Wall clock time and date at job start Tue Mar 31 2020 23:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99970 * 2 1 4 4 C 1.52994 * 109.47354 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.44943 * 299.96831 * 4 3 2 6 6 N 1.46500 * 109.46996 * 60.02922 * 5 4 3 7 7 C 1.34775 * 119.99860 * 180.02562 * 6 5 4 8 8 O 1.21283 * 120.00036 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00161 * 180.02562 * 7 6 5 10 10 H 1.08995 * 110.55461 * 302.12651 * 9 7 6 11 11 C 1.54999 * 110.61540 * 65.00445 * 9 7 6 12 12 C 1.54814 * 102.09511 * 155.52600 * 11 9 7 13 13 H 1.08997 * 110.48769 * 97.79200 * 12 11 9 14 14 C 1.52997 * 110.49036 * 220.31072 * 12 11 9 15 15 C 1.54102 * 104.18490 * 339.11801 * 12 11 9 16 16 O 1.43749 * 107.29456 * 357.97050 * 15 12 11 17 17 C 1.53034 * 109.46369 * 180.02562 * 4 3 2 18 18 C 1.53188 * 109.31555 * 178.61354 * 17 4 3 19 19 N 1.46924 * 108.77413 * 54.63413 * 18 17 4 20 20 C 1.36943 * 120.62872 * 126.37118 * 19 18 17 21 21 H 1.07992 * 120.00263 * 332.50176 * 20 19 18 22 22 C 1.38814 * 119.99781 * 152.50809 * 20 19 18 23 23 N 1.31622 * 119.99711 * 335.01928 * 22 20 19 24 24 Si 1.86803 * 120.00012 * 155.02565 * 22 20 19 25 25 H 1.48502 * 109.47362 * 89.99535 * 24 22 20 26 26 H 1.48507 * 109.46825 * 329.99509 * 24 22 20 27 27 H 1.48505 * 109.46872 * 209.99631 * 24 22 20 28 28 C 1.46923 * 118.73967 * 306.64437 * 19 18 17 29 29 C 1.52757 * 109.00971 * 53.31004 * 28 19 18 30 30 H 1.08993 * 109.47217 * 299.99751 * 1 2 3 31 31 H 1.09000 * 109.47011 * 59.99946 * 1 2 3 32 32 H 1.09000 * 109.46873 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46890 * 59.99648 * 3 2 1 34 34 H 1.09006 * 109.46651 * 300.00189 * 3 2 1 35 35 H 1.08990 * 109.47452 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.46669 * 300.03746 * 5 4 3 37 37 H 0.96999 * 120.00726 * 0.02562 * 6 5 4 38 38 H 1.09006 * 110.90618 * 273.72044 * 11 9 7 39 39 H 1.08995 * 110.91218 * 37.28970 * 11 9 7 40 40 H 1.08998 * 109.47005 * 59.99385 * 14 12 11 41 41 H 1.08994 * 109.47310 * 179.97438 * 14 12 11 42 42 H 1.09005 * 109.46891 * 300.00013 * 14 12 11 43 43 H 1.09001 * 109.87937 * 117.39383 * 15 12 11 44 44 H 1.08997 * 109.87983 * 238.39350 * 15 12 11 45 45 H 1.09000 * 109.50004 * 58.65900 * 17 4 3 46 46 H 1.09007 * 109.52329 * 298.58270 * 17 4 3 47 47 H 1.09002 * 109.58768 * 294.84610 * 18 17 4 48 48 H 1.08999 * 109.70655 * 174.48902 * 18 17 4 49 49 H 0.96998 * 120.00507 * 354.25639 * 23 22 20 50 50 H 1.09001 * 109.58617 * 173.14661 * 28 19 18 51 51 H 1.09006 * 109.58353 * 293.56722 * 28 19 18 52 52 H 1.08996 * 109.56418 * 185.55617 * 29 28 19 53 53 H 1.09001 * 109.35822 * 65.49916 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9869 0.4259 1.2489 6 7 3.3914 -0.9126 1.2491 7 6 3.6501 -1.7651 2.2604 8 8 4.3756 -1.4239 3.1705 9 6 3.0381 -3.1422 2.2604 10 1 1.9507 -3.0776 2.2216 11 6 3.5778 -3.9793 1.0728 12 6 3.3815 -5.4282 1.5816 13 1 2.4607 -5.8519 1.1807 14 6 4.5808 -6.2975 1.1983 15 6 3.2858 -5.2812 3.1126 16 8 3.4653 -3.8885 3.4202 17 6 4.1576 2.5829 0.0000 18 6 5.6840 2.4582 0.0343 19 7 6.1142 1.6068 -1.0832 20 6 7.0594 2.0462 -1.9714 21 1 7.1778 3.1038 -2.1548 22 6 7.8652 1.1320 -2.6361 23 7 8.0928 -0.0514 -2.1068 24 14 8.6266 1.5815 -4.2816 25 1 9.9525 2.2118 -4.0579 26 1 7.7388 2.5354 -4.9938 27 1 8.7938 0.3545 -5.1013 28 6 5.5066 0.2776 -1.2331 29 6 3.9862 0.4245 -1.2501 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 5.0734 0.3401 1.2490 36 1 3.6649 0.9669 2.1386 37 1 2.8109 -1.1854 0.5214 38 1 2.9905 -3.8005 0.1721 39 1 4.6323 -3.7683 0.8956 40 1 5.4858 -5.8851 1.6442 41 1 4.4257 -7.3124 1.5644 42 1 4.6854 -6.3142 0.1134 43 1 2.3062 -5.6134 3.4563 44 1 4.0664 -5.8724 3.5913 45 1 3.8176 3.1321 0.8780 46 1 3.8563 3.1161 -0.9017 47 1 5.9927 2.0070 0.9773 48 1 6.1357 3.4454 -0.0635 49 1 7.7674 -0.2551 -1.2161 50 1 5.8392 -0.1728 -2.1683 51 1 5.8005 -0.3551 -0.3956 52 1 3.5242 -0.5626 -1.2617 53 1 3.6865 0.9775 -2.1403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162366520.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:45 Heat of formation + Delta-G solvation = -131.918231 kcal Electronic energy + Delta-G solvation = -32564.716644 eV Core-core repulsion = 28436.033982 eV Total energy + Delta-G solvation = -4128.682662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.65092 -40.74455 -39.31026 -38.39795 -36.29599 -34.86840 -34.43980 -32.73473 -31.75745 -31.32664 -28.87566 -27.65265 -27.21630 -26.79958 -25.49222 -24.53212 -23.93177 -22.56404 -21.56359 -21.25324 -20.05156 -19.29400 -18.32213 -17.77394 -17.19217 -17.10550 -16.91570 -16.53466 -16.13822 -16.08559 -15.98998 -15.57663 -15.55265 -15.33396 -15.21306 -14.79673 -14.56715 -14.35135 -14.14815 -13.92808 -13.64515 -13.54278 -13.34719 -13.11956 -13.00905 -12.77881 -12.63407 -12.51315 -12.33404 -12.15691 -12.03249 -11.95803 -11.90030 -11.72276 -11.70060 -11.57224 -11.35568 -11.11073 -10.91402 -10.61355 -10.54123 -10.44934 -10.01243 -8.91220 -8.24058 -5.38825 1.54714 1.57899 1.65948 1.83283 1.91010 2.66136 2.72709 3.06478 3.22716 3.41882 3.53800 3.60952 3.66461 3.80969 3.86475 3.88364 4.03883 4.07082 4.16841 4.21022 4.35792 4.42367 4.47082 4.54193 4.55018 4.58485 4.64371 4.64918 4.68019 4.71566 4.73256 4.77047 4.80717 4.89742 4.91855 4.95440 5.02121 5.03618 5.10081 5.12703 5.15683 5.21682 5.23794 5.33404 5.46354 5.53299 5.79536 5.84862 6.22627 6.37897 6.66355 7.06473 7.28505 7.79656 8.23822 8.99772 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010038 B = 0.003869 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.806351 B = 7235.533198 C = 8794.953699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.082 3.918 4 C -0.051 4.051 5 C 0.140 3.860 6 N -0.690 5.690 7 C 0.504 3.496 8 O -0.589 6.589 9 C 0.066 3.934 10 H 0.129 0.871 11 C -0.141 4.141 12 C -0.115 4.115 13 H 0.119 0.881 14 C -0.146 4.146 15 C 0.040 3.960 16 O -0.388 6.388 17 C -0.108 4.108 18 C 0.139 3.861 19 N -0.615 5.615 20 C -0.354 4.354 21 H 0.053 0.947 22 C -0.077 4.077 23 N -0.944 5.944 24 Si 1.116 2.884 25 H -0.286 1.286 26 H -0.272 1.272 27 H -0.290 1.290 28 C 0.163 3.837 29 C -0.104 4.104 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.419 0.581 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.006 0.994 48 H 0.053 0.947 49 H 0.250 0.750 50 H 0.040 0.960 51 H -0.008 1.008 52 H 0.073 0.927 53 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.430 -6.985 3.712 22.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.328 6.328 3 C 0.006 3.994 4 C -0.051 4.051 5 C 0.015 3.985 6 N -0.349 5.349 7 C 0.290 3.710 8 O -0.469 6.469 9 C 0.006 3.994 10 H 0.146 0.854 11 C -0.179 4.179 12 C -0.134 4.134 13 H 0.137 0.863 14 C -0.203 4.203 15 C -0.036 4.036 16 O -0.307 6.307 17 C -0.147 4.147 18 C 0.014 3.986 19 N -0.340 5.340 20 C -0.484 4.484 21 H 0.071 0.929 22 C -0.273 4.273 23 N -0.586 5.586 24 Si 0.941 3.059 25 H -0.213 1.213 26 H -0.197 1.197 27 H -0.216 1.216 28 C 0.037 3.963 29 C -0.143 4.143 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.120 0.880 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.054 0.946 36 H 0.080 0.920 37 H 0.263 0.737 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.083 0.917 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.024 0.976 48 H 0.072 0.928 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.010 0.990 52 H 0.092 0.908 53 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.835 -7.371 3.264 21.411 hybrid contribution -0.454 0.723 1.184 1.459 sum -20.289 -6.648 4.447 21.809 Atomic orbital electron populations 1.22922 0.79101 1.04034 1.00685 1.87476 1.21565 1.28196 1.95537 1.22534 0.90519 0.84828 1.01542 1.20689 0.94638 0.95995 0.93808 1.21240 0.96742 0.82916 0.97554 1.46024 1.49930 1.13903 1.24996 1.20925 0.80894 0.87343 0.81825 1.90678 1.39472 1.78566 1.38179 1.23055 1.00325 0.88824 0.87210 0.85408 1.23255 1.01938 0.94770 0.97969 1.22554 1.01645 0.94484 0.94679 0.86268 1.21847 0.96392 1.00010 1.02077 1.23595 1.02944 0.81400 0.95707 1.88979 1.87025 1.18473 1.36227 1.21827 0.95248 0.94535 1.03080 1.21066 0.94184 0.94296 0.89053 1.44348 1.44778 1.15722 1.29176 1.20270 1.13733 0.93842 1.20527 0.92933 1.27203 0.96767 0.95349 1.07991 1.70877 1.45290 1.25485 1.16935 0.82864 0.75541 0.75209 0.72320 1.21279 1.19740 1.21645 1.20645 0.92050 0.86314 0.97276 1.21773 0.95473 1.00195 0.96892 0.93575 0.93190 0.88034 0.91760 0.91550 0.94597 0.92044 0.73681 0.86716 0.92800 0.94365 0.90290 0.91749 0.89602 0.89526 0.89282 0.90725 0.97569 0.92838 0.94033 0.94164 0.98970 0.90846 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.41 -7.91 6.73 -148.98 -1.00 -8.91 16 3 C 0.08 1.73 4.80 71.98 0.35 2.08 16 4 C -0.05 -1.49 0.51 -52.16 -0.03 -1.51 16 5 C 0.14 4.73 3.80 86.38 0.33 5.06 16 6 N -0.69 -20.91 4.61 -463.07 -2.14 -23.04 16 7 C 0.50 17.35 7.21 87.66 0.63 17.98 16 8 O -0.59 -26.71 16.57 15.20 0.25 -26.46 16 9 C 0.07 1.69 3.76 30.53 0.11 1.80 16 10 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 11 C -0.14 -3.04 6.12 31.90 0.20 -2.84 16 12 C -0.12 -1.86 3.64 -9.80 -0.04 -1.90 16 13 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 14 C -0.15 -2.45 8.93 71.98 0.64 -1.81 16 15 C 0.04 0.76 7.37 72.35 0.53 1.30 16 16 O -0.39 -11.59 10.80 -130.75 -1.41 -13.00 16 17 C -0.11 -3.30 4.90 30.67 0.15 -3.15 16 18 C 0.14 5.83 6.05 86.36 0.52 6.36 16 19 N -0.62 -31.13 2.86 -699.94 -2.00 -33.13 16 20 C -0.35 -20.03 9.49 84.03 0.80 -19.24 16 21 H 0.05 2.95 7.94 -2.91 -0.02 2.93 16 22 C -0.08 -4.46 4.68 84.86 0.40 -4.07 16 23 N -0.94 -59.20 12.41 21.65 0.27 -58.94 16 24 Si 1.12 51.46 29.99 68.60 2.06 53.52 16 25 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 C 0.16 7.74 4.20 86.22 0.36 8.10 16 29 C -0.10 -3.64 4.57 30.53 0.14 -3.50 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.04 1.55 4.99 -2.39 -0.01 1.54 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.42 10.66 4.71 -92.71 -0.44 10.22 16 38 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.05 1.53 7.78 -2.39 -0.02 1.51 16 40 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.09 1.63 7.70 -2.39 -0.02 1.61 16 45 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 46 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 47 H 0.01 0.29 6.69 -2.39 -0.02 0.27 16 48 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 49 H 0.25 16.30 6.71 -92.71 -0.62 15.67 16 50 H 0.04 2.19 6.30 -2.39 -0.02 2.18 16 51 H -0.01 -0.40 6.43 -2.38 -0.02 -0.41 16 52 H 0.07 2.30 6.50 -2.39 -0.02 2.28 16 53 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -80.14 400.29 2.97 -77.17 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.60 Total: 26.54 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.35 Total: 6.26 kcal Atomic # 7 Polarization: -111.24 SS G_CDS: -3.87 Total: -115.11 kcal Atomic # 8 Polarization: -46.21 SS G_CDS: -2.16 Total: -48.37 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.06 Total: 53.52 kcal Total: -80.14 2.97 -77.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162366520.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.753 kcal (2) G-P(sol) polarization free energy of solvation -80.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds