Wall clock time and date at job start Wed Apr 1 2020 01:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46849 * 2 1 4 4 C 1.50706 * 109.46931 * 119.99989 * 2 1 3 5 5 O 1.21274 * 119.99693 * 120.00835 * 4 2 1 6 6 N 1.34774 * 119.99801 * 299.99707 * 4 2 1 7 7 C 1.47511 * 118.75958 * 359.74221 * 6 4 2 8 8 C 1.53203 * 111.23275 * 221.50513 * 7 6 4 9 9 C 1.51528 * 109.43235 * 40.26383 * 8 7 6 10 10 O 1.42158 * 108.76697 * 268.50096 * 9 8 7 11 11 C 1.38013 * 119.43154 * 87.21523 * 10 9 8 12 12 H 1.09002 * 109.46741 * 56.58144 * 11 10 9 13 13 C 1.53000 * 109.46493 * 176.57005 * 11 10 9 14 14 N 1.46501 * 109.47312 * 300.01531 * 13 11 10 15 15 C 1.36942 * 119.99724 * 180.02562 * 14 13 11 16 16 H 1.07997 * 120.00300 * 359.97438 * 15 14 13 17 17 C 1.38820 * 119.99570 * 179.97438 * 15 14 13 18 18 N 1.31621 * 119.99842 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46872 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47044 * 120.00239 * 19 17 15 22 22 H 1.48497 * 109.46839 * 240.00111 * 19 17 15 23 23 C 1.45122 * 118.75487 * 180.02562 * 6 4 2 24 24 C 1.52997 * 109.47401 * 240.00243 * 2 1 3 25 25 C 1.53177 * 109.54370 * 180.02562 * 24 2 1 26 26 C 1.53098 * 109.21356 * 183.18188 * 25 24 2 27 27 O 1.42899 * 109.40993 * 57.57693 * 26 25 24 28 28 C 1.42898 * 114.10053 * 298.83671 * 27 26 25 29 29 C 1.53097 * 109.41405 * 61.16391 * 28 27 26 30 30 H 1.08997 * 109.47285 * 299.99973 * 1 2 3 31 31 H 1.09001 * 109.47201 * 60.00066 * 1 2 3 32 32 H 1.09002 * 109.46849 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.16343 * 342.02109 * 7 6 4 34 34 H 1.08996 * 109.16644 * 101.22584 * 7 6 4 35 35 H 1.08997 * 109.61092 * 280.22128 * 8 7 6 36 36 H 1.09008 * 109.42491 * 160.19293 * 8 7 6 37 37 H 1.09005 * 109.58828 * 148.72003 * 9 8 7 38 38 H 1.09000 * 109.71218 * 28.35948 * 9 8 7 39 39 H 1.08998 * 109.47401 * 60.01674 * 13 11 10 40 40 H 1.09006 * 109.47207 * 180.02562 * 13 11 10 41 41 H 0.96997 * 119.99629 * 359.97438 * 14 13 11 42 42 H 0.96997 * 119.99721 * 180.02562 * 18 17 15 43 43 H 1.09003 * 109.46329 * 210.73083 * 23 6 4 44 44 H 1.09007 * 109.46245 * 330.70671 * 23 6 4 45 45 H 1.09005 * 109.61074 * 300.21939 * 24 2 1 46 46 H 1.09002 * 109.52487 * 63.24399 * 25 24 2 47 47 H 1.09004 * 109.52023 * 303.12019 * 25 24 2 48 48 H 1.08999 * 109.47354 * 177.55660 * 26 25 24 49 49 H 1.08999 * 109.48099 * 297.59428 * 26 25 24 50 50 H 1.09007 * 109.48578 * 181.14563 * 28 27 26 51 51 H 1.08997 * 109.48390 * 301.18013 * 28 27 26 52 52 H 1.09002 * 109.52138 * 62.29619 * 29 28 27 53 53 H 1.09005 * 109.52063 * 182.42027 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4546 7 6 0.8620 0.9549 2.5580 8 6 1.3606 1.8887 3.6655 9 6 2.8751 1.9315 3.6450 10 8 3.3729 0.9296 4.5220 11 6 3.5657 -0.3521 4.0477 12 1 4.2363 -0.3246 3.1889 13 6 4.1831 -1.2159 5.1493 14 7 5.4707 -0.6455 5.5532 15 6 6.2117 -1.2527 6.5317 16 1 5.8469 -2.1518 7.0059 17 6 7.4320 -0.7125 6.9140 18 7 7.8764 0.3835 6.3364 19 14 8.4433 -1.5411 8.2482 20 1 7.7274 -2.7480 8.7343 21 1 9.7632 -1.9371 7.6949 22 1 8.6428 -0.5966 9.3766 23 6 2.2056 -0.9545 3.6211 24 6 2.0401 -0.7212 -1.2492 25 6 3.5718 -0.7227 -1.2505 26 6 4.0740 -1.3751 -2.5413 27 8 3.5476 -0.6687 -3.6664 28 6 2.1208 -0.6755 -3.7442 29 6 1.5401 0.0051 -2.5018 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.8794 1.4869 1.6069 34 1 -0.1621 0.6559 2.7812 35 1 1.0209 1.5217 4.6340 36 1 0.9668 2.8914 3.4989 37 1 3.2176 2.9114 3.9777 38 1 3.2346 1.7430 2.6333 39 1 3.5126 -1.2435 6.0082 40 1 4.3358 -2.2281 4.7747 41 1 5.7985 0.1618 5.1270 42 1 8.7292 0.7607 6.6033 43 1 1.4917 -0.8545 4.4387 44 1 2.3361 -2.0095 3.3798 45 1 1.6748 -1.7482 -1.2536 46 1 3.9363 -1.2864 -0.3917 47 1 3.9371 0.3028 -1.1947 48 1 5.1631 -1.3395 -2.5666 49 1 3.7431 -2.4131 -2.5765 50 1 1.8027 -0.1358 -4.6364 51 1 1.7643 -1.7042 -3.7952 52 1 1.8635 1.0456 -2.4719 53 1 0.4515 -0.0372 -2.5386 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202242787.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:21 Heat of formation + Delta-G solvation = -134.243575 kcal Electronic energy + Delta-G solvation = -31953.844695 eV Core-core repulsion = 27825.061198 eV Total energy + Delta-G solvation = -4128.783497 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.02812 -40.52156 -39.50287 -37.02781 -36.36134 -36.27879 -34.32307 -32.68660 -32.35737 -31.91693 -30.11733 -27.81860 -27.05278 -26.31345 -25.06268 -24.37163 -23.46102 -22.43694 -22.26745 -21.13346 -19.98907 -19.27416 -18.37731 -17.82404 -17.58071 -17.13533 -16.95508 -16.90817 -16.54109 -16.14548 -15.97345 -15.62093 -15.25290 -15.11694 -14.92602 -14.77281 -14.72080 -14.42884 -14.16999 -13.93952 -13.65267 -13.40773 -13.24103 -13.13229 -13.01630 -12.81170 -12.66670 -12.63881 -12.39845 -12.32754 -12.21608 -12.08288 -11.94318 -11.83127 -11.77135 -11.54965 -11.44460 -11.18891 -11.00746 -10.62709 -10.55312 -10.35148 -9.62658 -9.03247 -7.95825 -5.25798 1.45248 1.47552 1.56964 1.57989 1.92828 2.54756 2.70855 2.96385 3.36486 3.37602 3.56906 3.62335 3.75292 3.83927 3.95680 3.98958 4.06391 4.08874 4.11994 4.21008 4.23817 4.31727 4.35044 4.39577 4.42098 4.44227 4.51550 4.61360 4.66532 4.70109 4.73626 4.77330 4.82484 4.86062 4.87168 4.93146 4.98225 5.00708 5.07319 5.11220 5.11847 5.18919 5.26134 5.35942 5.41943 5.45525 5.54403 6.24672 6.26030 6.30964 6.74069 7.15631 7.30963 8.04979 8.30508 9.28275 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.002820 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.462389 B = 9925.504046 C =11224.229470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.098 4.098 3 H 0.110 0.890 4 C 0.502 3.498 5 O -0.573 6.573 6 N -0.607 5.607 7 C 0.097 3.903 8 C -0.159 4.159 9 C 0.064 3.936 10 O -0.397 6.397 11 C 0.106 3.894 12 H 0.017 0.983 13 C 0.163 3.837 14 N -0.740 5.740 15 C -0.247 4.247 16 H 0.078 0.922 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.292 1.292 22 H -0.290 1.290 23 C 0.095 3.905 24 C -0.064 4.064 25 C -0.161 4.161 26 C 0.065 3.935 27 O -0.404 6.404 28 C 0.051 3.949 29 C -0.143 4.143 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.053 0.947 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.374 0.626 42 H 0.251 0.749 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.058 0.942 48 H 0.090 0.910 49 H 0.050 0.950 50 H 0.112 0.888 51 H 0.052 0.948 52 H 0.075 0.925 53 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.888 3.866 -19.036 30.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.119 4.119 3 H 0.128 0.872 4 C 0.292 3.708 5 O -0.453 6.453 6 N -0.339 5.339 7 C -0.023 4.023 8 C -0.196 4.196 9 C -0.012 4.012 10 O -0.316 6.316 11 C 0.046 3.954 12 H 0.035 0.965 13 C 0.036 3.964 14 N -0.382 5.382 15 C -0.379 4.379 16 H 0.095 0.905 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.808 3.192 20 H -0.189 1.189 21 H -0.219 1.219 22 H -0.217 1.217 23 C -0.030 4.030 24 C -0.083 4.083 25 C -0.198 4.198 26 C -0.012 4.012 27 O -0.324 6.324 28 C -0.025 4.025 29 C -0.180 4.180 30 H 0.105 0.895 31 H 0.113 0.887 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.115 0.885 35 H 0.093 0.907 36 H 0.140 0.860 37 H 0.111 0.889 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.089 0.911 47 H 0.077 0.923 48 H 0.108 0.892 49 H 0.068 0.932 50 H 0.130 0.870 51 H 0.070 0.930 52 H 0.094 0.906 53 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -23.400 3.346 -18.905 30.268 hybrid contribution 1.283 -0.451 0.771 1.563 sum -22.117 2.896 -18.135 28.747 Atomic orbital electron populations 1.22155 0.90264 1.03310 1.05334 1.21385 0.99489 1.00478 0.90512 0.87198 1.21519 0.79163 0.84352 0.85735 1.90645 1.39168 1.28696 1.86782 1.48045 1.51402 1.29381 1.05095 1.22500 0.94216 0.84293 1.01325 1.22413 0.94946 1.02282 1.00008 1.22402 0.94719 0.90915 0.93155 1.86363 1.85400 1.18413 1.41442 1.21852 0.95006 0.83589 0.94933 0.96492 1.20755 0.86835 0.94210 0.94638 1.42423 1.19573 1.31215 1.45036 1.19716 0.99780 1.06540 1.11832 0.90452 1.25660 0.99508 0.98799 1.03075 1.69862 1.21596 1.23786 1.46872 0.84989 0.78174 0.77806 0.78268 1.18861 1.21944 1.21728 1.22050 0.95046 0.97146 0.88735 1.20934 0.94211 0.99442 0.93721 1.22396 0.97090 1.01440 0.98912 1.22523 0.99014 0.94662 0.84994 1.87891 1.22220 1.75890 1.46377 1.22812 0.79911 1.00624 0.99129 1.22281 1.02440 1.00226 0.93046 0.89457 0.88691 0.92827 0.86875 0.88528 0.90731 0.86030 0.88950 0.94110 0.94981 0.94974 0.79479 0.93996 0.88176 0.90325 0.91762 0.91123 0.92316 0.89177 0.93207 0.87011 0.92958 0.90585 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.37 71.98 0.60 -0.71 16 2 C -0.10 -1.51 1.50 -11.54 -0.02 -1.53 16 3 H 0.11 1.43 7.40 -2.39 -0.02 1.41 16 4 C 0.50 12.33 6.76 87.66 0.59 12.92 16 5 O -0.57 -19.40 13.10 -3.01 -0.04 -19.44 16 6 N -0.61 -13.44 2.20 -818.79 -1.80 -15.24 16 7 C 0.10 1.24 4.43 86.25 0.38 1.63 16 8 C -0.16 -2.45 5.78 30.18 0.17 -2.28 16 9 C 0.06 1.63 6.36 71.50 0.46 2.08 16 10 O -0.40 -14.50 9.18 -117.84 -1.08 -15.58 16 11 C 0.11 3.97 2.73 31.19 0.09 4.06 16 12 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 13 C 0.16 7.27 5.95 86.38 0.51 7.78 16 14 N -0.74 -41.55 5.49 -343.44 -1.88 -43.44 16 15 C -0.25 -14.75 9.99 84.03 0.84 -13.91 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 18 N -0.97 -62.61 13.06 21.65 0.28 -62.33 16 19 Si 0.98 48.17 29.55 68.60 2.03 50.19 16 20 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 23 C 0.10 2.69 4.86 87.23 0.42 3.12 16 24 C -0.06 -1.14 1.49 -10.68 -0.02 -1.16 16 25 C -0.16 -3.81 5.05 30.69 0.15 -3.65 16 26 C 0.06 1.45 6.84 72.01 0.49 1.94 16 27 O -0.40 -8.81 10.76 -148.98 -1.60 -10.41 16 28 C 0.05 0.74 6.84 72.01 0.49 1.23 16 29 C -0.14 -1.69 4.98 30.69 0.15 -1.54 16 30 H 0.09 0.49 4.62 -2.39 -0.01 0.48 16 31 H 0.09 0.39 6.53 -2.39 -0.02 0.37 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.11 0.90 4.97 -2.39 -0.01 0.88 16 34 H 0.10 0.80 7.54 -2.39 -0.02 0.78 16 35 H 0.07 1.34 8.01 -2.39 -0.02 1.32 16 36 H 0.12 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.04 1.06 7.41 -2.39 -0.02 1.04 16 39 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.03 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.37 22.61 7.53 -92.71 -0.70 21.91 16 42 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 43 H 0.10 2.47 8.12 -2.39 -0.02 2.45 16 44 H 0.08 2.46 7.27 -2.38 -0.02 2.44 16 45 H 0.06 1.32 8.11 -2.38 -0.02 1.30 16 46 H 0.07 2.17 5.61 -2.39 -0.01 2.16 16 47 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 48 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 49 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 50 H 0.11 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.10 0.68 6.64 -2.38 -0.02 0.66 16 Total: -1.00 -80.10 395.72 1.89 -78.21 By element: Atomic # 1 Polarization: 32.14 SS G_CDS: 0.20 Total: 32.34 kcal Atomic # 6 Polarization: -0.10 SS G_CDS: 5.80 Total: 5.70 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -3.41 Total: -121.00 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -2.73 Total: -45.44 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.03 Total: 50.19 kcal Total: -80.10 1.89 -78.21 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202242787.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.035 kcal (2) G-P(sol) polarization free energy of solvation -80.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds