Wall clock time and date at job start Wed Apr 1 2020 00:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.53062 * 2 1 4 4 C 1.53625 * 109.63455 * 239.91492 * 2 1 3 5 5 N 1.46930 * 108.54395 * 294.86524 * 4 2 1 6 6 C 1.34779 * 120.62972 * 126.36545 * 5 4 2 7 7 O 1.21282 * 119.99922 * 359.72776 * 6 5 4 8 8 C 1.50699 * 120.00037 * 179.72344 * 6 5 4 9 9 O 1.42905 * 109.46972 * 180.02562 * 8 6 5 10 10 C 1.42899 * 113.99778 * 180.02562 * 9 8 6 11 11 C 1.53177 * 109.54234 * 269.55191 * 10 9 8 12 12 C 1.53091 * 109.16514 * 183.15597 * 11 10 9 13 13 O 1.42902 * 109.41656 * 57.60533 * 12 11 10 14 14 C 1.42907 * 114.09785 * 298.84692 * 13 12 11 15 15 C 1.53090 * 109.41431 * 61.15874 * 14 13 12 16 16 C 1.46920 * 118.74035 * 306.09671 * 5 4 2 17 17 C 1.53195 * 108.77666 * 53.86068 * 16 5 4 18 18 C 1.53039 * 109.49513 * 120.08366 * 2 1 3 19 19 H 1.09001 * 109.46313 * 178.60256 * 18 2 1 20 20 C 1.53006 * 109.44851 * 298.56998 * 18 2 1 21 21 N 1.46502 * 109.47290 * 185.06087 * 20 18 2 22 22 C 1.36928 * 120.00015 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99987 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00147 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99948 * 180.02562 * 24 22 21 26 26 Si 1.86793 * 119.99780 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46953 * 90.00636 * 26 24 22 28 28 H 1.48507 * 109.47099 * 210.00077 * 26 24 22 29 29 H 1.48501 * 109.47490 * 330.00212 * 26 24 22 30 30 H 1.08995 * 109.47303 * 299.92539 * 1 2 3 31 31 H 1.09007 * 109.46340 * 59.91965 * 1 2 3 32 32 H 1.08993 * 109.46968 * 179.91586 * 1 2 3 33 33 H 1.09001 * 109.74198 * 175.13173 * 4 2 1 34 34 H 1.08993 * 109.66875 * 54.56154 * 4 2 1 35 35 H 1.09000 * 109.47247 * 60.00371 * 8 6 5 36 36 H 1.09001 * 109.47358 * 299.99798 * 8 6 5 37 37 H 1.08998 * 109.54481 * 29.82309 * 10 9 8 38 38 H 1.08997 * 109.52326 * 303.06311 * 11 10 9 39 39 H 1.09007 * 109.52331 * 63.24865 * 11 10 9 40 40 H 1.09010 * 109.47873 * 297.62480 * 12 11 10 41 41 H 1.08997 * 109.48195 * 177.59448 * 12 11 10 42 42 H 1.08992 * 109.47872 * 301.17198 * 14 13 12 43 43 H 1.09004 * 109.48485 * 181.14598 * 14 13 12 44 44 H 1.08999 * 109.52031 * 182.48479 * 15 14 13 45 45 H 1.08999 * 109.57751 * 62.32554 * 15 14 13 46 46 H 1.09006 * 109.58628 * 173.64332 * 16 5 4 47 47 H 1.08999 * 109.58817 * 294.06650 * 16 5 4 48 48 H 1.08995 * 109.49921 * 65.31395 * 17 16 5 49 49 H 1.08996 * 109.49922 * 185.38483 * 17 16 5 50 50 H 1.09001 * 109.46845 * 305.06467 * 20 18 2 51 51 H 1.09001 * 109.46653 * 65.06042 * 20 18 2 52 52 H 0.97002 * 119.99434 * 0.02562 * 21 20 18 53 53 H 0.97001 * 119.99490 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0272 0.0000 4 6 2.0462 -0.7253 -1.2520 5 7 1.6516 -2.1382 -1.1696 6 6 0.9747 -2.7221 -2.1783 7 8 0.6815 -2.0791 -3.1639 8 6 0.5824 -4.1739 -2.0815 9 8 -0.1198 -4.5575 -3.2655 10 6 -0.5395 -5.9235 -3.2754 11 6 0.5538 -6.7909 -3.9068 12 6 0.0637 -8.2391 -3.9851 13 8 -1.1492 -8.2901 -4.7390 14 6 -2.2216 -7.5355 -4.1708 15 6 -1.8233 -6.0590 -4.1001 16 6 2.0139 -2.9041 0.0307 17 6 1.5028 -2.1559 1.2660 18 6 2.0407 -0.7232 1.2483 19 1 3.1305 -0.7446 1.2353 20 6 1.5603 0.0171 2.4983 21 7 2.1473 -0.6028 3.6888 22 6 1.8592 -0.1062 4.9319 23 1 1.1988 0.7422 5.0348 24 6 2.4158 -0.6932 6.0600 25 7 2.1383 -0.2162 7.2549 26 14 3.5573 -2.1610 5.8821 27 1 4.9573 -1.6853 5.7436 28 1 3.4447 -3.0244 7.0852 29 1 3.1776 -2.9403 4.6764 30 1 -0.3634 0.5126 0.8906 31 1 -0.3632 0.5151 -0.8894 32 1 -0.3633 -1.0276 -0.0015 33 1 3.1327 -0.6516 -1.2985 34 1 1.6090 -0.2752 -2.1432 35 1 -0.0610 -4.3194 -1.2138 36 1 1.4781 -4.7861 -1.9763 37 1 -0.7256 -6.2552 -2.2540 38 1 0.7741 -6.4262 -4.9100 39 1 1.4548 -6.7438 -3.2951 40 1 -0.1178 -8.6163 -2.9785 41 1 0.8208 -8.8532 -4.4725 42 1 -2.4329 -7.9035 -3.1669 43 1 -3.1108 -7.6428 -4.7920 44 1 -2.6223 -5.4885 -3.6267 45 1 -1.6513 -5.6785 -5.1070 46 1 1.5552 -3.8919 -0.0138 47 1 3.0978 -3.0045 0.0868 48 1 0.4131 -2.1355 1.2540 49 1 1.8474 -2.6632 2.1671 50 1 1.8683 1.0612 2.4429 51 1 0.4734 -0.0385 2.5581 52 1 2.7407 -1.3646 3.5963 53 1 2.5270 -0.6267 8.0432 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185224711.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:55 Heat of formation + Delta-G solvation = -142.257238 kcal Electronic energy + Delta-G solvation = -30756.066202 eV Core-core repulsion = 26626.935206 eV Total energy + Delta-G solvation = -4129.130995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.56654 -40.56448 -39.39651 -38.16305 -36.67824 -34.90657 -33.65100 -33.33246 -32.22604 -32.11483 -29.72880 -28.72024 -27.21315 -25.32381 -25.02086 -24.55282 -24.16805 -22.86027 -21.49841 -21.09159 -19.97335 -19.13982 -18.53709 -17.73348 -17.34519 -17.22600 -16.91292 -16.70037 -16.48311 -16.03845 -15.86213 -15.74927 -15.53692 -15.22475 -15.05956 -14.84032 -14.68427 -14.40564 -14.14114 -14.04445 -13.76151 -13.67741 -13.50814 -13.27765 -13.25157 -12.86054 -12.69676 -12.47429 -12.44036 -12.26860 -12.14327 -12.05897 -11.92423 -11.84134 -11.55791 -11.42578 -11.36525 -11.28594 -10.93950 -10.78477 -10.67139 -10.56471 -9.65695 -9.26055 -8.00544 -5.34214 1.38476 1.44895 1.51959 1.52231 1.68065 2.51261 2.69990 2.96166 3.30760 3.44085 3.55740 3.71395 3.73211 3.78040 3.83671 3.96198 4.01733 4.05300 4.10238 4.10924 4.21171 4.25410 4.26156 4.36644 4.41322 4.47070 4.51534 4.63390 4.66366 4.72407 4.74597 4.75861 4.81558 4.81974 4.82383 4.97859 5.03425 5.04865 5.09796 5.15535 5.17311 5.18202 5.22212 5.29392 5.50226 5.60112 5.77794 6.06415 6.22564 6.23095 6.36630 7.10765 7.11284 7.86295 8.07567 9.21256 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014335 B = 0.002300 C = 0.002099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1952.732279 B =12171.432088 C =13334.674950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.090 4.090 3 H 0.090 0.910 4 C 0.121 3.879 5 N -0.601 5.601 6 C 0.512 3.488 7 O -0.574 6.574 8 C 0.044 3.956 9 O -0.385 6.385 10 C 0.082 3.918 11 C -0.176 4.176 12 C 0.061 3.939 13 O -0.405 6.405 14 C 0.065 3.935 15 C -0.154 4.154 16 C 0.107 3.893 17 C -0.130 4.130 18 C -0.083 4.083 19 H 0.080 0.920 20 C 0.160 3.840 21 N -0.753 5.753 22 C -0.235 4.235 23 H 0.049 0.951 24 C -0.070 4.070 25 N -0.988 5.988 26 Si 0.960 3.040 27 H -0.280 1.280 28 H -0.299 1.299 29 H -0.239 1.239 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.085 0.915 45 H 0.062 0.938 46 H 0.109 0.891 47 H 0.091 0.909 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.017 0.983 51 H 0.022 0.978 52 H 0.368 0.632 53 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.618 -17.181 -24.141 29.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.109 4.109 3 H 0.108 0.892 4 C -0.002 4.002 5 N -0.335 5.335 6 C 0.300 3.700 7 O -0.453 6.453 8 C -0.035 4.035 9 O -0.304 6.304 10 C 0.025 3.975 11 C -0.214 4.214 12 C -0.015 4.015 13 O -0.324 6.324 14 C -0.012 4.012 15 C -0.192 4.192 16 C -0.014 4.014 17 C -0.168 4.168 18 C -0.102 4.102 19 H 0.099 0.901 20 C 0.034 3.966 21 N -0.400 5.400 22 C -0.366 4.366 23 H 0.067 0.933 24 C -0.261 4.261 25 N -0.638 5.638 26 Si 0.786 3.214 27 H -0.206 1.206 28 H -0.226 1.226 29 H -0.163 1.163 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.120 0.880 36 H 0.125 0.875 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.080 0.920 46 H 0.127 0.873 47 H 0.109 0.891 48 H 0.085 0.915 49 H 0.092 0.908 50 H 0.035 0.965 51 H 0.040 0.960 52 H 0.202 0.798 53 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.944 -16.682 -24.863 30.085 hybrid contribution 0.586 0.019 1.093 1.241 sum -2.358 -16.663 -23.770 29.124 Atomic orbital electron populations 1.21805 0.95262 1.01566 1.01207 1.21467 0.96201 0.99897 0.93382 0.89216 1.21737 1.00203 0.80118 0.98107 1.48100 1.55401 1.11886 1.18116 1.20750 0.77187 0.89773 0.82249 1.90693 1.55651 1.66229 1.32757 1.22445 0.99286 0.92102 0.89706 1.88044 1.75111 1.28173 1.39102 1.22366 0.94210 0.80874 1.00095 1.22718 0.99676 0.96542 1.02458 1.22703 0.86546 0.95017 0.97236 1.87926 1.21627 1.70982 1.51893 1.22690 0.90097 0.88240 1.00138 1.22300 0.97108 0.98663 1.01083 1.22016 1.01989 0.95216 0.82227 1.21963 1.01515 0.95287 0.98005 1.21257 1.00685 0.95205 0.93003 0.90147 1.20834 0.95708 0.94917 0.85114 1.42662 1.57714 1.37549 1.02032 1.19013 1.22597 1.10711 0.84269 0.93261 1.25613 1.02837 1.03087 0.94533 1.69914 1.50343 1.45436 0.98129 0.85347 0.78773 0.79414 0.77866 1.20603 1.22569 1.16283 0.92891 0.93030 0.92996 0.89679 0.90292 0.87952 0.87501 0.89609 0.92012 0.89129 0.91224 0.87484 0.91206 0.87253 0.89689 0.91951 0.87270 0.89072 0.91527 0.90813 0.96459 0.96001 0.79785 0.93416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.39 71.98 0.60 -2.74 16 2 C -0.09 -1.96 2.72 -10.57 -0.03 -1.99 16 3 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 4 C 0.12 2.45 5.87 86.51 0.51 2.96 16 5 N -0.60 -11.55 2.40 -818.06 -1.96 -13.52 16 6 C 0.51 11.79 7.78 87.66 0.68 12.47 16 7 O -0.57 -18.82 15.91 16.00 0.25 -18.56 16 8 C 0.04 0.69 4.58 71.24 0.33 1.01 16 9 O -0.39 -8.04 9.53 -129.94 -1.24 -9.28 16 10 C 0.08 1.15 2.70 30.71 0.08 1.23 16 11 C -0.18 -2.15 5.76 30.68 0.18 -1.98 16 12 C 0.06 0.63 6.84 72.01 0.49 1.13 16 13 O -0.41 -6.13 10.77 -148.98 -1.60 -7.73 16 14 C 0.06 0.72 6.84 72.01 0.49 1.21 16 15 C -0.15 -2.17 5.79 30.69 0.18 -1.99 16 16 C 0.11 1.58 6.34 86.36 0.55 2.13 16 17 C -0.13 -2.77 4.91 30.67 0.15 -2.62 16 18 C -0.08 -2.05 1.96 -10.76 -0.02 -2.07 16 19 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 20 C 0.16 5.66 5.18 86.38 0.45 6.11 16 21 N -0.75 -33.07 5.12 -343.44 -1.76 -34.83 16 22 C -0.23 -13.15 10.47 84.03 0.88 -12.27 16 23 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 25 N -0.99 -62.78 13.97 21.65 0.30 -62.48 16 26 Si 0.96 43.17 27.73 68.60 1.90 45.07 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 29 H -0.24 -9.11 6.52 99.48 0.65 -8.46 16 30 H 0.05 1.36 6.58 -2.39 -0.02 1.34 16 31 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.05 1.25 5.97 -2.39 -0.01 1.23 16 33 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.08 1.87 7.00 -2.39 -0.02 1.86 16 35 H 0.10 1.15 7.64 -2.39 -0.02 1.14 16 36 H 0.11 1.04 7.79 -2.39 -0.02 1.02 16 37 H 0.09 0.81 7.79 -2.39 -0.02 0.80 16 38 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.81 7.99 -2.38 -0.02 0.79 16 40 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 44 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.11 1.00 5.93 -2.38 -0.01 0.98 16 47 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.07 1.52 6.34 -2.39 -0.02 1.51 16 49 H 0.07 1.76 7.15 -2.39 -0.02 1.74 16 50 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 51 H 0.02 0.82 6.74 -2.39 -0.02 0.80 16 52 H 0.37 14.86 4.71 -92.71 -0.44 14.42 16 53 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -78.20 401.66 2.28 -75.92 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.40 Total: 26.39 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: 5.99 Total: -0.98 kcal Atomic # 7 Polarization: -107.41 SS G_CDS: -3.42 Total: -110.83 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -2.59 Total: -35.57 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 1.90 Total: 45.07 kcal Total: -78.20 2.28 -75.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185224711.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.333 kcal (2) G-P(sol) polarization free energy of solvation -78.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds