Wall clock time and date at job start Wed Apr 1 2020 00:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.49918 * 2 1 4 4 C 1.53196 * 109.49572 * 120.06517 * 2 1 3 5 5 N 1.46922 * 108.77584 * 65.34525 * 4 2 1 6 6 C 1.34775 * 120.63343 * 233.63021 * 5 4 2 7 7 O 1.21285 * 119.99937 * 0.02562 * 6 5 4 8 8 C 1.50704 * 120.00003 * 179.97438 * 6 5 4 9 9 O 1.42902 * 109.46905 * 180.02562 * 8 6 5 10 10 C 1.42897 * 113.99833 * 180.02562 * 9 8 6 11 11 C 1.53170 * 109.54527 * 269.55161 * 10 9 8 12 12 C 1.53086 * 109.16742 * 183.15315 * 11 10 9 13 13 O 1.42907 * 109.41501 * 57.60983 * 12 11 10 14 14 C 1.42896 * 114.09525 * 298.84126 * 13 12 11 15 15 C 1.53099 * 109.41472 * 61.15939 * 14 13 12 16 16 C 1.46933 * 118.73901 * 53.60788 * 5 4 2 17 17 C 1.53191 * 108.77511 * 306.39286 * 16 5 4 18 18 C 1.53039 * 109.49913 * 239.93346 * 2 1 3 19 19 H 1.08995 * 109.45917 * 181.36457 * 18 2 1 20 20 C 1.53005 * 109.45951 * 61.40423 * 18 2 1 21 21 N 1.46496 * 109.47011 * 175.00039 * 20 18 2 22 22 C 1.36942 * 119.99925 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99925 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99769 * 180.02562 * 22 21 20 25 25 N 1.31627 * 119.99766 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00513 * 0.02562 * 24 22 21 27 27 H 1.48504 * 109.46796 * 89.99916 * 26 24 22 28 28 H 1.48498 * 109.47434 * 210.00249 * 26 24 22 29 29 H 1.48506 * 109.46946 * 330.00466 * 26 24 22 30 30 H 1.09000 * 109.47337 * 300.00685 * 1 2 3 31 31 H 1.09003 * 109.46962 * 59.99855 * 1 2 3 32 32 H 1.08992 * 109.47809 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.58760 * 185.13921 * 4 2 1 34 34 H 1.09001 * 109.58151 * 305.41931 * 4 2 1 35 35 H 1.08998 * 109.47505 * 300.00155 * 8 6 5 36 36 H 1.08997 * 109.46695 * 60.00418 * 8 6 5 37 37 H 1.09000 * 109.54428 * 29.82281 * 10 9 8 38 38 H 1.09004 * 109.52298 * 303.06204 * 11 10 9 39 39 H 1.09007 * 109.52313 * 63.24493 * 11 10 9 40 40 H 1.09004 * 109.48274 * 297.62598 * 12 11 10 41 41 H 1.09002 * 109.48245 * 177.59422 * 12 11 10 42 42 H 1.08996 * 109.48412 * 301.17433 * 14 13 12 43 43 H 1.09007 * 109.47856 * 181.13692 * 14 13 12 44 44 H 1.09004 * 109.52135 * 182.48016 * 15 14 13 45 45 H 1.09002 * 109.57196 * 62.32376 * 15 14 13 46 46 H 1.09001 * 109.58081 * 66.18012 * 16 5 4 47 47 H 1.08997 * 109.58811 * 186.60252 * 16 5 4 48 48 H 1.09000 * 109.49646 * 174.58129 * 17 16 5 49 49 H 1.09000 * 109.50038 * 294.64703 * 17 16 5 50 50 H 1.08996 * 109.47191 * 295.00037 * 20 18 2 51 51 H 1.09001 * 109.46855 * 55.00380 * 20 18 2 52 52 H 0.97000 * 120.00445 * 359.97438 * 21 20 18 53 53 H 0.97000 * 119.99771 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 1.6521 -2.1380 1.1699 6 6 0.9745 -2.7218 2.1781 7 8 0.6799 -2.0787 3.1632 8 6 0.5819 -4.1736 2.0808 9 8 -0.1222 -4.5569 3.2637 10 6 -0.5413 -5.9230 3.2737 11 6 -1.9436 -6.0332 2.6676 12 6 -2.4159 -7.4868 2.7543 13 8 -2.3977 -7.9116 4.1186 14 6 -1.1037 -7.8751 4.7238 15 6 -0.5787 -6.4370 4.7162 16 6 2.0152 -2.9039 -0.0303 17 6 1.5042 -2.1559 -1.2658 18 6 2.0408 -0.7228 -1.2485 19 1 3.1305 -0.7436 -1.2357 20 6 1.5601 0.0173 -2.4984 21 7 2.1461 -0.6033 -3.6890 22 6 1.8567 -0.1077 -4.9323 23 1 1.1967 0.7409 -5.0351 24 6 2.4115 -0.6961 -6.0605 25 7 2.1337 -0.2194 -7.2555 26 14 3.5526 -2.1644 -5.8828 27 1 2.7568 -3.4176 -5.9251 28 1 4.5360 -2.1647 -6.9954 29 1 4.2718 -2.0784 -4.5864 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0275 -0.0005 33 1 3.1273 -0.6454 1.2986 34 1 1.6021 -0.2712 2.1391 35 1 -0.0609 -4.3188 1.2126 36 1 1.4776 -4.7859 1.9762 37 1 0.1575 -6.5231 2.6909 38 1 -2.6310 -5.3932 3.2209 39 1 -1.9147 -5.7212 1.6235 40 1 -1.7511 -8.1206 2.1673 41 1 -3.4304 -7.5634 2.3632 42 1 -0.4218 -8.5140 4.1626 43 1 -1.1730 -8.2313 5.7517 44 1 0.4264 -6.4139 5.1374 45 1 -1.2377 -5.8046 5.3112 46 1 3.0992 -3.0037 -0.0859 47 1 1.5570 -3.8918 0.0142 48 1 1.8498 -2.6629 -2.1667 49 1 0.4144 -2.1366 -1.2545 50 1 0.4731 -0.0378 -2.5577 51 1 1.8686 1.0613 -2.4437 52 1 2.7392 -1.3653 -3.5967 53 1 2.5218 -0.6303 -8.0438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185224708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:43 Heat of formation + Delta-G solvation = -142.272337 kcal Electronic energy + Delta-G solvation = -30803.981630 eV Core-core repulsion = 26674.849980 eV Total energy + Delta-G solvation = -4129.131650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.57255 -40.56663 -39.40202 -38.16290 -36.67996 -34.91094 -33.65544 -33.34092 -32.23206 -32.11475 -29.72698 -28.72137 -27.22056 -25.32405 -25.02375 -24.55316 -24.16847 -22.86003 -21.50044 -21.09528 -19.97321 -19.14164 -18.52675 -17.75463 -17.31004 -17.25871 -16.90130 -16.74994 -16.34791 -16.08835 -15.92689 -15.74718 -15.55241 -15.22916 -14.96733 -14.85655 -14.72410 -14.41990 -14.15025 -14.01082 -13.75472 -13.73823 -13.48272 -13.27143 -13.24864 -12.85240 -12.70429 -12.48090 -12.43471 -12.26482 -12.17769 -12.04603 -11.91457 -11.84170 -11.58203 -11.42510 -11.35616 -11.28967 -10.93027 -10.78625 -10.67630 -10.56102 -9.65836 -9.26157 -8.00609 -5.34360 1.38769 1.44577 1.51801 1.52170 1.68425 2.51120 2.70155 2.96288 3.30619 3.44141 3.55580 3.71240 3.73537 3.77880 3.83888 3.96022 4.01571 4.05421 4.10110 4.11140 4.21341 4.25456 4.26004 4.36681 4.41242 4.46997 4.51189 4.63245 4.66370 4.72177 4.74533 4.75715 4.81372 4.82026 4.82209 4.97518 5.03637 5.04709 5.10163 5.15259 5.16972 5.17816 5.21881 5.29273 5.50156 5.59863 5.77748 6.06716 6.22818 6.23024 6.36803 7.10669 7.11394 7.86179 8.07406 9.21190 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013967 B = 0.002346 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.279888 B =11933.522358 C =13117.774049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.090 0.910 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.512 3.488 7 O -0.574 6.574 8 C 0.044 3.956 9 O -0.385 6.385 10 C 0.083 3.917 11 C -0.178 4.178 12 C 0.062 3.938 13 O -0.406 6.406 14 C 0.064 3.936 15 C -0.153 4.153 16 C 0.107 3.893 17 C -0.130 4.130 18 C -0.082 4.082 19 H 0.079 0.921 20 C 0.160 3.840 21 N -0.753 5.753 22 C -0.235 4.235 23 H 0.049 0.951 24 C -0.070 4.070 25 N -0.987 5.987 26 Si 0.960 3.040 27 H -0.273 1.273 28 H -0.300 1.300 29 H -0.245 1.245 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.100 0.900 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.091 0.909 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.066 0.934 50 H 0.023 0.977 51 H 0.017 0.983 52 H 0.368 0.632 53 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 -17.419 24.523 30.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.110 4.110 3 H 0.108 0.892 4 C -0.001 4.001 5 N -0.335 5.335 6 C 0.300 3.700 7 O -0.453 6.453 8 C -0.036 4.036 9 O -0.304 6.304 10 C 0.026 3.974 11 C -0.216 4.216 12 C -0.014 4.014 13 O -0.325 6.325 14 C -0.012 4.012 15 C -0.190 4.190 16 C -0.015 4.015 17 C -0.168 4.168 18 C -0.101 4.101 19 H 0.098 0.902 20 C 0.034 3.966 21 N -0.400 5.400 22 C -0.366 4.366 23 H 0.067 0.933 24 C -0.261 4.261 25 N -0.638 5.638 26 Si 0.786 3.214 27 H -0.198 1.198 28 H -0.227 1.227 29 H -0.169 1.169 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.118 0.882 36 H 0.128 0.872 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.089 0.911 41 H 0.122 0.878 42 H 0.090 0.910 43 H 0.128 0.872 44 H 0.107 0.893 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.128 0.872 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.041 0.959 51 H 0.035 0.965 52 H 0.202 0.798 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.186 -16.871 25.173 30.382 hybrid contribution 0.607 0.014 -1.068 1.229 sum -1.579 -16.857 24.105 29.457 Atomic orbital electron populations 1.21811 0.95294 1.01560 1.01199 1.21396 0.96205 0.99930 0.93446 0.89206 1.21631 1.00278 0.80137 0.98096 1.48095 1.55460 1.11752 1.18177 1.20755 0.77147 0.89796 0.82261 1.90694 1.55606 1.66236 1.32807 1.22448 0.98942 0.92207 0.89954 1.88044 1.74986 1.28475 1.38927 1.22360 0.95285 0.82068 0.97719 1.22730 0.97437 0.98891 1.02582 1.22677 1.03357 0.92615 0.82751 1.87927 1.30848 1.86885 1.26822 1.22714 0.84292 0.94155 1.00070 1.22300 1.03244 0.97758 0.95741 1.22023 1.02005 0.95231 0.82205 1.21966 1.01536 0.95255 0.98064 1.21249 1.00638 0.95248 0.92988 0.90230 1.20829 0.95733 0.94884 0.85122 1.42667 1.57506 1.37772 1.02017 1.19015 1.22570 1.10814 0.84223 0.93265 1.25614 1.02810 1.03100 0.94529 1.69915 1.50368 1.45411 0.98115 0.85341 0.78686 0.79420 0.77943 1.19845 1.22732 1.16878 0.93053 0.92904 0.93007 0.89723 0.90304 0.88236 0.87164 0.89304 0.92215 0.89521 0.91067 0.87776 0.91024 0.87187 0.89301 0.92118 0.89038 0.87215 0.90703 0.91514 0.95946 0.96537 0.79784 0.93409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.38 71.98 0.60 -2.78 16 2 C -0.09 -1.98 2.72 -10.72 -0.03 -2.01 16 3 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 4 C 0.12 2.46 5.82 86.36 0.50 2.97 16 5 N -0.60 -11.55 2.41 -818.89 -1.98 -13.52 16 6 C 0.51 11.78 7.78 87.66 0.68 12.46 16 7 O -0.57 -18.83 15.92 15.99 0.25 -18.57 16 8 C 0.04 0.68 4.58 71.24 0.33 1.01 16 9 O -0.39 -8.03 9.53 -129.94 -1.24 -9.26 16 10 C 0.08 1.16 2.70 30.71 0.08 1.24 16 11 C -0.18 -2.42 5.76 30.68 0.18 -2.24 16 12 C 0.06 0.71 6.84 72.01 0.49 1.20 16 13 O -0.41 -6.28 10.77 -148.98 -1.60 -7.89 16 14 C 0.06 0.68 6.84 72.02 0.49 1.17 16 15 C -0.15 -2.06 5.79 30.69 0.18 -1.88 16 16 C 0.11 1.57 6.34 86.36 0.55 2.11 16 17 C -0.13 -2.77 4.90 30.67 0.15 -2.62 16 18 C -0.08 -2.05 1.96 -10.76 -0.02 -2.07 16 19 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 20 C 0.16 5.68 5.19 86.38 0.45 6.13 16 21 N -0.75 -33.15 5.12 -343.46 -1.76 -34.91 16 22 C -0.24 -13.19 10.47 84.03 0.88 -12.31 16 23 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.99 -62.79 13.97 21.65 0.30 -62.49 16 26 Si 0.96 43.19 27.74 68.60 1.90 45.09 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 29 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.36 6.58 -2.39 -0.02 1.35 16 32 H 0.05 1.26 5.97 -2.39 -0.01 1.24 16 33 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.88 7.01 -2.39 -0.02 1.86 16 35 H 0.10 1.15 7.54 -2.39 -0.02 1.14 16 36 H 0.11 1.02 7.89 -2.39 -0.02 1.00 16 37 H 0.09 0.77 7.79 -2.39 -0.02 0.76 16 38 H 0.06 1.08 8.14 -2.38 -0.02 1.07 16 39 H 0.09 0.97 7.99 -2.38 -0.02 0.95 16 40 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.11 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.11 0.99 5.93 -2.39 -0.01 0.97 16 48 H 0.07 1.75 7.15 -2.39 -0.02 1.73 16 49 H 0.07 1.52 6.34 -2.39 -0.02 1.51 16 50 H 0.02 0.84 6.74 -2.39 -0.02 0.82 16 51 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.37 14.90 4.71 -92.71 -0.44 14.47 16 53 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -78.41 401.63 2.26 -76.15 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.40 Total: 26.57 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 5.98 Total: -1.17 kcal Atomic # 7 Polarization: -107.49 SS G_CDS: -3.43 Total: -110.92 kcal Atomic # 8 Polarization: -33.14 SS G_CDS: -2.59 Total: -35.72 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 1.90 Total: 45.09 kcal Total: -78.41 2.26 -76.15 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185224708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.121 kcal (2) G-P(sol) polarization free energy of solvation -78.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds