Wall clock time and date at job start Tue Mar 31 2020 23:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00437 * 2 1 4 4 C 1.52999 * 109.47354 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46325 * 300.00408 * 4 3 2 6 6 N 1.46500 * 109.46818 * 60.02524 * 5 4 3 7 7 C 1.34774 * 119.99440 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00231 * 359.97438 * 7 6 5 9 9 C 1.50705 * 119.99764 * 179.97438 * 7 6 5 10 10 H 1.08996 * 110.83028 * 303.64667 * 9 7 6 11 11 C 1.54992 * 110.90908 * 67.29358 * 9 7 6 12 12 O 1.44375 * 103.49147 * 155.22231 * 11 9 7 13 13 C 1.43744 * 106.97489 * 319.93684 * 12 11 9 14 14 H 1.08994 * 109.87956 * 267.08969 * 13 12 11 15 15 C 1.52998 * 110.00146 * 146.01061 * 13 12 11 16 16 C 1.54093 * 107.29422 * 26.51423 * 13 12 11 17 17 C 1.53045 * 109.44850 * 59.96833 * 4 3 2 18 18 C 1.53187 * 109.31217 * 181.37677 * 17 4 3 19 19 N 1.46923 * 108.77948 * 305.36602 * 18 17 4 20 20 C 1.36945 * 120.63069 * 233.63526 * 19 18 17 21 21 H 1.07994 * 119.99760 * 152.60717 * 20 19 18 22 22 C 1.38810 * 119.99814 * 332.60146 * 20 19 18 23 23 N 1.31620 * 120.00061 * 159.37407 * 22 20 19 24 24 Si 1.86800 * 119.99975 * 339.37583 * 22 20 19 25 25 H 1.48500 * 109.47593 * 92.92833 * 24 22 20 26 26 H 1.48508 * 109.47062 * 212.92544 * 24 22 20 27 27 H 1.48500 * 109.47251 * 332.92403 * 24 22 20 28 28 C 1.46925 * 118.73785 * 53.60801 * 19 18 17 29 29 C 1.53042 * 109.46100 * 180.02562 * 4 3 2 30 30 H 1.08992 * 109.47524 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46518 * 300.00037 * 1 2 3 32 32 H 1.09003 * 109.47072 * 59.99582 * 1 2 3 33 33 H 1.09009 * 109.46875 * 60.00214 * 3 2 1 34 34 H 1.08998 * 109.47036 * 300.00293 * 3 2 1 35 35 H 1.09006 * 109.46693 * 300.02480 * 5 4 3 36 36 H 1.08997 * 109.46758 * 180.02562 * 5 4 3 37 37 H 0.96998 * 120.00263 * 359.97438 * 6 5 4 38 38 H 1.08999 * 110.61702 * 36.71526 * 11 9 7 39 39 H 1.08999 * 110.74906 * 273.78914 * 11 9 7 40 40 H 1.09004 * 109.47017 * 302.09481 * 15 13 12 41 41 H 1.08997 * 109.47285 * 62.09340 * 15 13 12 42 42 H 1.08996 * 109.47261 * 182.09525 * 15 13 12 43 43 H 1.09005 * 110.48593 * 116.64545 * 16 13 12 44 44 H 1.08996 * 110.49245 * 239.29103 * 16 13 12 45 45 H 1.08997 * 109.49604 * 301.32963 * 17 4 3 46 46 H 1.09006 * 109.49688 * 61.42723 * 17 4 3 47 47 H 1.09008 * 109.58542 * 185.57878 * 18 17 4 48 48 H 1.08996 * 109.58816 * 65.15872 * 18 17 4 49 49 H 0.96993 * 120.00062 * 180.02562 * 23 22 20 50 50 H 1.09004 * 109.58388 * 186.60693 * 28 19 18 51 51 H 1.08995 * 109.70195 * 66.25156 * 28 19 18 52 52 H 1.08998 * 109.49845 * 298.57920 * 29 4 3 53 53 H 1.09003 * 109.49798 * 58.67880 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 3.9862 0.4253 1.2502 6 7 3.3907 -0.9131 1.2497 7 6 3.6488 -1.7658 2.2610 8 8 4.3745 -1.4253 3.1712 9 6 3.0357 -3.1426 2.2608 10 1 1.9494 -3.0831 2.1951 11 6 3.6131 -4.0050 1.1097 12 8 3.4293 -5.3583 1.5780 13 6 3.7384 -5.3622 2.9818 14 1 4.7866 -5.6219 3.1298 15 6 2.8456 -6.3679 3.7114 16 6 3.4705 -3.9411 3.5138 17 6 3.9870 0.4240 -1.2484 18 6 5.5114 0.2748 -1.2273 19 7 6.1150 1.6063 -1.0805 20 6 7.0607 2.0454 -1.9683 21 1 7.1806 3.1032 -2.1502 22 6 7.8651 1.1310 -2.6343 23 7 8.4708 1.4776 -3.7502 24 14 8.0879 -0.5915 -1.9468 25 1 7.0841 -1.5012 -2.5553 26 1 9.4543 -1.0786 -2.2648 27 1 7.9025 -0.5643 -0.4736 28 6 5.6842 2.4579 0.0366 29 6 4.1578 2.5827 0.0013 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.6887 1.8463 0.8901 34 1 1.6887 1.8463 -0.8899 35 1 3.6638 0.9662 2.1400 36 1 5.0728 0.3396 1.2510 37 1 2.8100 -1.1854 0.5220 38 1 4.6715 -3.7900 0.9627 39 1 3.0573 -3.8394 0.1869 40 1 1.7991 -6.1127 3.5444 41 1 3.0404 -7.3702 3.3302 42 1 3.0611 -6.3371 4.7794 43 1 2.6703 -3.9554 4.2538 44 1 4.3788 -3.5160 3.9409 45 1 3.5249 -0.5631 -1.2601 46 1 3.6878 0.9769 -2.1389 47 1 5.8472 -0.1777 -2.1605 48 1 5.8054 -0.3543 -0.3873 49 1 9.0326 0.8385 -4.2158 50 1 6.1340 3.4458 -0.0626 51 1 5.9925 2.0091 0.9808 52 1 3.8571 3.1152 -0.9010 53 1 3.8174 3.1321 0.8791 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162335890.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:55:23 Heat of formation + Delta-G solvation = -127.214835 kcal Electronic energy + Delta-G solvation = -32582.118213 eV Core-core repulsion = 28453.639505 eV Total energy + Delta-G solvation = -4128.478708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.68140 -40.75612 -39.37183 -38.38621 -36.18119 -34.67142 -33.46023 -33.20851 -32.52767 -31.96059 -29.14388 -27.84674 -27.02195 -26.59529 -25.28467 -24.51561 -24.05352 -22.61207 -22.16627 -21.09466 -20.00868 -18.94991 -18.22599 -17.46106 -17.36321 -17.14071 -16.91460 -16.70088 -16.41716 -16.25998 -16.07918 -15.76044 -15.63445 -15.39004 -14.96075 -14.71355 -14.57445 -14.26250 -14.22340 -14.05703 -13.73633 -13.47442 -13.42116 -13.34912 -13.00954 -12.95936 -12.73966 -12.49013 -12.36175 -12.33776 -12.27062 -12.09759 -11.87722 -11.77924 -11.66983 -11.55338 -11.33092 -11.21173 -10.86655 -10.78084 -10.69047 -10.51174 -9.96507 -8.92060 -8.19224 -5.48707 1.22638 1.36160 1.43625 1.58385 2.13776 2.36910 2.73528 2.93047 3.04741 3.34397 3.35276 3.62605 3.71065 3.77124 3.90170 3.91812 3.99483 4.14253 4.14831 4.21119 4.35716 4.39193 4.43568 4.50751 4.57623 4.58899 4.62621 4.63094 4.66192 4.69284 4.72613 4.78352 4.80183 4.85140 4.92978 4.96081 5.00068 5.01394 5.07659 5.08543 5.16549 5.17298 5.24560 5.28563 5.45362 5.58645 5.82925 5.86431 6.11706 6.24746 6.68336 6.91151 7.30754 7.61786 8.02724 9.00930 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.004143 C = 0.003348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.251103 B = 6756.143776 C = 8362.034482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.407 6.407 3 C 0.081 3.919 4 C -0.053 4.053 5 C 0.134 3.866 6 N -0.698 5.698 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.134 4.134 10 H 0.138 0.862 11 C 0.059 3.941 12 O -0.383 6.383 13 C 0.064 3.936 14 H 0.062 0.938 15 C -0.144 4.144 16 C -0.135 4.135 17 C -0.108 4.108 18 C 0.124 3.876 19 N -0.618 5.618 20 C -0.241 4.241 21 H 0.059 0.941 22 C -0.030 4.030 23 N -0.955 5.955 24 Si 0.937 3.063 25 H -0.275 1.275 26 H -0.312 1.312 27 H -0.275 1.275 28 C 0.139 3.861 29 C -0.110 4.110 30 H 0.099 0.901 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.418 0.582 38 H 0.046 0.954 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.019 0.981 49 H 0.261 0.739 50 H 0.060 0.940 51 H 0.027 0.973 52 H 0.071 0.929 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.069 -8.906 13.336 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.327 6.327 3 C 0.005 3.995 4 C -0.053 4.053 5 C 0.010 3.990 6 N -0.355 5.355 7 C 0.300 3.700 8 O -0.469 6.469 9 C -0.155 4.155 10 H 0.155 0.845 11 C -0.019 4.019 12 O -0.302 6.302 13 C 0.007 3.993 14 H 0.080 0.920 15 C -0.201 4.201 16 C -0.173 4.173 17 C -0.147 4.147 18 C -0.001 4.001 19 N -0.343 5.343 20 C -0.371 4.371 21 H 0.077 0.923 22 C -0.224 4.224 23 N -0.601 5.601 24 Si 0.767 3.233 25 H -0.201 1.201 26 H -0.241 1.241 27 H -0.200 1.200 28 C 0.014 3.986 29 C -0.149 4.149 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.139 0.861 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.082 0.918 47 H 0.062 0.938 48 H 0.037 0.963 49 H 0.070 0.930 50 H 0.079 0.921 51 H 0.045 0.955 52 H 0.090 0.910 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.440 -9.034 13.716 27.007 hybrid contribution 0.820 -0.274 -0.385 0.947 sum -20.619 -9.308 13.331 26.258 Atomic orbital electron populations 1.22892 0.79250 1.03859 1.00635 1.87470 1.21392 1.28281 1.95536 1.22543 0.90677 0.84754 1.01540 1.20712 0.94549 0.96184 0.93896 1.21324 0.97145 0.83042 0.97521 1.46232 1.49809 1.14160 1.25254 1.20699 0.80515 0.87211 0.81595 1.90666 1.39670 1.78604 1.37915 1.22855 1.03625 0.91080 0.97977 0.84466 1.23506 1.00148 0.80853 0.97344 1.88877 1.89851 1.27682 1.23790 1.22926 0.99432 0.95820 0.81153 0.91964 1.21913 0.99751 0.98192 1.00293 1.22950 1.03664 0.93527 0.97185 1.21854 0.94631 1.00722 0.97467 1.21323 0.94067 0.86845 0.97884 1.44491 1.44698 1.15332 1.29747 1.18919 1.10062 0.92982 1.15135 0.92316 1.25772 0.98140 1.01052 0.97478 1.69935 1.36163 1.37088 1.16929 0.86070 0.75554 0.82515 0.79124 1.20128 1.24093 1.19996 1.21148 0.94089 0.94491 0.88834 1.21855 0.95273 0.94452 1.03357 0.88292 0.93451 0.93430 0.91554 0.91898 0.91381 0.93767 0.73823 0.93583 0.86143 0.91205 0.91916 0.89636 0.88018 0.90925 0.90408 0.91802 0.93762 0.96286 0.93004 0.92132 0.95486 0.90994 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -6.99 6.73 -148.98 -1.00 -7.99 16 3 C 0.08 1.50 4.80 71.98 0.35 1.85 16 4 C -0.05 -1.35 0.51 -52.15 -0.03 -1.37 16 5 C 0.13 3.78 3.80 86.38 0.33 4.11 16 6 N -0.70 -17.60 4.62 -463.05 -2.14 -19.74 16 7 C 0.51 14.05 7.15 87.66 0.63 14.67 16 8 O -0.59 -20.99 15.45 -3.04 -0.05 -21.04 16 9 C -0.13 -2.71 3.52 -10.24 -0.04 -2.74 16 10 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 11 C 0.06 1.25 7.16 72.66 0.52 1.77 16 12 O -0.38 -8.74 11.19 -148.98 -1.67 -10.41 16 13 C 0.06 1.24 4.05 30.96 0.13 1.36 16 14 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 15 C -0.14 -1.98 9.37 71.98 0.67 -1.31 16 16 C -0.14 -2.69 6.06 31.58 0.19 -2.50 16 17 C -0.11 -3.37 4.59 30.67 0.14 -3.23 16 18 C 0.12 5.22 3.73 86.36 0.32 5.54 16 19 N -0.62 -28.66 2.77 -699.11 -1.94 -30.60 16 20 C -0.24 -13.64 10.04 84.03 0.84 -12.79 16 21 H 0.06 3.58 8.05 -2.91 -0.02 3.55 16 22 C -0.03 -1.75 5.23 84.86 0.44 -1.31 16 23 N -0.95 -60.43 13.97 21.65 0.30 -60.13 16 24 Si 0.94 48.50 24.34 68.60 1.67 50.17 16 25 H -0.27 -13.38 6.62 99.48 0.66 -12.72 16 26 H -0.31 -16.43 7.11 99.48 0.71 -15.72 16 27 H -0.27 -14.19 6.64 99.48 0.66 -13.53 16 28 C 0.14 5.14 6.04 86.36 0.52 5.66 16 29 C -0.11 -2.97 4.91 30.67 0.15 -2.81 16 30 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.04 1.59 4.98 -2.39 -0.01 1.58 16 37 H 0.42 9.05 4.71 -92.71 -0.44 8.61 16 38 H 0.05 1.17 8.04 -2.39 -0.02 1.15 16 39 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 1.58 7.70 -2.38 -0.02 1.56 16 44 H 0.07 1.82 6.86 -2.39 -0.02 1.80 16 45 H 0.08 2.14 6.50 -2.39 -0.02 2.13 16 46 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 47 H 0.04 2.11 4.49 -2.38 -0.01 2.10 16 48 H 0.02 0.84 5.63 -2.39 -0.01 0.83 16 49 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 50 H 0.06 2.27 7.93 -2.38 -0.02 2.25 16 51 H 0.03 1.01 6.70 -2.39 -0.02 0.99 16 52 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 53 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -74.24 393.45 1.96 -72.27 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.36 Total: 18.98 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: 6.42 Total: 8.48 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -3.78 Total: -110.47 kcal Atomic # 8 Polarization: -36.72 SS G_CDS: -2.72 Total: -39.43 kcal Atomic # 14 Polarization: 48.50 SS G_CDS: 1.67 Total: 50.17 kcal Total: -74.24 1.96 -72.27 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162335890.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.941 kcal (2) G-P(sol) polarization free energy of solvation -74.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds