Wall clock time and date at job start Wed Apr 1 2020 00:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.30684 * 2 1 4 4 C 1.54394 * 110.33910 * 237.82966 * 2 1 3 5 5 N 1.48145 * 104.61891 * 217.15506 * 4 2 1 6 6 C 1.34774 * 127.83908 * 219.59066 * 5 4 2 7 7 O 1.21285 * 119.99889 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00220 * 0.02562 * 6 5 4 9 9 O 1.42897 * 109.47306 * 180.02562 * 8 6 5 10 10 C 1.42897 * 113.99940 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46999 * 179.97438 * 10 9 8 12 12 H 1.09002 * 110.27448 * 54.30219 * 11 10 9 13 13 C 1.54945 * 110.39100 * 176.44811 * 11 10 9 14 14 C 1.55304 * 100.94045 * 155.40253 * 13 11 10 15 15 C 1.54376 * 102.25567 * 325.86882 * 14 13 11 16 16 O 1.43240 * 107.58930 * 21.35352 * 15 14 13 17 17 C 1.48142 * 104.32163 * 39.84718 * 5 4 2 18 18 C 1.54281 * 110.43373 * 122.24665 * 2 1 3 19 19 C 1.53002 * 110.34150 * 359.93253 * 18 2 1 20 20 C 1.53004 * 110.33702 * 237.78423 * 18 2 1 21 21 N 1.46505 * 109.46929 * 179.97438 * 20 18 2 22 22 C 1.36937 * 120.00245 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99963 * 0.02562 * 22 21 20 24 24 C 1.38813 * 120.00227 * 180.02562 * 22 21 20 25 25 N 1.31619 * 119.99864 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99902 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47104 * 90.00330 * 26 24 22 28 28 H 1.48499 * 109.47154 * 210.00242 * 26 24 22 29 29 H 1.48500 * 109.47080 * 330.00398 * 26 24 22 30 30 H 1.09001 * 109.47350 * 180.71941 * 1 2 3 31 31 H 1.09002 * 109.46699 * 300.71337 * 1 2 3 32 32 H 1.08995 * 109.47435 * 60.70974 * 1 2 3 33 33 H 1.09006 * 110.40353 * 98.37087 * 4 2 1 34 34 H 1.09001 * 110.50991 * 335.99415 * 4 2 1 35 35 H 1.08996 * 109.46754 * 60.00139 * 8 6 5 36 36 H 1.09004 * 109.46855 * 300.00124 * 8 6 5 37 37 H 1.09005 * 109.47084 * 60.00528 * 10 9 8 38 38 H 1.08997 * 109.47384 * 300.00218 * 10 9 8 39 39 H 1.08997 * 111.12470 * 273.31972 * 13 11 10 40 40 H 1.08995 * 111.12619 * 37.48960 * 13 11 10 41 41 H 1.08998 * 110.85543 * 207.67443 * 14 13 11 42 42 H 1.09010 * 110.84919 * 84.05659 * 14 13 11 43 43 H 1.08999 * 109.83271 * 261.84174 * 15 14 13 44 44 H 1.08999 * 109.91049 * 140.90833 * 15 14 13 45 45 H 1.09004 * 110.40841 * 78.93766 * 17 5 4 46 46 H 1.08997 * 110.40979 * 201.36513 * 17 5 4 47 47 H 1.08995 * 109.47087 * 60.00787 * 19 18 2 48 48 H 1.08998 * 109.46950 * 180.02562 * 19 18 2 49 49 H 1.08990 * 109.47238 * 300.00319 * 19 18 2 50 50 H 1.08994 * 109.47258 * 299.99552 * 20 18 2 51 51 H 1.08994 * 109.47509 * 60.00326 * 20 18 2 52 52 H 0.97002 * 120.00059 * 0.02562 * 21 20 18 53 53 H 0.97004 * 119.99338 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9083 1.0222 0.0000 4 6 2.0666 -0.7708 -1.2254 5 7 3.2678 -1.4789 -0.7251 6 6 4.4435 -1.6616 -1.3582 7 8 5.3390 -2.2693 -0.8107 8 6 4.6454 -1.1107 -2.7463 9 8 5.9619 -1.4323 -3.1996 10 6 6.2574 -0.9536 -4.5132 11 6 7.6850 -1.3527 -4.8923 12 1 7.8191 -2.4285 -4.7792 13 6 7.9977 -0.9218 -6.3473 14 6 9.5458 -0.8095 -6.2953 15 6 9.7898 -0.3092 -4.8553 16 8 8.6335 -0.6438 -4.0790 17 6 2.8814 -1.9461 0.6266 18 6 2.0686 -0.7714 1.2227 19 6 0.9100 -1.3031 2.0688 20 6 2.9710 0.1318 2.0660 21 7 3.4708 -0.6185 3.2208 22 6 4.3036 -0.0122 4.1230 23 1 4.5917 1.0193 3.9835 24 6 4.7777 -0.7233 5.2168 25 7 5.5777 -0.1403 6.0842 26 14 4.2789 -2.5072 5.4585 27 1 5.2562 -3.3915 4.7743 28 1 4.2570 -2.8228 6.9094 29 1 2.9271 -2.7254 4.8840 30 1 -0.3634 -1.0276 0.0129 31 1 -0.3633 0.5249 0.8836 32 1 -0.3634 0.5027 -0.8962 33 1 2.3382 -0.0774 -2.0215 34 1 1.3249 -1.4856 -1.5818 35 1 4.5211 -0.0280 -2.7291 36 1 3.9115 -1.5501 -3.4219 37 1 6.1668 0.1325 -4.5330 38 1 5.5566 -1.3897 -5.2251 39 1 7.6829 -1.6847 -7.0593 40 1 7.5417 0.0408 -6.5786 41 1 9.9070 -0.0842 -7.0243 42 1 10.0109 -1.7829 -6.4517 43 1 9.9330 0.7713 -4.8585 44 1 10.6700 -0.7974 -4.4369 45 1 2.2640 -2.8418 0.5570 46 1 3.7683 -2.1407 1.2295 47 1 0.2984 -1.9746 1.4662 48 1 1.3060 -1.8446 2.9279 49 1 0.3002 -0.4688 2.4152 50 1 3.8118 0.4716 1.4615 51 1 2.4007 0.9936 2.4124 52 1 3.2124 -1.5451 3.3459 53 1 5.9086 -0.6372 6.8488 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001183640055.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:03 Heat of formation + Delta-G solvation = -132.080629 kcal Electronic energy + Delta-G solvation = -30701.577758 eV Core-core repulsion = 26572.888054 eV Total energy + Delta-G solvation = -4128.689705 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.50037 -40.53763 -39.71276 -38.20999 -36.66527 -34.72601 -33.42379 -33.19178 -31.98782 -31.47709 -29.66391 -28.19594 -26.93550 -26.65976 -25.85030 -24.77315 -22.58296 -22.47638 -22.25386 -20.56004 -20.19013 -19.30140 -18.42295 -18.06838 -17.43990 -17.25816 -16.89063 -16.63411 -16.60336 -16.33320 -16.12954 -15.72090 -15.37383 -15.12737 -14.87557 -14.76310 -14.60484 -14.30967 -14.11545 -13.91629 -13.59341 -13.23205 -13.11678 -13.05734 -12.97298 -12.83246 -12.67336 -12.65973 -12.62450 -12.27580 -12.20948 -12.17251 -12.13299 -11.91207 -11.70244 -11.62506 -11.34407 -11.19056 -11.05138 -10.88763 -10.74810 -10.51587 -9.78076 -9.34115 -8.08553 -5.40940 1.27920 1.35816 1.40215 1.50902 1.63060 2.42290 2.74130 2.89955 3.22659 3.33311 3.51354 3.54456 3.62845 3.75677 3.91414 3.92691 3.96087 4.07932 4.11867 4.19056 4.22612 4.26004 4.31165 4.37028 4.38518 4.49235 4.57254 4.58541 4.65700 4.70365 4.76805 4.79439 4.84792 4.86693 4.89755 4.95560 4.98552 4.99237 5.02644 5.11859 5.20694 5.22669 5.31329 5.39972 5.45546 5.66792 5.69504 6.00096 6.15917 6.17419 6.53262 7.02453 7.11040 7.78798 7.97641 9.13498 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.010713 B = 0.002702 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.094421 B =10360.572297 C =12201.254953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 H 0.079 0.921 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.517 3.483 7 O -0.587 6.587 8 C 0.059 3.941 9 O -0.401 6.401 10 C 0.059 3.941 11 C 0.068 3.932 12 H 0.064 0.936 13 C -0.136 4.136 14 C -0.148 4.148 15 C 0.034 3.966 16 O -0.413 6.413 17 C 0.109 3.891 18 C -0.073 4.073 19 C -0.132 4.132 20 C 0.171 3.829 21 N -0.753 5.753 22 C -0.234 4.234 23 H 0.052 0.948 24 C -0.064 4.064 25 N -0.984 5.984 26 Si 0.950 3.050 27 H -0.290 1.290 28 H -0.287 1.287 29 H -0.243 1.243 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.066 0.934 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.093 0.907 46 H 0.039 0.961 47 H 0.091 0.909 48 H 0.031 0.969 49 H 0.072 0.928 50 H 0.000 1.000 51 H 0.032 0.968 52 H 0.366 0.634 53 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 -1.218 -34.055 35.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.097 0.903 4 C -0.018 4.018 5 N -0.355 5.355 6 C 0.307 3.693 7 O -0.466 6.466 8 C -0.020 4.020 9 O -0.321 6.321 10 C -0.017 4.017 11 C 0.011 3.989 12 H 0.082 0.918 13 C -0.173 4.173 14 C -0.186 4.186 15 C -0.042 4.042 16 O -0.333 6.333 17 C -0.014 4.014 18 C -0.074 4.074 19 C -0.189 4.189 20 C 0.045 3.955 21 N -0.400 5.400 22 C -0.365 4.365 23 H 0.070 0.930 24 C -0.256 4.256 25 N -0.634 5.634 26 Si 0.776 3.224 27 H -0.217 1.217 28 H -0.213 1.213 29 H -0.167 1.167 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.120 0.880 36 H 0.140 0.860 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.124 0.876 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.111 0.889 46 H 0.058 0.942 47 H 0.109 0.891 48 H 0.051 0.949 49 H 0.091 0.909 50 H 0.018 0.982 51 H 0.050 0.950 52 H 0.200 0.800 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.322 -1.419 -33.445 34.749 hybrid contribution 0.839 -0.757 1.140 1.605 sum -8.483 -2.176 -32.305 33.471 Atomic orbital electron populations 1.21868 0.91262 1.03274 1.02927 1.22140 0.98211 0.99000 0.91739 0.90291 1.22919 0.85516 0.96350 0.97024 1.48958 1.13358 1.55750 1.17415 1.20815 0.80310 0.79605 0.88575 1.90750 1.42981 1.43927 1.68961 1.22250 0.86793 1.01561 0.91355 1.88054 1.31080 1.78898 1.34023 1.22986 0.95528 0.99683 0.83508 1.23237 0.88082 0.96394 0.91177 0.91806 1.23238 0.95961 1.04233 0.93875 1.23126 0.96131 1.03420 0.95875 1.23359 0.88260 1.00681 0.91928 1.88554 1.30141 1.76462 1.38184 1.22564 0.98310 0.97431 0.83143 1.21758 0.95218 0.94646 0.95796 1.21901 0.96474 1.01794 0.98744 1.20788 0.94070 0.93874 0.86796 1.42735 1.57844 1.12183 1.27201 1.19021 1.19562 0.96223 1.01660 0.92976 1.25503 1.00061 1.02670 0.97346 1.69883 1.39308 1.38333 1.15902 0.85491 0.79368 0.80421 0.77073 1.21664 1.21302 1.16712 0.90851 0.92332 0.90274 0.87428 0.87470 0.88006 0.85965 0.91528 0.88102 0.87153 0.88681 0.87581 0.89880 0.90735 0.91941 0.88908 0.94196 0.89057 0.94942 0.90880 0.98231 0.95043 0.80019 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 7.93 71.98 0.57 -1.01 16 2 C -0.09 -1.66 3.30 -9.89 -0.03 -1.69 16 3 H 0.08 1.56 7.71 -2.39 -0.02 1.54 16 4 C 0.10 1.53 6.45 86.54 0.56 2.09 16 5 N -0.62 -16.93 3.31 -807.15 -2.67 -19.61 16 6 C 0.52 17.23 7.99 87.66 0.70 17.93 16 7 O -0.59 -27.89 16.76 15.99 0.27 -27.62 16 8 C 0.06 1.29 5.40 71.24 0.38 1.68 16 9 O -0.40 -11.58 9.87 -127.37 -1.26 -12.84 16 10 C 0.06 1.05 5.65 71.98 0.41 1.46 16 11 C 0.07 1.34 3.72 31.26 0.12 1.46 16 12 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 13 C -0.14 -1.33 6.57 32.05 0.21 -1.12 16 14 C -0.15 -1.55 7.02 31.85 0.22 -1.33 16 15 C 0.03 0.62 7.79 72.45 0.56 1.19 16 16 O -0.41 -11.37 11.04 -148.28 -1.64 -13.01 16 17 C 0.11 3.43 5.93 86.67 0.51 3.94 16 18 C -0.07 -2.05 0.73 -51.13 -0.04 -2.09 16 19 C -0.13 -3.24 7.11 71.98 0.51 -2.72 16 20 C 0.17 6.95 4.96 86.38 0.43 7.38 16 21 N -0.75 -38.17 4.60 -343.45 -1.58 -39.75 16 22 C -0.23 -14.47 10.47 84.03 0.88 -13.59 16 23 H 0.05 3.53 8.06 -2.91 -0.02 3.51 16 24 C -0.06 -4.09 5.50 84.86 0.47 -3.63 16 25 N -0.98 -67.09 13.97 21.65 0.30 -66.79 16 26 Si 0.95 49.12 27.73 68.60 1.90 51.02 16 27 H -0.29 -15.28 7.11 99.48 0.71 -14.57 16 28 H -0.29 -14.59 7.11 99.48 0.71 -13.88 16 29 H -0.24 -11.07 6.52 99.48 0.65 -10.42 16 30 H 0.07 0.71 6.63 -2.39 -0.02 0.69 16 31 H 0.06 0.79 6.99 -2.39 -0.02 0.78 16 32 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.11 0.97 7.30 -2.38 -0.02 0.95 16 34 H 0.11 0.98 7.87 -2.39 -0.02 0.97 16 35 H 0.10 1.71 7.95 -2.39 -0.02 1.69 16 36 H 0.12 1.48 8.14 -2.38 -0.02 1.46 16 37 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.70 8.06 -2.39 -0.02 0.68 16 41 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 45 H 0.09 2.43 7.84 -2.38 -0.02 2.41 16 46 H 0.04 1.71 6.96 -2.39 -0.02 1.69 16 47 H 0.09 1.57 6.68 -2.39 -0.02 1.55 16 48 H 0.03 0.98 6.74 -2.39 -0.02 0.97 16 49 H 0.07 1.67 6.89 -2.39 -0.02 1.66 16 50 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 51 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.37 17.73 3.85 -92.71 -0.36 17.37 16 53 H 0.26 16.72 8.31 -92.71 -0.77 15.94 16 Total: -1.00 -96.54 410.13 2.26 -94.28 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.47 Total: 24.37 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.47 Total: 9.94 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -3.95 Total: -126.15 kcal Atomic # 8 Polarization: -50.84 SS G_CDS: -2.63 Total: -53.47 kcal Atomic # 14 Polarization: 49.12 SS G_CDS: 1.90 Total: 51.02 kcal Total: -96.54 2.26 -94.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001183640055.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.804 kcal (2) G-P(sol) polarization free energy of solvation -96.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds