5.54 16 29 C -0.11 -3.38 4.57 30.53 0.14 -3.24 16 30 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 35 H 0.04 1.59 4.99 -2.39 -0.01 1.58 16 36 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.42 9.05 4.71 -92.71 -0.44 8.61 16 38 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 39 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 43 H 0.09 1.64 7.70 -2.39 -0.02 1.62 16 44 H 0.08 1.86 6.90 -2.39 -0.02 1.84 16 45 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.03 1.02 6.69 -2.39 -0.02 1.01 16 48 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 49 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 50 H 0.04 2.10 4.49 -2.38 -0.01 2.09 16 51 H 0.02 0.84 5.64 -2.39 -0.01 0.82 16 52 H 0.08 2.15 6.50 -2.39 -0.02 2.13 16 53 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -73.60 393.47 1.96 -71.64 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.36 Total: 18.79 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: 6.42 Total: 8.00 kcal Atomic # 7 Polarization: -106.58 SS G_CDS: -3.78 Total: -110.35 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.72 Total: -38.06 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 1.67 Total: 50.00 kcal Total: -73.60 1.96 -71.64 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162335887.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.621 kcal (2) G-P(sol) polarization free energy of solvation -73.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds