Wall clock time and date at job start Wed Apr 1 2020 01:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.47289 * 2 1 4 4 C 1.50704 * 109.47014 * 240.00226 * 2 1 3 5 5 O 1.21283 * 119.99706 * 267.34619 * 4 2 1 6 6 N 1.34770 * 120.00018 * 87.34499 * 4 2 1 7 7 C 1.47510 * 118.75942 * 354.40458 * 6 4 2 8 8 C 1.53572 * 111.02946 * 221.61206 * 7 6 4 9 9 C 1.51527 * 109.58286 * 39.97274 * 8 7 6 10 10 O 1.42152 * 108.75908 * 268.60324 * 9 8 7 11 11 C 1.38013 * 119.44555 * 87.22338 * 10 9 8 12 12 H 1.09006 * 109.46081 * 56.58145 * 11 10 9 13 13 C 1.52997 * 109.46884 * 176.57470 * 11 10 9 14 14 N 1.46502 * 109.47147 * 300.01115 * 13 11 10 15 15 C 1.36940 * 119.99931 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00137 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99954 * 180.02562 * 15 14 13 18 18 N 1.31622 * 119.99784 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99912 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46895 * 90.00223 * 19 17 15 21 21 H 1.48495 * 109.46806 * 209.99720 * 19 17 15 22 22 H 1.48494 * 109.47040 * 329.99782 * 19 17 15 23 23 C 1.45123 * 118.75764 * 174.38386 * 6 4 2 24 24 C 1.53003 * 109.47177 * 120.00312 * 2 1 3 25 25 C 1.53171 * 109.54380 * 299.82165 * 24 2 1 26 26 C 1.53096 * 109.15937 * 183.24001 * 25 24 2 27 27 O 1.42903 * 109.48784 * 57.47481 * 26 25 24 28 28 C 1.42908 * 114.09661 * 298.88975 * 27 26 25 29 29 C 1.53087 * 109.41379 * 61.15544 * 28 27 26 30 30 H 1.08996 * 109.47265 * 305.89763 * 1 2 3 31 31 H 1.08997 * 109.47197 * 65.89774 * 1 2 3 32 32 H 1.09003 * 109.47465 * 185.89527 * 1 2 3 33 33 H 1.08997 * 109.16110 * 342.00613 * 7 6 4 34 34 H 1.08998 * 109.16980 * 101.20769 * 7 6 4 35 35 H 1.08995 * 109.45158 * 160.01035 * 8 7 6 36 36 H 1.08999 * 109.44580 * 279.93782 * 8 7 6 37 37 H 1.09000 * 109.59086 * 28.38272 * 9 8 7 38 38 H 1.09002 * 109.59096 * 148.66953 * 9 8 7 39 39 H 1.09003 * 109.46844 * 180.02562 * 13 11 10 40 40 H 1.08990 * 109.47522 * 60.01594 * 13 11 10 41 41 H 0.97004 * 120.00156 * 359.97438 * 14 13 11 42 42 H 0.97003 * 119.99917 * 179.97438 * 18 17 15 43 43 H 1.09006 * 109.46163 * 330.71458 * 23 6 4 44 44 H 1.09004 * 109.45215 * 210.75260 * 23 6 4 45 45 H 1.09001 * 109.54032 * 59.99889 * 24 2 1 46 46 H 1.09000 * 109.52335 * 303.05936 * 25 24 2 47 47 H 1.09003 * 109.52330 * 63.24410 * 25 24 2 48 48 H 1.09004 * 109.40802 * 297.49292 * 26 25 24 49 49 H 1.09004 * 109.48908 * 177.50419 * 26 25 24 50 50 H 1.08996 * 109.48072 * 301.17246 * 28 27 26 51 51 H 1.09001 * 109.47899 * 181.13774 * 28 27 26 52 52 H 1.08999 * 109.52086 * 182.48413 * 29 28 27 53 53 H 1.09008 * 109.52487 * 62.29929 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.2803 -1.8968 -1.1870 6 7 2.2059 -0.0273 -2.3793 7 6 1.7790 1.3834 -2.4376 8 6 1.0838 1.6942 -3.7712 9 6 0.1945 0.5317 -4.1633 10 8 0.9437 -0.3636 -4.9745 11 6 1.6961 -1.3537 -4.3758 12 1 1.0533 -1.9657 -3.7429 13 6 2.3348 -2.2312 -5.4541 14 7 1.2840 -2.8429 -6.2715 15 6 1.6188 -3.6756 -7.3058 16 1 2.6574 -3.8811 -7.5193 17 6 0.6232 -4.2548 -8.0807 18 7 -0.6425 -4.0040 -7.8209 19 14 1.0799 -5.3901 -9.4921 20 1 1.1620 -6.7875 -8.9965 21 1 0.0451 -5.3014 -10.5533 22 1 2.3955 -4.9839 -10.0482 23 6 2.8063 -0.7074 -3.5120 24 6 2.0400 -0.7213 1.2492 25 6 1.5340 0.0019 2.5010 26 6 2.1149 -0.6781 3.7436 27 8 3.5420 -0.6685 3.6691 28 6 4.0723 -1.3720 2.5439 29 6 3.5718 -0.7185 1.2531 30 1 -0.3633 0.6025 0.8324 31 1 -0.3633 0.4196 -0.9380 32 1 -0.3634 -1.0222 0.1056 33 1 1.0875 1.5821 -1.6188 34 1 2.6527 2.0265 -2.3310 35 1 0.4785 2.5942 -3.6639 36 1 1.8359 1.8529 -4.5441 37 1 -0.1468 0.0140 -3.2669 38 1 -0.6656 0.9015 -4.7215 39 1 2.9286 -3.0135 -4.9813 40 1 2.9774 -1.6194 -6.0870 41 1 0.3512 -2.6587 -6.0796 42 1 -1.3382 -4.4084 -8.3625 43 1 3.4842 -1.4818 -3.1531 44 1 3.3623 0.0114 -4.1139 45 1 1.6773 -1.7492 1.2503 46 1 1.8540 1.0436 2.4742 47 1 0.4455 -0.0449 2.5338 48 1 1.7604 -1.7077 3.7921 49 1 1.7939 -0.1406 4.6359 50 1 3.7434 -2.4107 2.5766 51 1 5.1612 -1.3343 2.5718 52 1 3.9393 -1.2801 0.3943 53 1 3.9342 0.3082 1.2003 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202242790.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:35:36 Heat of formation + Delta-G solvation = -143.027411 kcal Electronic energy + Delta-G solvation = -31807.846273 eV Core-core repulsion = 27678.681881 eV Total energy + Delta-G solvation = -4129.164393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.98532 -40.51571 -39.51240 -36.95244 -36.37742 -36.25372 -34.32400 -32.68347 -32.34355 -31.92082 -30.20653 -27.93717 -26.86320 -26.44603 -25.06906 -24.35953 -23.40474 -22.57078 -22.28847 -21.15325 -19.75442 -19.28011 -18.50569 -17.83833 -17.61158 -17.16685 -16.96020 -16.73922 -16.51003 -16.23805 -15.88743 -15.62889 -15.19079 -15.15370 -14.93684 -14.86566 -14.68933 -14.47495 -14.14882 -13.98170 -13.73578 -13.35779 -13.30398 -13.13211 -13.03093 -12.79075 -12.75543 -12.64072 -12.55908 -12.29944 -12.25590 -12.13826 -11.99490 -11.85261 -11.77521 -11.57891 -11.44227 -11.19128 -10.99990 -10.67447 -10.57385 -10.44703 -9.64576 -9.03625 -7.95976 -5.26039 1.44908 1.48403 1.55201 1.56935 1.91626 2.54688 2.70476 2.95538 3.35026 3.37253 3.52875 3.61708 3.75147 3.83893 3.93255 3.98690 4.06116 4.06955 4.12875 4.21283 4.22681 4.30085 4.35103 4.36362 4.39421 4.43485 4.50403 4.60305 4.65565 4.68478 4.69583 4.77522 4.81822 4.84843 4.85156 4.87835 4.92425 4.97866 5.07104 5.08887 5.11294 5.13502 5.18341 5.29490 5.40682 5.44879 5.53349 6.24427 6.24652 6.29194 6.73916 7.13639 7.30669 8.04674 8.30353 9.28040 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002525 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.399669 B =11087.287350 C =11850.604299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.096 4.096 3 H 0.122 0.878 4 C 0.506 3.494 5 O -0.579 6.579 6 N -0.609 5.609 7 C 0.097 3.903 8 C -0.156 4.156 9 C 0.064 3.936 10 O -0.397 6.397 11 C 0.107 3.893 12 H 0.017 0.983 13 C 0.163 3.837 14 N -0.740 5.740 15 C -0.248 4.248 16 H 0.078 0.922 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.980 3.020 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.267 1.267 23 C 0.096 3.904 24 C -0.071 4.071 25 C -0.142 4.142 26 C 0.052 3.948 27 O -0.400 6.400 28 C 0.063 3.937 29 C -0.149 4.149 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.093 0.907 35 H 0.122 0.878 36 H 0.074 0.926 37 H 0.041 0.959 38 H 0.094 0.906 39 H 0.032 0.968 40 H 0.033 0.967 41 H 0.374 0.626 42 H 0.252 0.748 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.046 0.954 49 H 0.113 0.887 50 H 0.043 0.957 51 H 0.101 0.899 52 H 0.055 0.945 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.715 18.637 24.026 30.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 H 0.140 0.860 4 C 0.295 3.705 5 O -0.458 6.458 6 N -0.342 5.342 7 C -0.023 4.023 8 C -0.194 4.194 9 C -0.012 4.012 10 O -0.316 6.316 11 C 0.047 3.953 12 H 0.035 0.965 13 C 0.036 3.964 14 N -0.382 5.382 15 C -0.380 4.380 16 H 0.095 0.905 17 C -0.271 4.271 18 N -0.622 5.622 19 Si 0.808 3.192 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.192 1.192 23 C -0.029 4.029 24 C -0.091 4.091 25 C -0.179 4.179 26 C -0.024 4.024 27 O -0.319 6.319 28 C -0.014 4.014 29 C -0.187 4.187 30 H 0.121 0.879 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.140 0.860 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.050 0.950 40 H 0.050 0.950 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.095 0.905 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.104 0.896 47 H 0.113 0.887 48 H 0.064 0.936 49 H 0.131 0.869 50 H 0.061 0.939 51 H 0.119 0.881 52 H 0.074 0.926 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.105 18.081 23.879 30.384 hybrid contribution -0.447 -1.387 -1.066 1.806 sum 4.658 16.694 22.812 28.649 Atomic orbital electron populations 1.21867 0.91465 1.02762 1.04115 1.21447 0.98430 1.01208 0.90581 0.86010 1.21505 0.76491 0.86971 0.85494 1.90703 1.52199 1.17394 1.85550 1.48086 1.61257 1.13516 1.11291 1.22381 1.01054 0.79373 0.99518 1.22431 1.00311 0.99418 0.97252 1.22406 0.94260 0.89848 0.94686 1.86354 1.62709 1.44288 1.38249 1.21844 0.92127 0.88093 0.93265 0.96521 1.20753 0.91290 0.93145 0.91255 1.42414 1.04716 1.55335 1.35758 1.19686 0.92929 1.19081 1.06302 0.90456 1.25668 0.95171 1.03235 1.02979 1.69859 0.99412 1.49600 1.43309 0.85046 0.77281 0.78418 0.78436 1.21339 1.21883 1.19166 1.22065 0.95295 0.97890 0.87664 1.21017 0.94992 0.99331 0.93711 1.22256 1.02143 1.00647 0.92860 1.22780 0.80098 1.00372 0.99153 1.87896 1.21792 1.75893 1.46320 1.22555 0.99413 0.94473 0.84961 1.22209 0.96053 1.02155 0.98239 0.87864 0.91690 0.93751 0.87148 0.88847 0.86019 0.90768 0.94015 0.88822 0.95038 0.94958 0.79482 0.93968 0.90509 0.88115 0.92529 0.89590 0.88703 0.93587 0.86887 0.93882 0.88081 0.92589 0.90271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.31 71.98 0.60 -1.31 16 2 C -0.10 -1.49 1.45 -11.54 -0.02 -1.50 16 3 H 0.12 1.17 6.75 -2.39 -0.02 1.16 16 4 C 0.51 12.64 5.89 87.66 0.52 13.16 16 5 O -0.58 -20.33 14.67 -3.04 -0.04 -20.38 16 6 N -0.61 -13.81 2.19 -817.96 -1.79 -15.60 16 7 C 0.10 1.30 5.63 86.38 0.49 1.79 16 8 C -0.16 -2.46 5.78 30.30 0.18 -2.28 16 9 C 0.06 1.63 6.37 71.50 0.46 2.08 16 10 O -0.40 -14.58 9.18 -117.84 -1.08 -15.67 16 11 C 0.11 4.04 2.73 31.21 0.09 4.13 16 12 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 13 C 0.16 7.33 5.95 86.38 0.51 7.84 16 14 N -0.74 -41.72 5.49 -343.46 -1.88 -43.61 16 15 C -0.25 -14.88 9.99 84.03 0.84 -14.04 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 18 N -0.97 -62.74 13.06 21.65 0.28 -62.46 16 19 Si 0.98 48.18 29.55 68.60 2.03 50.21 16 20 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 22 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 23 C 0.10 2.76 4.82 87.25 0.42 3.18 16 24 C -0.07 -1.21 1.49 -10.68 -0.02 -1.22 16 25 C -0.14 -1.55 4.98 30.68 0.15 -1.40 16 26 C 0.05 0.69 6.84 72.01 0.49 1.18 16 27 O -0.40 -7.37 10.77 -148.98 -1.60 -8.98 16 28 C 0.06 1.12 6.84 72.01 0.49 1.62 16 29 C -0.15 -2.73 5.09 30.68 0.16 -2.57 16 30 H 0.10 0.72 6.85 -2.39 -0.02 0.70 16 31 H 0.06 0.83 6.95 -2.39 -0.02 0.82 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.93 4.71 -2.39 -0.01 0.92 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.07 1.36 8.01 -2.39 -0.02 1.34 16 37 H 0.04 1.08 7.30 -2.39 -0.02 1.07 16 38 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.37 22.69 7.53 -92.71 -0.70 22.00 16 42 H 0.25 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.08 2.43 7.36 -2.38 -0.02 2.41 16 44 H 0.10 2.52 8.11 -2.39 -0.02 2.50 16 45 H 0.06 1.28 7.86 -2.39 -0.02 1.26 16 46 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 0.73 6.76 -2.39 -0.02 0.72 16 48 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 49 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 51 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.06 1.32 6.67 -2.39 -0.02 1.30 16 53 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 Total: -1.00 -80.60 400.75 1.91 -78.69 By element: Atomic # 1 Polarization: 31.27 SS G_CDS: 0.19 Total: 31.46 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: 5.82 Total: 6.33 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -3.39 Total: -121.67 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -2.73 Total: -45.02 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -80.60 1.91 -78.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202242790.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.338 kcal (2) G-P(sol) polarization free energy of solvation -80.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds