Wall clock time and date at job start Wed Apr 1 2020 00:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 113.99830 * 2 1 4 4 C 1.53005 * 109.46923 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46127 * 300.00013 * 4 3 2 6 6 N 1.46497 * 109.46981 * 59.99742 * 5 4 3 7 7 C 1.34775 * 120.00211 * 179.97438 * 6 5 4 8 8 O 1.21287 * 119.99782 * 0.02562 * 7 6 5 9 9 C 1.50701 * 120.00502 * 180.02562 * 7 6 5 10 10 H 1.08998 * 110.56437 * 21.59219 * 9 7 6 11 11 C 1.54503 * 110.51464 * 144.27512 * 9 7 6 12 12 C 1.54474 * 104.06644 * 118.64377 * 11 9 7 13 13 O 1.44426 * 104.90205 * 335.96745 * 12 11 9 14 14 C 1.44698 * 105.13693 * 40.49240 * 13 12 11 15 15 H 1.09001 * 110.35227 * 78.36343 * 14 13 12 16 16 C 1.52994 * 110.35462 * 200.67542 * 14 13 12 17 17 C 1.53036 * 109.45934 * 59.97346 * 4 3 2 18 18 C 1.53166 * 109.32778 * 181.38583 * 17 4 3 19 19 N 1.46930 * 108.76449 * 305.35706 * 18 17 4 20 20 C 1.36939 * 120.62957 * 233.62672 * 19 18 17 21 21 H 1.07997 * 120.00132 * 152.34057 * 20 19 18 22 22 C 1.38813 * 119.99982 * 332.35186 * 20 19 18 23 23 N 1.31615 * 119.99989 * 343.64602 * 22 20 19 24 24 Si 1.86803 * 120.00180 * 163.65694 * 22 20 19 25 25 H 1.48496 * 109.47240 * 59.99240 * 24 22 20 26 26 H 1.48499 * 109.47289 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46700 * 299.99456 * 24 22 20 28 28 C 1.46921 * 118.73983 * 53.60742 * 19 18 17 29 29 C 1.53044 * 109.45795 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.46588 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47090 * 299.99496 * 1 2 3 32 32 H 1.09001 * 109.47358 * 59.99876 * 1 2 3 33 33 H 1.08999 * 109.46950 * 60.00405 * 3 2 1 34 34 H 1.09000 * 109.47372 * 300.00354 * 3 2 1 35 35 H 1.09000 * 109.46693 * 300.00469 * 5 4 3 36 36 H 1.08993 * 109.47162 * 180.02562 * 5 4 3 37 37 H 0.97005 * 120.00663 * 0.02562 * 6 5 4 38 38 H 1.09002 * 110.51007 * 359.97438 * 11 9 7 39 39 H 1.09002 * 110.63008 * 237.35142 * 11 9 7 40 40 H 1.08998 * 110.37425 * 94.85095 * 12 11 9 41 41 H 1.09000 * 110.37495 * 217.08298 * 12 11 9 42 42 H 1.09001 * 109.46921 * 169.54050 * 16 14 13 43 43 H 1.08994 * 109.47550 * 289.54727 * 16 14 13 44 44 H 1.09000 * 109.46858 * 49.54636 * 16 14 13 45 45 H 1.09002 * 109.49990 * 301.32111 * 17 4 3 46 46 H 1.09006 * 109.50143 * 61.42092 * 17 4 3 47 47 H 1.08994 * 109.59249 * 185.57381 * 18 17 4 48 48 H 1.08997 * 109.59140 * 65.13488 * 18 17 4 49 49 H 0.96998 * 120.00193 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58613 * 186.60219 * 28 19 18 51 51 H 1.09004 * 109.59024 * 66.18218 * 28 19 18 52 52 H 1.08999 * 109.49404 * 298.57968 * 29 4 3 53 53 H 1.09001 * 109.49682 * 58.67361 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9872 0.4252 1.2484 6 7 3.3912 -0.9131 1.2483 7 6 3.6507 -1.7665 2.2586 8 8 4.3775 -1.4264 3.1681 9 6 3.0381 -3.1434 2.2583 10 1 2.7457 -3.4321 1.2487 11 6 4.0234 -4.1745 2.8524 12 6 3.2862 -4.7271 4.0923 13 8 2.3518 -3.6897 4.4618 14 6 1.8220 -3.1948 3.2096 15 1 1.0656 -3.8772 2.8219 16 6 1.2327 -1.7954 3.3970 17 6 3.9862 0.4249 -1.2503 18 6 5.5104 0.2754 -1.2305 19 7 6.1140 1.6070 -1.0837 20 6 7.0590 2.0464 -1.9720 21 1 7.1758 3.1040 -2.1569 22 6 7.8666 1.1325 -2.6349 23 7 7.9604 -0.1040 -2.1939 24 14 8.8206 1.6578 -4.1527 25 1 9.7462 2.7632 -3.7975 26 1 9.6016 0.5055 -4.6698 27 1 7.8725 2.1222 -5.1969 28 6 5.6840 2.4582 0.0340 29 6 4.1577 2.5829 0.0000 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6886 1.8465 -0.8899 35 1 3.6658 0.9660 2.1385 36 1 5.0737 0.3394 1.2483 37 1 2.8102 -1.1853 0.5207 38 1 4.9539 -3.6886 3.1459 39 1 4.2204 -4.9735 2.1375 40 1 2.7543 -5.6445 3.8400 41 1 3.9914 -4.9090 4.9033 42 1 1.0083 -1.3622 2.4223 43 1 0.3170 -1.8625 3.9843 44 1 1.9530 -1.1647 3.9178 45 1 3.5244 -0.5624 -1.2621 46 1 3.6863 0.9780 -2.1404 47 1 5.8455 -0.1767 -2.1639 48 1 5.8051 -0.3538 -0.3907 49 1 8.5250 -0.7425 -2.6569 50 1 6.1337 3.4462 -0.0651 51 1 5.9929 2.0069 0.9769 52 1 3.8561 3.1157 -0.9019 53 1 3.8178 3.1319 0.8782 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162545687.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:56 Heat of formation + Delta-G solvation = -127.500208 kcal Electronic energy + Delta-G solvation = -32911.264712 eV Core-core repulsion = 28782.773629 eV Total energy + Delta-G solvation = -4128.491083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.71734 -40.64980 -39.01281 -38.25579 -36.04701 -34.62096 -33.44230 -32.61518 -32.39781 -31.59961 -28.95567 -28.16017 -27.06688 -26.48368 -25.46808 -23.92764 -23.13223 -22.96217 -22.48453 -20.86542 -19.76246 -18.68967 -18.14005 -17.32591 -17.07488 -16.98769 -16.84550 -16.76314 -16.46970 -16.31139 -15.91385 -15.63242 -15.31374 -15.24148 -15.07497 -14.64332 -14.43455 -14.11394 -13.80686 -13.69931 -13.35978 -13.28357 -13.21209 -13.03949 -12.94609 -12.85198 -12.59866 -12.53765 -12.29711 -12.27921 -12.23633 -12.00376 -11.95587 -11.88988 -11.82583 -11.42967 -11.20560 -11.10607 -10.86700 -10.57956 -10.52115 -10.44837 -9.85515 -8.64950 -7.85427 -5.31200 1.46721 1.48423 1.55540 1.70583 2.26858 2.51942 2.86840 2.94763 3.29014 3.50720 3.67914 3.69901 3.75959 3.86583 4.00578 4.02750 4.13365 4.24046 4.29410 4.38881 4.40996 4.48316 4.50410 4.53165 4.57259 4.64810 4.66940 4.70659 4.72991 4.74970 4.85152 4.87389 4.92225 4.92575 4.98167 4.99917 5.04226 5.11316 5.17719 5.23314 5.25926 5.29485 5.37548 5.50767 5.64402 5.69309 5.81433 5.89464 6.29194 6.40228 6.81107 7.16564 7.44827 7.88525 8.39788 9.20253 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013399 B = 0.003560 C = 0.003089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.271991 B = 7862.325024 C = 9061.857668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.083 3.917 4 C -0.051 4.051 5 C 0.142 3.858 6 N -0.696 5.696 7 C 0.515 3.485 8 O -0.594 6.594 9 C -0.141 4.141 10 H 0.129 0.871 11 C -0.145 4.145 12 C 0.049 3.951 13 O -0.396 6.396 14 C 0.090 3.910 15 H 0.114 0.886 16 C -0.153 4.153 17 C -0.108 4.108 18 C 0.182 3.818 19 N -0.608 5.608 20 C -0.263 4.263 21 H 0.068 0.932 22 C -0.051 4.051 23 N -0.937 5.937 24 Si 0.967 3.033 25 H -0.277 1.277 26 H -0.296 1.296 27 H -0.275 1.275 28 C 0.138 3.862 29 C -0.109 4.109 30 H 0.101 0.899 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.035 0.965 37 H 0.417 0.583 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.032 0.968 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.050 0.950 48 H -0.012 1.012 49 H 0.248 0.752 50 H 0.056 0.944 51 H 0.006 0.994 52 H 0.073 0.927 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.976 -5.332 5.731 22.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C 0.006 3.994 4 C -0.052 4.052 5 C 0.017 3.983 6 N -0.352 5.352 7 C 0.303 3.697 8 O -0.476 6.476 9 C -0.162 4.162 10 H 0.147 0.853 11 C -0.183 4.183 12 C -0.028 4.028 13 O -0.316 6.316 14 C 0.033 3.967 15 H 0.132 0.868 16 C -0.210 4.210 17 C -0.147 4.147 18 C 0.056 3.944 19 N -0.332 5.332 20 C -0.393 4.393 21 H 0.086 0.914 22 C -0.246 4.246 23 N -0.583 5.583 24 Si 0.795 3.205 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.201 1.201 28 C 0.012 3.988 29 C -0.148 4.148 30 H 0.120 0.880 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.053 0.947 37 H 0.260 0.740 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.006 0.994 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.024 0.976 52 H 0.092 0.908 53 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.330 -5.274 6.486 21.981 hybrid contribution 1.146 0.274 -1.119 1.625 sum -19.184 -4.999 5.367 20.538 Atomic orbital electron populations 1.22926 0.79308 1.03980 1.00650 1.87500 1.21362 1.28139 1.95498 1.22527 0.90805 0.84780 1.01247 1.20687 0.94339 0.96063 0.94081 1.21167 0.96734 0.83259 0.97102 1.46224 1.49687 1.14058 1.25246 1.20789 0.80092 0.87532 0.81303 1.90663 1.39987 1.78781 1.38138 1.22862 0.97724 0.91869 1.03785 0.85264 1.22966 0.98446 0.98200 0.98731 1.23505 0.91437 0.91120 0.96702 1.89192 1.59599 1.54120 1.28700 1.23087 0.93465 0.97242 0.82921 0.86819 1.21929 1.01043 0.94447 1.03541 1.21920 0.96593 0.99702 0.96514 1.20538 0.89849 0.85715 0.98256 1.44308 1.44838 1.15432 1.28604 1.19530 1.10639 0.92521 1.16649 0.91410 1.25793 0.99023 0.96622 1.03195 1.70202 1.42092 1.05243 1.40763 0.85346 0.78337 0.76756 0.80031 1.20318 1.22239 1.20119 1.21071 0.93983 0.94373 0.89332 1.21845 0.95569 0.94537 1.02843 0.88036 0.93440 0.93427 0.91963 0.91856 0.92604 0.94662 0.73977 0.92727 0.87370 0.89044 0.89184 0.89156 0.90306 0.94832 0.91392 0.92502 0.93187 0.99425 0.94284 0.92583 0.97643 0.90809 0.89573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.80 6.73 -148.98 -1.00 -8.81 16 3 C 0.08 1.76 4.80 71.98 0.35 2.11 16 4 C -0.05 -1.51 0.51 -52.15 -0.03 -1.54 16 5 C 0.14 4.81 3.80 86.38 0.33 5.13 16 6 N -0.70 -20.79 4.46 -463.07 -2.06 -22.86 16 7 C 0.52 16.75 4.77 87.66 0.42 17.17 16 8 O -0.59 -25.32 15.74 -3.05 -0.05 -25.36 16 9 C -0.14 -3.27 3.43 -10.52 -0.04 -3.31 16 10 H 0.13 2.19 8.11 -2.39 -0.02 2.18 16 11 C -0.15 -3.37 6.59 31.61 0.21 -3.16 16 12 C 0.05 0.99 7.62 72.48 0.55 1.54 16 13 O -0.40 -10.30 11.37 -148.98 -1.69 -12.00 16 14 C 0.09 1.85 3.84 31.10 0.12 1.97 16 15 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 16 C -0.15 -3.19 8.55 71.98 0.62 -2.57 16 17 C -0.11 -3.85 4.59 30.66 0.14 -3.71 16 18 C 0.18 8.81 4.84 86.35 0.42 9.23 16 19 N -0.61 -30.65 3.00 -699.17 -2.09 -32.74 16 20 C -0.26 -14.58 9.59 84.03 0.81 -13.78 16 21 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 22 C -0.05 -2.89 4.94 84.86 0.42 -2.48 16 23 N -0.94 -56.64 11.12 21.65 0.24 -56.40 16 24 Si 0.97 45.25 29.58 68.60 2.03 47.28 16 25 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 26 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 28 C 0.14 5.72 6.05 86.36 0.52 6.24 16 29 C -0.11 -3.33 4.91 30.67 0.15 -3.18 16 30 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.04 1.55 4.98 -2.39 -0.01 1.53 16 37 H 0.42 10.69 4.68 -92.70 -0.43 10.26 16 38 H 0.05 1.68 7.07 -2.39 -0.02 1.66 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.85 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.09 1.61 7.87 -2.39 -0.02 1.59 16 43 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.03 0.95 7.15 -2.39 -0.02 0.94 16 45 H 0.07 2.20 6.50 -2.39 -0.02 2.19 16 46 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 47 H 0.05 2.78 6.00 -2.39 -0.01 2.76 16 48 H -0.01 -0.66 6.69 -2.39 -0.02 -0.68 16 49 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.06 2.27 7.93 -2.39 -0.02 2.25 16 51 H 0.01 0.25 6.69 -2.39 -0.02 0.24 16 52 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 53 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -76.12 397.00 2.05 -74.06 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: 0.46 Total: 25.57 kcal Atomic # 6 Polarization: 5.02 SS G_CDS: 6.23 Total: 11.25 kcal Atomic # 7 Polarization: -108.08 SS G_CDS: -3.92 Total: -112.00 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -2.74 Total: -46.17 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.12 2.05 -74.06 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162545687.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.436 kcal (2) G-P(sol) polarization free energy of solvation -76.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds