Wall clock time and date at job start Wed Apr 1 2020 00:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.30687 * 2 1 4 4 C 1.54389 * 110.34301 * 237.82068 * 2 1 3 5 5 N 1.48146 * 104.71947 * 217.10300 * 4 2 1 6 6 C 1.34781 * 127.83592 * 219.64451 * 5 4 2 7 7 O 1.21280 * 120.00372 * 180.02562 * 6 5 4 8 8 C 1.50707 * 119.99767 * 0.02562 * 6 5 4 9 9 O 1.42909 * 109.46839 * 180.02562 * 8 6 5 10 10 C 1.42895 * 113.99635 * 180.02562 * 9 8 6 11 11 C 1.53005 * 109.46855 * 180.02562 * 10 9 8 12 12 H 1.09001 * 110.43423 * 303.91060 * 11 10 9 13 13 C 1.54804 * 110.48899 * 181.21796 * 11 10 9 14 14 C 1.54992 * 102.09587 * 220.44393 * 13 11 10 15 15 O 1.44377 * 103.48968 * 37.02444 * 14 13 11 16 16 C 1.43744 * 106.97436 * 319.93960 * 15 14 13 17 17 C 1.48427 * 104.18376 * 39.57151 * 5 4 2 18 18 C 1.54289 * 110.42949 * 122.23129 * 2 1 3 19 19 C 1.53002 * 110.34289 * 0.04696 * 18 2 1 20 20 C 1.52999 * 110.34438 * 237.88917 * 18 2 1 21 21 N 1.46493 * 109.47026 * 180.02562 * 20 18 2 22 22 C 1.36941 * 120.00100 * 180.02562 * 21 20 18 23 23 H 1.08002 * 119.99830 * 359.97438 * 22 21 20 24 24 C 1.38806 * 120.00216 * 180.02562 * 22 21 20 25 25 N 1.31620 * 119.99923 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 120.00023 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47196 * 89.99668 * 26 24 22 28 28 H 1.48504 * 109.47135 * 209.99811 * 26 24 22 29 29 H 1.48500 * 109.47031 * 329.99583 * 26 24 22 30 30 H 1.08988 * 109.47427 * 180.72123 * 1 2 3 31 31 H 1.09000 * 109.47013 * 300.72719 * 1 2 3 32 32 H 1.09007 * 109.46933 * 60.72032 * 1 2 3 33 33 H 1.09002 * 110.40709 * 335.94598 * 4 2 1 34 34 H 1.09002 * 110.40588 * 98.25959 * 4 2 1 35 35 H 1.09000 * 109.47185 * 299.99787 * 8 6 5 36 36 H 1.08994 * 109.47044 * 60.00591 * 8 6 5 37 37 H 1.09002 * 109.47044 * 299.99725 * 10 9 8 38 38 H 1.08994 * 109.47230 * 60.00346 * 10 9 8 39 39 H 1.08999 * 110.90960 * 338.64406 * 13 11 10 40 40 H 1.09008 * 110.90825 * 102.24236 * 13 11 10 41 41 H 1.09000 * 110.61375 * 278.52251 * 14 13 11 42 42 H 1.08999 * 110.62238 * 155.52637 * 14 13 11 43 43 H 1.09002 * 109.88229 * 267.09016 * 16 15 14 44 44 H 1.09001 * 110.00381 * 146.00661 * 16 15 14 45 45 H 1.09004 * 110.39413 * 201.64938 * 17 5 4 46 46 H 1.09006 * 110.49084 * 79.28969 * 17 5 4 47 47 H 1.08998 * 109.46918 * 59.99571 * 19 18 2 48 48 H 1.08996 * 109.47141 * 179.97438 * 19 18 2 49 49 H 1.08996 * 109.46540 * 299.99665 * 19 18 2 50 50 H 1.09001 * 109.47281 * 300.00168 * 20 18 2 51 51 H 1.08995 * 109.46710 * 60.00176 * 20 18 2 52 52 H 0.96999 * 120.00353 * 0.02562 * 21 20 18 53 53 H 0.97004 * 119.99540 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0667 -0.7709 -1.2252 5 7 3.2690 -1.4789 -0.7274 6 6 4.4440 -1.6600 -1.3624 7 8 5.3407 -2.2678 -0.8171 8 6 4.6436 -1.1071 -2.7501 9 8 5.9597 -1.4273 -3.2056 10 6 6.2534 -0.9457 -4.5185 11 6 7.6803 -1.3445 -4.9007 12 1 8.3899 -0.9757 -4.1599 13 6 8.0343 -0.8076 -6.3088 14 6 8.8185 -1.9957 -6.9217 15 8 8.1268 -3.1553 -6.4105 16 6 7.7934 -2.8750 -5.0407 17 6 2.8835 -1.9405 0.6296 18 6 2.0685 -0.7711 1.2230 19 6 0.9098 -1.3050 2.0676 20 6 2.9688 0.1328 2.0676 21 7 3.4694 -0.6177 3.2218 22 6 4.2999 -0.0103 4.1256 23 1 4.5860 1.0219 3.9872 24 6 4.7747 -0.7215 5.2189 25 7 4.4263 -1.9796 5.3873 26 14 5.9080 0.1068 6.4513 27 1 5.0972 0.7341 7.5257 28 1 6.8181 -0.9054 7.0450 29 1 6.7098 1.1501 5.7630 30 1 -0.3633 -1.0274 0.0129 31 1 -0.3633 0.5251 0.8834 32 1 -0.3633 0.5026 -0.8964 33 1 1.3241 -1.4859 -1.5796 34 1 2.3364 -0.0778 -2.0221 35 1 3.9090 -1.5462 -3.4252 36 1 4.5186 -0.0246 -2.7313 37 1 5.5520 -1.3807 -5.2305 38 1 6.1624 0.1403 -4.5360 39 1 7.1321 -0.5990 -6.8837 40 1 8.6638 0.0798 -6.2398 41 1 9.8547 -1.9868 -6.5837 42 1 8.7686 -1.9679 -8.0102 43 1 8.5782 -3.2503 -4.3839 44 1 6.8420 -3.3418 -4.7855 45 1 3.7714 -2.1297 1.2330 46 1 2.2691 -2.8387 0.5669 47 1 0.2998 -1.9770 1.4640 48 1 1.3058 -1.8470 2.9264 49 1 0.2986 -0.4717 2.4138 50 1 3.8098 0.4742 1.4640 51 1 2.3969 0.9937 2.4138 52 1 3.2127 -1.5448 3.3459 53 1 4.7579 -2.4765 6.1516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182795997.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:11 Heat of formation + Delta-G solvation = -135.074916 kcal Electronic energy + Delta-G solvation = -30587.033084 eV Core-core repulsion = 26458.213537 eV Total energy + Delta-G solvation = -4128.819547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.46498 -40.57471 -39.68639 -38.27130 -36.50130 -34.70061 -33.90716 -33.15483 -31.30920 -30.66300 -29.58871 -27.98484 -26.95863 -26.66082 -26.02511 -25.07053 -23.40452 -22.47185 -21.61030 -20.51174 -19.74312 -19.13922 -18.34255 -17.84728 -17.47557 -17.24483 -16.83823 -16.71627 -16.60137 -16.30421 -15.92494 -15.90965 -15.31915 -15.15077 -15.08025 -14.61842 -14.55007 -14.29657 -13.99328 -13.79601 -13.39106 -13.26074 -13.06366 -12.97810 -12.90187 -12.78946 -12.66066 -12.62820 -12.60088 -12.30048 -12.18082 -12.10626 -12.06984 -11.97394 -11.63896 -11.59960 -11.26697 -11.16127 -10.97578 -10.87011 -10.76495 -10.63452 -9.76584 -9.01179 -7.98042 -5.25934 1.41540 1.44758 1.52631 1.53076 1.62796 2.52584 2.76825 2.99486 3.34345 3.39563 3.54081 3.59201 3.70051 3.79743 3.83376 3.91214 4.10550 4.17372 4.20321 4.23037 4.25672 4.32548 4.35106 4.35833 4.41493 4.50336 4.58820 4.66596 4.67326 4.73128 4.79169 4.82662 4.84986 4.86576 4.87927 4.91258 5.00841 5.01634 5.06471 5.14809 5.15956 5.22051 5.32410 5.41644 5.46463 5.48462 5.69231 5.86479 6.07026 6.24589 6.56273 7.12309 7.30737 8.07866 8.30579 9.25650 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010547 B = 0.002516 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.226236 B =11126.061540 C =13048.827258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.091 4.091 3 H 0.082 0.918 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.517 3.483 7 O -0.587 6.587 8 C 0.061 3.939 9 O -0.401 6.401 10 C 0.068 3.932 11 C -0.124 4.124 12 H 0.083 0.917 13 C -0.136 4.136 14 C 0.037 3.963 15 O -0.404 6.404 16 C 0.052 3.948 17 C 0.115 3.885 18 C -0.068 4.068 19 C -0.126 4.126 20 C 0.169 3.831 21 N -0.740 5.740 22 C -0.245 4.245 23 H 0.071 0.929 24 C -0.077 4.077 25 N -0.969 5.969 26 Si 0.973 3.027 27 H -0.280 1.280 28 H -0.296 1.296 29 H -0.273 1.273 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.113 0.887 43 H 0.048 0.952 44 H 0.078 0.922 45 H 0.037 0.963 46 H 0.082 0.918 47 H 0.084 0.916 48 H 0.028 0.972 49 H 0.069 0.931 50 H -0.003 1.003 51 H 0.026 0.974 52 H 0.375 0.625 53 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.265 6.464 -29.100 30.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.101 0.899 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.307 3.693 7 O -0.466 6.466 8 C -0.017 4.017 9 O -0.320 6.320 10 C -0.008 4.008 11 C -0.142 4.142 12 H 0.102 0.898 13 C -0.173 4.173 14 C -0.039 4.039 15 O -0.324 6.324 16 C -0.025 4.025 17 C -0.008 4.008 18 C -0.070 4.070 19 C -0.184 4.184 20 C 0.042 3.958 21 N -0.383 5.383 22 C -0.377 4.377 23 H 0.088 0.912 24 C -0.269 4.269 25 N -0.619 5.619 26 Si 0.802 3.198 27 H -0.207 1.207 28 H -0.223 1.223 29 H -0.199 1.199 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.127 0.873 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.131 0.869 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.047 0.953 49 H 0.088 0.912 50 H 0.015 0.985 51 H 0.044 0.956 52 H 0.208 0.792 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.492 5.980 -28.839 29.960 hybrid contribution 1.035 -0.109 1.702 1.995 sum -4.457 5.871 -27.137 28.120 Atomic orbital electron populations 1.21863 0.91529 1.03073 1.02907 1.22148 0.98045 0.99078 0.91749 0.89949 1.22898 0.85554 0.96316 0.97101 1.49043 1.13428 1.55791 1.17197 1.20837 0.80275 0.79669 0.88542 1.90749 1.42891 1.43875 1.69092 1.22222 0.86756 1.01787 0.90981 1.87991 1.30968 1.79229 1.33837 1.22767 0.95694 0.99569 0.82731 1.22568 0.97147 0.95310 0.99213 0.89808 1.23134 1.02150 0.99187 0.92878 1.23806 0.95882 0.83516 1.00707 1.88851 1.77105 1.40426 1.25995 1.23153 1.00635 0.95645 0.83072 1.22414 0.98203 0.97253 0.82895 1.21613 0.95094 0.94602 0.95653 1.21820 0.96463 1.01399 0.98700 1.20792 0.93830 0.93750 0.87427 1.42591 1.57148 1.12691 1.25904 1.19591 1.20354 0.95760 1.02006 0.91152 1.25574 1.03232 0.96808 1.01294 1.69817 1.50678 1.09795 1.31638 0.85145 0.78408 0.77139 0.79115 1.20707 1.22277 1.19852 0.91269 0.92383 0.90120 0.87992 0.87103 0.86651 0.87330 0.91027 0.90427 0.88694 0.87856 0.91753 0.86926 0.93361 0.90358 0.94422 0.89989 0.89715 0.95289 0.91189 0.98475 0.95586 0.79162 0.94024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.93 71.98 0.57 -1.23 16 2 C -0.09 -1.75 3.30 -9.89 -0.03 -1.78 16 3 H 0.08 1.63 7.71 -2.39 -0.02 1.61 16 4 C 0.10 1.63 6.45 86.53 0.56 2.19 16 5 N -0.62 -17.57 3.33 -807.17 -2.69 -20.25 16 6 C 0.52 17.02 8.00 87.66 0.70 17.72 16 7 O -0.59 -27.49 16.78 16.01 0.27 -27.22 16 8 C 0.06 1.26 5.40 71.24 0.38 1.64 16 9 O -0.40 -10.20 9.62 -129.94 -1.25 -11.45 16 10 C 0.07 1.06 5.03 71.98 0.36 1.42 16 11 C -0.12 -2.06 3.34 -9.80 -0.03 -2.09 16 12 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.14 -1.38 6.71 31.89 0.21 -1.17 16 14 C 0.04 0.48 7.72 72.66 0.56 1.04 16 15 O -0.40 -8.66 11.52 -148.98 -1.72 -10.37 16 16 C 0.05 1.11 7.23 72.35 0.52 1.64 16 17 C 0.12 3.98 5.93 86.48 0.51 4.50 16 18 C -0.07 -2.07 0.74 -51.27 -0.04 -2.11 16 19 C -0.13 -3.59 7.11 71.98 0.51 -3.08 16 20 C 0.17 7.01 4.95 86.38 0.43 7.44 16 21 N -0.74 -39.62 4.79 -343.47 -1.64 -41.27 16 22 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 23 H 0.07 4.04 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 25 N -0.97 -62.29 13.06 21.65 0.28 -62.01 16 26 Si 0.97 48.73 29.55 68.60 2.03 50.76 16 27 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 28 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 29 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 30 H 0.07 0.84 6.62 -2.39 -0.02 0.82 16 31 H 0.06 0.88 6.99 -2.39 -0.02 0.86 16 32 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.10 1.14 7.86 -2.39 -0.02 1.12 16 34 H 0.11 1.01 7.30 -2.39 -0.02 1.00 16 35 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.11 1.54 7.95 -2.39 -0.02 1.52 16 37 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 0.71 7.87 -2.39 -0.02 0.69 16 40 H 0.10 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.08 1.83 7.60 -2.39 -0.02 1.81 16 45 H 0.04 1.77 6.95 -2.38 -0.02 1.75 16 46 H 0.08 2.53 7.83 -2.38 -0.02 2.51 16 47 H 0.08 1.82 6.68 -2.39 -0.02 1.80 16 48 H 0.03 1.05 6.75 -2.39 -0.02 1.03 16 49 H 0.07 1.84 6.89 -2.39 -0.02 1.82 16 50 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 51 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.38 21.27 5.99 -92.71 -0.55 20.72 16 53 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -87.51 411.98 2.14 -85.36 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.33 Total: 28.23 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.53 Total: 8.22 kcal Atomic # 7 Polarization: -119.48 SS G_CDS: -4.05 Total: -123.53 kcal Atomic # 8 Polarization: -46.34 SS G_CDS: -2.70 Total: -49.04 kcal Atomic # 14 Polarization: 48.73 SS G_CDS: 2.03 Total: 50.76 kcal Total: -87.51 2.14 -85.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182795997.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.712 kcal (2) G-P(sol) polarization free energy of solvation -87.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds