Wall clock time and date at job start Wed Apr 1 2020 00:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99633 * 2 1 4 4 C 1.52998 * 109.46882 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46252 * 59.99684 * 4 3 2 6 6 N 1.46499 * 109.47172 * 300.00231 * 5 4 3 7 7 C 1.34778 * 120.00021 * 179.97438 * 6 5 4 8 8 O 1.21284 * 119.99820 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.99997 * 179.97438 * 7 6 5 10 10 H 1.08994 * 110.80095 * 62.17232 * 9 7 6 11 11 C 1.54816 * 110.90374 * 298.55003 * 9 7 6 12 12 C 1.54110 * 104.18200 * 220.91991 * 11 9 7 13 13 O 1.43739 * 107.29396 * 357.97007 * 12 11 9 14 14 C 1.44386 * 106.97712 * 26.51538 * 13 12 11 15 15 H 1.09000 * 110.61766 * 78.43593 * 14 13 12 16 16 C 1.52999 * 110.61603 * 201.43732 * 14 13 12 17 17 C 1.53034 * 109.46004 * 300.02347 * 4 3 2 18 18 C 1.53164 * 109.33217 * 301.36123 * 17 4 3 19 19 N 1.46925 * 108.76578 * 305.35652 * 18 17 4 20 20 C 1.36943 * 120.63098 * 233.63137 * 19 18 17 21 21 H 1.08003 * 120.00032 * 151.80797 * 20 19 18 22 22 C 1.38812 * 119.99496 * 331.80672 * 20 19 18 23 23 N 1.31613 * 120.00175 * 343.08057 * 22 20 19 24 24 Si 1.86796 * 119.99725 * 163.08278 * 22 20 19 25 25 H 1.48503 * 109.47114 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47287 * 119.99540 * 24 22 20 27 27 H 1.48503 * 109.47188 * 239.99971 * 24 22 20 28 28 C 1.46925 * 118.73981 * 53.60428 * 19 18 17 29 29 C 1.53045 * 109.46294 * 179.97438 * 4 3 2 30 30 H 1.08993 * 109.47076 * 300.00289 * 1 2 3 31 31 H 1.09000 * 109.47099 * 60.00247 * 1 2 3 32 32 H 1.09003 * 109.46677 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47429 * 59.99561 * 3 2 1 34 34 H 1.09001 * 109.47068 * 299.99621 * 3 2 1 35 35 H 1.09004 * 109.47288 * 60.00078 * 5 4 3 36 36 H 1.08999 * 109.47198 * 179.97438 * 5 4 3 37 37 H 0.97002 * 119.99738 * 359.97438 * 6 5 4 38 38 H 1.08996 * 110.48856 * 339.59450 * 11 9 7 39 39 H 1.08998 * 110.48629 * 102.11772 * 11 9 7 40 40 H 1.08999 * 109.87410 * 117.39625 * 12 11 9 41 41 H 1.09005 * 109.87644 * 238.54693 * 12 11 9 42 42 H 1.09007 * 109.46643 * 174.07074 * 16 14 13 43 43 H 1.09001 * 109.47367 * 294.06898 * 16 14 13 44 44 H 1.08999 * 109.47514 * 54.07135 * 16 14 13 45 45 H 1.09006 * 109.49870 * 61.30165 * 17 4 3 46 46 H 1.09008 * 109.50378 * 181.39203 * 17 4 3 47 47 H 1.08992 * 109.59594 * 185.56975 * 18 17 4 48 48 H 1.08998 * 109.70525 * 65.20441 * 18 17 4 49 49 H 0.96999 * 120.00005 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.58838 * 186.60795 * 28 19 18 51 51 H 1.08996 * 109.58817 * 66.18450 * 28 19 18 52 52 H 1.08997 * 109.50139 * 178.60580 * 29 4 3 53 53 H 1.09008 * 109.49390 * 298.70735 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9862 0.4256 -1.2502 6 7 3.3902 -0.9127 -1.2501 7 6 3.6482 -1.7654 -2.2615 8 8 4.3742 -1.4249 -3.1714 9 6 3.0356 -3.1423 -2.2611 10 1 1.9480 -3.0820 -2.2984 11 6 3.5020 -3.9540 -1.0281 12 6 3.7567 -5.3694 -1.5821 13 8 3.4123 -5.3504 -2.9775 14 6 3.5840 -3.9919 -3.4357 15 1 4.6384 -3.7749 -3.6069 16 6 2.7682 -3.7448 -4.7062 17 6 3.9872 0.4245 1.2483 18 6 3.5047 1.1687 2.4971 19 7 3.9787 2.5579 2.4321 20 6 4.6887 3.1020 3.4690 21 1 5.4014 3.8912 3.2800 22 6 4.4924 2.6392 4.7628 23 7 3.4189 1.9357 5.0543 24 14 5.7518 3.0149 6.0903 25 1 6.8594 3.8156 5.5094 26 1 5.1046 3.7843 7.1831 27 1 6.2930 1.7431 6.6334 28 6 3.6770 3.3519 1.2333 29 6 4.1577 2.5829 -0.0013 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.6641 0.9666 -2.1400 36 1 5.0728 0.3398 -1.2511 37 1 2.8099 -1.1851 -0.5222 38 1 4.4207 -3.5332 -0.6195 39 1 2.7215 -3.9747 -0.2675 40 1 4.8084 -5.6300 -1.4633 41 1 3.1321 -6.0913 -1.0559 42 1 2.8266 -2.6903 -4.9760 43 1 3.1691 -4.3505 -5.5190 44 1 1.7279 -4.0174 -4.5289 45 1 3.5626 -0.5794 1.2367 46 1 5.0752 0.3596 1.2612 47 1 3.9068 0.6867 3.3881 48 1 2.4154 1.1557 2.5347 49 1 3.2816 1.6126 5.9586 50 1 4.1929 4.3104 1.2905 51 1 2.6017 3.5170 1.1654 52 1 5.2440 2.4978 0.0232 53 1 3.8542 3.1157 -0.9026 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162545689.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:16:05 Heat of formation + Delta-G solvation = -129.690337 kcal Electronic energy + Delta-G solvation = -32289.732998 eV Core-core repulsion = 28161.146944 eV Total energy + Delta-G solvation = -4128.586054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.60952 -40.69698 -39.28828 -38.03610 -36.27342 -34.68342 -33.52189 -32.62363 -32.24175 -31.61362 -28.84867 -28.33771 -27.27568 -26.09568 -25.67650 -23.95600 -23.31169 -22.76923 -22.23070 -21.04751 -19.84625 -18.81004 -18.31928 -17.37715 -17.25740 -16.95742 -16.82029 -16.73861 -16.21170 -16.07940 -15.85727 -15.54895 -15.41196 -15.21088 -14.87028 -14.77631 -14.54464 -14.36983 -14.02146 -13.76263 -13.51300 -13.31212 -13.28233 -13.16985 -12.99546 -12.82470 -12.61749 -12.55789 -12.36106 -12.29675 -12.20614 -12.05803 -11.95076 -11.82396 -11.68241 -11.44211 -11.24632 -11.09833 -10.85427 -10.60256 -10.55772 -10.43407 -9.92599 -8.63258 -7.86047 -5.30265 1.45090 1.48269 1.57488 1.64181 2.18330 2.51639 2.77193 2.91595 3.28839 3.51153 3.64184 3.69782 3.75863 3.78024 3.90529 4.00146 4.10363 4.18687 4.27338 4.31913 4.40539 4.45882 4.50821 4.54613 4.62462 4.63769 4.65979 4.70096 4.71473 4.77333 4.79933 4.85564 4.91093 4.93042 4.95024 5.03769 5.06514 5.08284 5.17388 5.23571 5.23974 5.27078 5.38677 5.51159 5.61456 5.67564 5.81948 5.89242 6.23183 6.41435 6.72153 7.17758 7.32668 7.89577 8.39822 9.19685 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.002935 C = 0.002799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.169923 B = 9536.398542 C = 9999.441441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.401 6.401 3 C 0.079 3.921 4 C -0.049 4.049 5 C 0.141 3.859 6 N -0.700 5.700 7 C 0.519 3.481 8 O -0.585 6.585 9 C -0.134 4.134 10 H 0.129 0.871 11 C -0.145 4.145 12 C 0.045 3.955 13 O -0.389 6.389 14 C 0.091 3.909 15 H 0.062 0.938 16 C -0.139 4.139 17 C -0.110 4.110 18 C 0.185 3.815 19 N -0.610 5.610 20 C -0.259 4.259 21 H 0.064 0.936 22 C -0.048 4.048 23 N -0.931 5.931 24 Si 0.960 3.040 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.141 3.859 29 C -0.112 4.112 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.104 0.896 33 H 0.043 0.957 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.417 0.583 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.062 0.938 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.073 0.927 45 H 0.067 0.933 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.003 0.997 49 H 0.248 0.752 50 H 0.054 0.946 51 H 0.021 0.979 52 H 0.063 0.937 53 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.702 -10.267 -15.065 19.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.320 6.320 3 C 0.003 3.997 4 C -0.050 4.050 5 C 0.017 3.983 6 N -0.356 5.356 7 C 0.306 3.694 8 O -0.467 6.467 9 C -0.156 4.156 10 H 0.147 0.853 11 C -0.183 4.183 12 C -0.031 4.031 13 O -0.309 6.309 14 C 0.034 3.966 15 H 0.080 0.920 16 C -0.197 4.197 17 C -0.149 4.149 18 C 0.059 3.941 19 N -0.333 5.333 20 C -0.390 4.390 21 H 0.082 0.918 22 C -0.244 4.244 23 N -0.577 5.577 24 Si 0.789 3.211 25 H -0.193 1.193 26 H -0.220 1.220 27 H -0.219 1.219 28 C 0.015 3.985 29 C -0.151 4.151 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.260 0.740 38 H 0.091 0.909 39 H 0.126 0.874 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.021 0.979 49 H 0.058 0.942 50 H 0.072 0.928 51 H 0.039 0.961 52 H 0.082 0.918 53 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.208 -10.398 -15.642 19.491 hybrid contribution 0.277 0.699 1.731 1.888 sum -4.932 -9.699 -13.910 17.660 Atomic orbital electron populations 1.22868 0.79694 1.03881 1.00145 1.87431 1.21055 1.28124 1.95436 1.22562 0.92283 0.84625 1.00256 1.20653 0.93826 0.96255 0.94250 1.21243 0.97261 0.82871 0.96948 1.46282 1.49854 1.14116 1.25343 1.20576 0.80507 0.86869 0.81453 1.90667 1.39728 1.78675 1.37588 1.22898 1.03354 0.91516 0.97808 0.85313 1.22969 1.03386 0.94769 0.97174 1.23284 1.01257 0.97168 0.81431 1.88864 1.89326 1.27797 1.24867 1.22885 0.99316 0.80384 0.94044 0.92040 1.21719 1.00309 1.02197 0.95426 1.21937 0.99559 0.98466 0.94945 1.20499 0.94585 0.84000 0.94983 1.44316 1.63919 1.08916 1.16188 1.19512 1.14497 1.18438 0.86533 0.91828 1.25705 0.98291 1.01405 0.98980 1.70168 1.26485 1.41914 1.19159 0.85312 0.79290 0.77143 0.79328 1.19319 1.22028 1.21855 1.21072 0.96974 0.94030 0.86386 1.21883 1.00490 0.93867 0.98877 0.94844 0.93160 0.87744 0.93898 0.92114 0.91459 0.92665 0.74010 0.90932 0.87423 0.91984 0.87478 0.91294 0.91409 0.90773 0.91493 0.93712 0.93564 0.97854 0.94242 0.92764 0.96105 0.91827 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.40 -9.73 6.77 -148.98 -1.01 -10.74 16 3 C 0.08 2.15 4.05 71.98 0.29 2.44 16 4 C -0.05 -1.42 0.51 -52.16 -0.03 -1.45 16 5 C 0.14 3.77 4.56 86.38 0.39 4.17 16 6 N -0.70 -17.27 4.55 -463.05 -2.11 -19.38 16 7 C 0.52 13.33 7.05 87.66 0.62 13.95 16 8 O -0.59 -19.07 15.69 -3.04 -0.05 -19.12 16 9 C -0.13 -2.65 2.95 -10.24 -0.03 -2.68 16 10 H 0.13 2.08 8.06 -2.39 -0.02 2.06 16 11 C -0.15 -2.44 6.55 31.59 0.21 -2.23 16 12 C 0.05 0.75 7.70 72.36 0.56 1.31 16 13 O -0.39 -8.46 11.22 -148.98 -1.67 -10.13 16 14 C 0.09 1.99 3.03 31.27 0.09 2.09 16 15 H 0.06 1.58 7.53 -2.39 -0.02 1.56 16 16 C -0.14 -2.62 9.66 71.98 0.69 -1.93 16 17 C -0.11 -3.86 4.59 30.66 0.14 -3.72 16 18 C 0.18 8.41 4.83 86.35 0.42 8.83 16 19 N -0.61 -29.08 2.99 -699.17 -2.09 -31.17 16 20 C -0.26 -13.90 9.58 84.03 0.81 -13.09 16 21 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 22 C -0.05 -2.64 4.92 84.86 0.42 -2.22 16 23 N -0.93 -53.69 11.20 21.65 0.24 -53.45 16 24 Si 0.96 44.30 29.59 68.60 2.03 46.33 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 28 C 0.14 5.35 6.05 86.36 0.52 5.87 16 29 C -0.11 -3.34 4.91 30.67 0.15 -3.19 16 30 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.04 1.42 4.98 -2.39 -0.01 1.41 16 34 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.42 9.76 4.68 -92.71 -0.43 9.33 16 38 H 0.07 1.37 7.85 -2.39 -0.02 1.35 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 42 H 0.07 1.40 8.03 -2.38 -0.02 1.38 16 43 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.07 2.15 6.49 -2.38 -0.02 2.14 16 46 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 47 H 0.05 2.46 6.06 -2.39 -0.01 2.45 16 48 H 0.00 0.17 6.70 -2.39 -0.02 0.15 16 49 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 50 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 51 H 0.02 0.79 6.69 -2.39 -0.02 0.78 16 52 H 0.06 2.00 8.14 -2.39 -0.02 1.99 16 53 H 0.09 2.10 8.14 -2.38 -0.02 2.09 16 Total: -1.00 -66.24 400.46 2.30 -63.94 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 0.45 Total: 23.77 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: 6.50 Total: 9.95 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -3.96 Total: -104.00 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -2.73 Total: -39.99 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -66.24 2.30 -63.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162545689.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.747 kcal (2) G-P(sol) polarization free energy of solvation -66.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds