Wall clock time and date at job start Tue Mar 31 2020 23:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.18215 * 2 1 4 4 C 1.47098 * 109.33202 * 240.43559 * 2 1 3 5 5 C 1.52560 * 114.33402 * 176.92922 * 4 2 1 6 6 C 1.50882 * 109.35049 * 85.01698 * 5 4 2 7 7 C 1.53938 * 110.09785 * 268.11655 * 6 5 4 8 8 N 1.47609 * 112.14724 * 40.56080 * 7 6 5 9 9 C 1.34777 * 118.64453 * 222.12012 * 8 7 6 10 10 O 1.21281 * 119.99873 * 180.02562 * 9 8 7 11 11 C 1.50698 * 119.99959 * 0.02562 * 9 8 7 12 12 H 1.09008 * 109.46817 * 60.00504 * 11 9 8 13 13 C 1.50700 * 109.47486 * 300.00560 * 11 9 8 14 14 H 1.08004 * 119.99918 * 119.99343 * 13 11 9 15 15 C 1.37877 * 119.99906 * 300.00327 * 13 11 9 16 16 N 1.31520 * 119.99868 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 120.00010 * 180.02562 * 15 13 11 18 18 H 1.48494 * 109.47180 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47575 * 119.99634 * 17 15 13 20 20 H 1.48502 * 109.46784 * 239.99323 * 17 15 13 21 21 N 1.46500 * 109.47028 * 180.02562 * 11 9 8 22 22 C 1.34776 * 119.99891 * 205.00346 * 21 11 9 23 23 O 1.21511 * 119.99905 * 0.02562 * 22 21 11 24 24 O 1.34631 * 120.00139 * 179.97438 * 22 21 11 25 25 C 1.45201 * 117.00167 * 179.97438 * 24 22 21 26 26 C 1.52998 * 109.46982 * 60.00216 * 25 24 22 27 27 C 1.53004 * 109.47037 * 180.02562 * 25 24 22 28 28 C 1.52996 * 109.47243 * 299.99950 * 25 24 22 29 29 C 1.44579 * 122.71051 * 42.13795 * 8 7 6 30 30 H 1.08995 * 109.47603 * 300.42933 * 1 2 3 31 31 H 1.08993 * 109.47467 * 60.44120 * 1 2 3 32 32 H 1.09009 * 109.46776 * 180.43748 * 1 2 3 33 33 H 1.09002 * 108.50832 * 298.18773 * 4 2 1 34 34 H 1.08996 * 108.51022 * 55.67243 * 4 2 1 35 35 H 1.09004 * 109.49280 * 325.05892 * 5 4 2 36 36 H 1.08992 * 109.51627 * 204.99969 * 5 4 2 37 37 H 1.08997 * 109.36626 * 147.91889 * 6 5 4 38 38 H 1.09007 * 109.26186 * 28.24164 * 6 5 4 39 39 H 1.09002 * 108.94505 * 279.87570 * 7 6 5 40 40 H 1.09000 * 108.88110 * 161.19754 * 7 6 5 41 41 H 0.96996 * 119.99603 * 180.02562 * 16 15 13 42 42 H 0.96998 * 120.00076 * 24.99808 * 21 11 9 43 43 H 1.08998 * 109.47260 * 60.00354 * 26 25 24 44 44 H 1.09003 * 109.47182 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.47333 * 299.99527 * 26 25 24 46 46 H 1.08999 * 109.47039 * 60.00373 * 27 25 24 47 47 H 1.09003 * 109.46814 * 180.02562 * 27 25 24 48 48 H 1.08998 * 109.47464 * 299.99804 * 27 25 24 49 49 H 1.09003 * 109.46884 * 60.00025 * 28 25 24 50 50 H 1.09003 * 109.47266 * 179.97438 * 28 25 24 51 51 H 1.08999 * 109.47547 * 300.00064 * 28 25 24 52 52 H 1.09002 * 109.44880 * 149.24648 * 29 8 7 53 53 H 1.08994 * 109.45313 * 29.32109 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 6 2.0169 -0.6849 -1.2073 5 6 3.5348 -0.6860 -1.3603 6 6 4.1147 -1.8427 -0.5841 7 6 4.4800 -1.3925 0.8420 8 7 3.4625 -0.4922 1.4191 9 6 3.8741 0.5874 2.1130 10 8 3.0591 1.3433 2.5981 11 6 5.3470 0.8554 2.2860 12 1 5.8112 0.9786 1.3074 13 6 5.9878 -0.3046 3.0035 14 1 6.7805 -0.8627 2.5274 15 6 5.5620 -0.6535 4.2676 16 7 4.5969 0.0263 4.8474 17 14 6.3568 -2.0909 5.1573 18 1 7.4102 -2.6851 4.2956 19 1 6.9649 -1.6134 6.4251 20 1 5.3267 -3.1174 5.4583 21 7 5.5319 2.0777 3.0721 22 6 6.6665 2.7942 2.9468 23 8 7.5358 2.4266 2.1815 24 8 6.8363 3.9178 3.6689 25 6 8.0831 4.6385 3.4834 26 6 8.2118 5.0667 2.0203 27 6 8.0943 5.8776 4.3809 28 6 9.2572 3.7303 3.8542 29 6 2.0426 -0.7210 1.2711 30 1 -0.3634 0.5204 0.8860 31 1 -0.3634 0.5069 -0.8938 32 1 -0.3633 -1.0277 0.0078 33 1 1.6708 -1.7182 -1.1824 34 1 1.5815 -0.1988 -2.0803 35 1 3.9400 0.2498 -0.9753 36 1 3.7945 -0.7885 -2.4139 37 1 5.0100 -2.2045 -1.0895 38 1 3.3793 -2.6457 -0.5324 39 1 5.4377 -0.8728 0.8145 40 1 4.5738 -2.2736 1.4768 41 1 4.2976 -0.2189 5.7368 42 1 4.8378 2.3713 3.6827 43 1 7.3754 5.7139 1.7562 44 1 9.1480 5.6074 1.8809 45 1 8.2041 4.1838 1.3812 46 1 8.0028 5.5720 5.4232 47 1 9.0301 6.4188 4.2414 48 1 7.2579 6.5248 4.1173 49 1 9.2494 2.8473 3.2151 50 1 10.1932 4.2711 3.7145 51 1 9.1655 3.4251 4.8966 52 1 1.5194 -0.3323 2.1448 53 1 1.8547 -1.7909 1.1821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180778718.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:25:53 Heat of formation + Delta-G solvation = -148.244345 kcal Electronic energy + Delta-G solvation = -32829.523350 eV Core-core repulsion = 28700.132734 eV Total energy + Delta-G solvation = -4129.390616 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.61760 -41.05643 -38.83331 -37.83760 -35.94865 -35.28095 -34.85690 -33.99766 -33.66247 -30.09561 -28.91593 -28.28161 -28.22752 -27.06650 -25.53557 -25.04207 -23.03558 -21.94785 -21.10730 -20.86649 -19.83998 -19.09180 -18.72343 -17.55272 -17.13299 -17.01897 -16.96662 -16.67440 -16.11891 -15.69963 -15.42519 -15.36146 -15.23985 -15.01580 -14.57805 -14.40311 -14.29657 -13.95930 -13.88405 -13.37237 -13.28238 -13.22169 -13.12222 -12.91313 -12.78294 -12.76575 -12.76073 -12.74471 -12.50071 -12.38819 -12.20939 -12.13558 -12.03620 -11.82285 -11.68630 -11.46366 -11.27374 -11.22562 -11.16679 -10.99790 -10.77305 -10.29113 -9.60643 -9.24506 -8.20886 -6.38770 1.33374 1.40510 1.50353 1.52892 2.13020 2.15543 2.38299 2.52450 3.08583 3.66362 3.78680 3.86932 3.89469 3.91341 4.02958 4.04415 4.15967 4.25995 4.34485 4.52123 4.57009 4.62460 4.66086 4.67206 4.74407 4.79357 4.80733 4.85039 4.85715 4.90695 4.93849 4.95782 5.00391 5.09944 5.13605 5.19524 5.27103 5.28831 5.37713 5.39211 5.42712 5.44111 5.52728 5.56838 5.60787 5.66518 5.81223 5.96104 6.12182 6.56169 6.74139 6.94933 7.32413 7.66593 7.78444 8.80717 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010739 B = 0.004289 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.573643 B = 6527.001199 C = 7765.750537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 H 0.036 0.964 4 C -0.106 4.106 5 C -0.115 4.115 6 C -0.125 4.125 7 C 0.118 3.882 8 N -0.597 5.597 9 C 0.538 3.462 10 O -0.587 6.587 11 C 0.268 3.732 12 H 0.058 0.942 13 C -0.533 4.533 14 H 0.069 0.931 15 C 0.039 3.961 16 N -0.882 5.882 17 Si 0.951 3.049 18 H -0.261 1.261 19 H -0.290 1.290 20 H -0.278 1.278 21 N -0.670 5.670 22 C 0.644 3.356 23 O -0.602 6.602 24 O -0.385 6.385 25 C 0.118 3.882 26 C -0.174 4.174 27 C -0.132 4.132 28 C -0.176 4.176 29 C 0.128 3.872 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.054 0.946 41 H 0.263 0.737 42 H 0.397 0.603 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.109 0.891 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.097 0.903 51 H 0.049 0.951 52 H 0.045 0.955 53 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.122 1.073 -9.085 9.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.120 4.120 3 H 0.054 0.946 4 C -0.143 4.143 5 C -0.152 4.152 6 C -0.163 4.163 7 C -0.004 4.004 8 N -0.328 5.328 9 C 0.327 3.673 10 O -0.468 6.468 11 C 0.163 3.837 12 H 0.076 0.924 13 C -0.572 4.572 14 H 0.087 0.913 15 C -0.166 4.166 16 N -0.518 5.518 17 Si 0.777 3.223 18 H -0.184 1.184 19 H -0.216 1.216 20 H -0.203 1.203 21 N -0.326 5.326 22 C 0.397 3.603 23 O -0.495 6.495 24 O -0.300 6.300 25 C 0.081 3.919 26 C -0.231 4.231 27 C -0.189 4.189 28 C -0.233 4.233 29 C 0.004 3.996 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.232 0.768 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.127 0.873 48 H 0.086 0.914 49 H 0.076 0.924 50 H 0.116 0.884 51 H 0.068 0.932 52 H 0.064 0.936 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.222 1.313 -9.055 9.152 hybrid contribution 0.072 -0.500 1.431 1.518 sum -0.149 0.813 -7.623 7.668 Atomic orbital electron populations 1.21725 0.93223 1.02679 1.01733 1.20698 0.96936 0.98728 0.95615 0.94577 1.20463 0.95477 1.01563 0.96796 1.21047 0.95730 0.98015 1.00442 1.21831 1.02583 0.98384 0.93464 1.22038 0.90790 0.93376 0.94189 1.47298 1.06462 1.25663 1.53411 1.20958 0.91179 0.79935 0.75191 1.90475 1.56840 1.49314 1.50155 1.18311 0.90249 0.83194 0.91927 0.92398 1.21275 1.20482 1.13702 1.01717 0.91272 1.25684 0.94540 0.98474 0.97879 1.70075 1.26929 1.39935 1.14815 0.85603 0.78786 0.79543 0.78398 1.18448 1.21619 1.20327 1.45138 1.16975 1.25116 1.45355 1.18112 0.83247 0.79420 0.79567 1.90744 1.43139 1.72784 1.42850 1.86311 1.43348 1.36530 1.63818 1.22416 0.80202 0.91721 0.97530 1.22425 1.03424 1.02312 0.94954 1.21860 1.04420 0.93949 0.98655 1.22432 0.98403 1.01069 1.01424 1.21382 0.80704 1.00236 0.97242 0.93951 0.91349 0.90979 0.90561 0.91464 0.94705 0.90033 0.89124 0.90296 0.90645 0.92717 0.92768 0.76774 0.92327 0.88482 0.92305 0.91977 0.87255 0.91396 0.92378 0.88424 0.93163 0.93597 0.89547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.16 9.10 71.98 0.66 -2.51 16 2 C -0.10 -2.87 2.61 -11.99 -0.03 -2.90 16 3 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.11 -2.40 4.38 28.61 0.13 -2.27 16 5 C -0.11 -2.80 5.51 29.76 0.16 -2.63 16 6 C -0.12 -3.00 5.71 30.22 0.17 -2.83 16 7 C 0.12 4.04 4.93 86.48 0.43 4.46 16 8 N -0.60 -23.78 2.24 -818.18 -1.83 -25.61 16 9 C 0.54 26.23 5.87 87.66 0.51 26.75 16 10 O -0.59 -32.01 15.22 -3.03 -0.05 -32.06 16 11 C 0.27 13.48 1.76 43.50 0.08 13.56 16 12 H 0.06 2.94 6.85 -2.38 -0.02 2.92 16 13 C -0.53 -27.42 6.61 25.60 0.17 -27.25 16 14 H 0.07 3.53 7.64 -2.91 -0.02 3.50 16 15 C 0.04 2.04 5.23 84.65 0.44 2.48 16 16 N -0.88 -48.81 11.58 21.45 0.25 -48.56 16 17 Si 0.95 42.05 29.54 68.60 2.03 44.08 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 N -0.67 -34.64 4.36 -577.36 -2.52 -37.16 16 22 C 0.64 31.49 8.01 129.79 1.04 32.53 16 23 O -0.60 -30.23 11.54 19.81 0.23 -30.00 16 24 O -0.38 -16.60 9.94 -55.40 -0.55 -17.15 16 25 C 0.12 3.87 1.13 -10.79 -0.01 3.85 16 26 C -0.17 -5.25 8.37 71.98 0.60 -4.65 16 27 C -0.13 -3.16 8.85 71.98 0.64 -2.52 16 28 C -0.18 -5.73 8.37 71.98 0.60 -5.12 16 29 C 0.13 4.41 4.70 87.38 0.41 4.82 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.46 7.36 -2.39 -0.02 1.44 16 34 H 0.07 1.34 8.11 -2.39 -0.02 1.32 16 35 H 0.03 1.07 7.48 -2.38 -0.02 1.06 16 36 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.08 1.63 7.31 -2.38 -0.02 1.61 16 39 H 0.08 2.87 5.03 -2.39 -0.01 2.86 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.40 21.74 7.58 -92.71 -0.70 21.04 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.06 2.17 5.88 -2.39 -0.01 2.16 16 46 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.06 2.31 5.88 -2.39 -0.01 2.30 16 50 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 51 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.05 1.87 7.27 -2.39 -0.02 1.86 16 53 H 0.09 2.51 8.07 -2.39 -0.02 2.49 16 Total: -1.00 -67.40 403.64 3.74 -63.65 By element: Atomic # 1 Polarization: 46.84 SS G_CDS: 0.19 Total: 47.02 kcal Atomic # 6 Polarization: 29.78 SS G_CDS: 6.00 Total: 35.78 kcal Atomic # 7 Polarization: -107.23 SS G_CDS: -4.10 Total: -111.33 kcal Atomic # 8 Polarization: -78.84 SS G_CDS: -0.37 Total: -79.21 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -67.40 3.74 -63.65 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778718.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.590 kcal (2) G-P(sol) polarization free energy of solvation -67.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds