Wall clock time and date at job start Tue Mar 31 2020 23:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.46915 * 2 1 4 4 C 1.53003 * 109.47421 * 239.99705 * 2 1 3 5 5 C 1.53001 * 109.47076 * 300.00335 * 4 2 1 6 6 C 1.53000 * 109.46904 * 299.99539 * 5 4 2 7 7 C 1.53003 * 109.47209 * 60.00154 * 6 5 4 8 8 C 1.53000 * 109.47185 * 119.99783 * 2 1 3 9 9 C 1.53003 * 109.47209 * 300.00069 * 8 2 1 10 10 N 1.46500 * 109.46932 * 185.51831 * 9 8 2 11 11 C 1.36943 * 119.99610 * 175.03958 * 10 9 8 12 12 H 1.08003 * 119.99957 * 359.97438 * 11 10 9 13 13 C 1.38806 * 119.99831 * 180.02562 * 11 10 9 14 14 N 1.31616 * 120.00300 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99779 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46679 * 90.00533 * 15 13 11 17 17 H 1.48499 * 109.47127 * 210.00198 * 15 13 11 18 18 H 1.48498 * 109.47545 * 330.00423 * 15 13 11 19 19 N 1.46497 * 109.47272 * 180.02562 * 8 2 1 20 20 C 1.34774 * 120.00122 * 63.92804 * 19 8 2 21 21 O 1.21274 * 120.00096 * 354.67109 * 20 19 8 22 22 C 1.50703 * 120.00150 * 174.94525 * 20 19 8 23 23 C 1.52993 * 109.47152 * 179.72368 * 22 20 19 24 24 O 1.42965 * 109.47631 * 294.99802 * 23 22 20 25 25 C 1.43094 * 113.77318 * 181.20397 * 24 23 22 26 26 C 1.53255 * 108.94171 * 57.97352 * 25 24 23 27 27 C 1.53260 * 108.84528 * 305.47824 * 26 25 24 28 28 O 1.42970 * 109.47105 * 175.00151 * 23 22 20 29 29 H 1.09002 * 109.47722 * 300.00020 * 1 2 3 30 30 H 1.09001 * 109.47413 * 60.00500 * 1 2 3 31 31 H 1.09000 * 109.46915 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46722 * 60.00218 * 4 2 1 33 33 H 1.09000 * 109.47327 * 179.97438 * 4 2 1 34 34 H 1.09000 * 109.47320 * 59.99656 * 5 4 2 35 35 H 1.09002 * 109.46701 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47017 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.47228 * 300.00174 * 6 5 4 38 38 H 1.08992 * 109.47021 * 179.97438 * 7 6 5 39 39 H 1.09000 * 109.47010 * 59.99886 * 7 6 5 40 40 H 1.08993 * 109.46963 * 305.52064 * 9 8 2 41 41 H 1.09004 * 109.46575 * 65.52118 * 9 8 2 42 42 H 0.96993 * 120.00381 * 355.04184 * 10 9 8 43 43 H 0.96997 * 120.00567 * 179.97438 * 14 13 11 44 44 H 0.97010 * 120.00176 * 243.93349 * 19 8 2 45 45 H 1.09000 * 109.46764 * 299.72510 * 22 20 19 46 46 H 1.09006 * 109.47142 * 59.72213 * 22 20 19 47 47 H 1.09001 * 109.46986 * 55.00272 * 23 22 20 48 48 H 1.08993 * 109.55870 * 298.13413 * 25 24 23 49 49 H 1.09000 * 109.55520 * 177.81207 * 25 24 23 50 50 H 1.08997 * 109.57780 * 185.66641 * 26 25 24 51 51 H 1.09004 * 109.67882 * 65.34426 * 26 25 24 52 52 H 1.09001 * 109.56055 * 294.68308 * 27 26 25 53 53 H 1.09000 * 109.56297 * 174.36521 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0400 -2.8850 0.0001 7 6 1.5300 -2.1637 1.2493 8 6 2.0399 -0.7212 1.2493 9 6 1.5299 0.0001 2.4985 10 7 2.1237 -0.6096 3.6910 11 6 1.8929 -0.0643 4.9258 12 1 1.2734 0.8153 5.0205 13 6 2.4559 -0.6416 6.0556 14 7 3.2121 -1.7127 5.9401 15 14 2.1416 0.1025 7.7399 16 1 0.9279 -0.5131 8.3343 17 1 3.3092 -0.1550 8.6206 18 1 1.9377 1.5671 7.6039 19 7 3.5049 -0.7207 1.2496 20 6 4.1784 0.4440 1.3298 21 8 3.5756 1.4960 1.3043 22 6 5.6810 0.4392 1.4451 23 6 6.1919 1.8797 1.5126 24 8 5.9094 2.5440 0.2786 25 6 6.3750 3.8962 0.2317 26 6 7.8880 3.9102 0.4756 27 6 8.1841 3.1813 1.7908 28 8 7.6036 1.8745 1.7387 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 0.4400 -2.1638 -1.2492 35 1 1.8938 -2.6778 -2.1389 36 1 1.6770 -3.9128 -0.0001 37 1 3.1300 -2.8850 0.0001 38 1 1.8929 -2.6778 2.1392 39 1 0.4400 -2.1637 1.2493 40 1 1.8103 1.0522 2.4504 41 1 0.4444 -0.0848 2.5493 42 1 2.6804 -1.3993 3.6059 43 1 3.6059 -2.1159 6.7295 44 1 3.9903 -1.5586 1.1920 45 1 5.9742 -0.0932 2.3499 46 1 6.1105 -0.0583 0.5754 47 1 5.6951 2.4035 2.3293 48 1 5.8755 4.4811 1.0039 49 1 6.1593 4.3226 -0.7480 50 1 8.2377 4.9404 0.5421 51 1 8.3967 3.4041 -0.3449 52 1 7.7532 3.7391 2.6222 53 1 9.2624 3.0965 1.9263 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267867523.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:54 Heat of formation + Delta-G solvation = -152.482513 kcal Electronic energy + Delta-G solvation = -32835.216684 eV Core-core repulsion = 28705.642287 eV Total energy + Delta-G solvation = -4129.574397 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.87745 -40.91628 -39.11422 -36.68910 -36.44301 -34.70771 -34.21947 -33.31984 -32.74428 -31.41130 -30.53718 -27.77728 -26.94759 -26.57572 -24.86650 -24.64757 -23.01872 -22.24755 -21.95967 -21.29767 -19.47705 -18.96256 -18.75828 -17.86099 -17.55175 -17.08933 -16.90816 -16.55303 -16.24497 -16.04971 -15.75081 -15.70533 -15.30906 -15.10048 -14.69291 -14.60495 -14.51652 -14.31108 -13.96937 -13.88899 -13.70495 -13.54948 -13.24759 -13.01079 -12.83666 -12.79614 -12.62267 -12.43757 -12.41826 -12.24340 -12.12403 -12.10124 -12.08949 -11.92691 -11.80655 -11.20448 -11.11005 -11.04128 -10.99720 -10.87059 -10.71014 -10.32349 -9.73159 -8.91172 -7.93778 -5.19115 1.43919 1.44754 1.53204 1.81730 2.08449 2.55208 2.62899 2.82762 3.39168 3.65364 3.73809 3.76920 3.78326 3.84006 3.86707 3.90766 4.12054 4.15651 4.22952 4.27335 4.38671 4.40381 4.42687 4.48640 4.53457 4.58660 4.61316 4.67901 4.73813 4.78406 4.82237 4.84460 4.89472 4.94627 5.00896 5.08873 5.16812 5.19360 5.21255 5.28966 5.30764 5.43218 5.48487 5.48700 5.56208 5.64476 5.80822 5.84914 6.13857 6.29284 6.74512 7.36558 7.45883 8.12128 8.41067 9.29044 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007126 B = 0.005192 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3928.113821 B = 5391.287452 C = 8281.205955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.058 0.942 4 C -0.102 4.102 5 C -0.114 4.114 6 C -0.113 4.113 7 C -0.115 4.115 8 C 0.191 3.809 9 C 0.144 3.856 10 N -0.727 5.727 11 C -0.240 4.240 12 H 0.059 0.941 13 C -0.066 4.066 14 N -0.961 5.961 15 Si 0.964 3.036 16 H -0.285 1.285 17 H -0.292 1.292 18 H -0.280 1.280 19 N -0.703 5.703 20 C 0.526 3.474 21 O -0.560 6.560 22 C -0.124 4.124 23 C 0.273 3.727 24 O -0.396 6.396 25 C 0.045 3.955 26 C -0.181 4.181 27 C 0.045 3.955 28 O -0.408 6.408 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.052 0.948 39 H 0.079 0.921 40 H 0.016 0.984 41 H 0.018 0.982 42 H 0.378 0.622 43 H 0.251 0.749 44 H 0.406 0.594 45 H 0.116 0.884 46 H 0.127 0.873 47 H 0.037 0.963 48 H 0.046 0.954 49 H 0.114 0.886 50 H 0.112 0.888 51 H 0.083 0.917 52 H 0.053 0.947 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.989 3.264 -18.017 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.113 4.113 3 H 0.077 0.923 4 C -0.139 4.139 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.153 4.153 8 C 0.105 3.895 9 C 0.017 3.983 10 N -0.371 5.371 11 C -0.373 4.373 12 H 0.077 0.923 13 C -0.259 4.259 14 N -0.612 5.612 15 Si 0.794 3.206 16 H -0.212 1.212 17 H -0.218 1.218 18 H -0.205 1.205 19 N -0.354 5.354 20 C 0.313 3.687 21 O -0.439 6.439 22 C -0.163 4.163 23 C 0.177 3.823 24 O -0.317 6.317 25 C -0.031 4.031 26 C -0.218 4.218 27 C -0.031 4.031 28 O -0.329 6.329 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.036 0.964 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.242 0.758 45 H 0.134 0.866 46 H 0.145 0.855 47 H 0.054 0.946 48 H 0.065 0.935 49 H 0.132 0.868 50 H 0.131 0.869 51 H 0.102 0.898 52 H 0.071 0.929 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.488 3.878 -18.029 19.240 hybrid contribution 0.241 0.374 1.764 1.819 sum 5.728 4.253 -16.265 17.761 Atomic orbital electron populations 1.21941 0.94165 1.02651 1.01495 1.21337 0.96468 0.99475 0.94015 0.92308 1.21436 1.00178 0.96201 0.96126 1.21557 1.01312 0.94511 0.97695 1.21531 1.00930 0.99267 0.93297 1.21747 1.01732 0.92849 0.99015 1.20378 0.79202 0.96286 0.93617 1.21157 0.94950 0.95883 0.86352 1.42288 1.59913 1.33428 1.01439 1.19484 1.24036 1.07844 0.85903 0.92291 1.25347 1.00884 0.98918 1.00740 1.69765 1.38642 1.23866 1.28922 0.85285 0.76894 0.77808 0.80653 1.21210 1.21825 1.20549 1.45775 1.06700 1.08459 1.74508 1.20245 0.89499 0.83899 0.75050 1.90622 1.70578 1.32346 1.50350 1.21436 0.92395 0.95534 1.06985 1.22594 0.80580 0.93221 0.85891 1.88118 1.79557 1.26816 1.37229 1.22870 0.94081 0.82476 1.03632 1.22740 0.96525 1.03730 0.98840 1.22967 1.00466 0.82701 0.96976 1.88032 1.22326 1.30367 1.92168 0.94182 0.91416 0.90880 0.91472 0.92808 0.91094 0.90460 0.90383 0.91662 0.92880 0.90236 0.96562 0.96404 0.78908 0.94017 0.75797 0.86621 0.85466 0.94570 0.93539 0.86827 0.86929 0.89800 0.92894 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.79 8.15 71.98 0.59 -3.20 16 2 C -0.09 -2.74 2.10 -10.80 -0.02 -2.76 16 3 H 0.06 2.14 6.28 -2.39 -0.01 2.12 16 4 C -0.10 -2.34 5.29 30.60 0.16 -2.18 16 5 C -0.11 -2.12 5.65 30.59 0.17 -1.94 16 6 C -0.11 -2.35 5.75 30.60 0.18 -2.18 16 7 C -0.12 -3.32 4.40 30.60 0.13 -3.19 16 8 C 0.19 6.33 0.09 3.61 0.00 6.34 16 9 C 0.14 6.36 4.27 86.38 0.37 6.73 16 10 N -0.73 -37.81 5.18 -343.45 -1.78 -39.59 16 11 C -0.24 -14.05 9.99 84.03 0.84 -13.21 16 12 H 0.06 3.47 7.83 -2.91 -0.02 3.44 16 13 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 14 N -0.96 -58.26 13.06 21.65 0.28 -57.98 16 15 Si 0.96 47.58 29.55 68.60 2.03 49.61 16 16 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 17 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 19 N -0.70 -22.52 3.57 -422.93 -1.51 -24.03 16 20 C 0.53 19.04 7.12 87.66 0.62 19.66 16 21 O -0.56 -24.24 11.72 10.76 0.13 -24.11 16 22 C -0.12 -3.82 5.78 29.85 0.17 -3.64 16 23 C 0.27 8.88 2.80 71.98 0.20 9.08 16 24 O -0.40 -12.57 9.77 -120.75 -1.18 -13.75 16 25 C 0.05 1.07 6.96 72.07 0.50 1.57 16 26 C -0.18 -3.20 6.35 30.77 0.20 -3.01 16 27 C 0.04 0.95 6.96 72.07 0.50 1.45 16 28 O -0.41 -11.90 10.54 -126.22 -1.33 -13.23 16 29 H 0.04 1.19 6.56 -2.39 -0.02 1.18 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.68 4.81 -2.39 -0.01 1.67 16 32 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 33 H 0.05 1.31 7.61 -2.39 -0.02 1.29 16 34 H 0.07 1.26 6.43 -2.39 -0.02 1.24 16 35 H 0.08 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.06 1.29 6.79 -2.39 -0.02 1.28 16 38 H 0.05 1.81 7.11 -2.39 -0.02 1.79 16 39 H 0.08 2.24 6.43 -2.39 -0.02 2.23 16 40 H 0.02 0.83 6.25 -2.39 -0.01 0.81 16 41 H 0.02 0.81 6.74 -2.38 -0.02 0.79 16 42 H 0.38 20.01 6.47 -92.71 -0.60 19.41 16 43 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.41 11.00 7.20 -92.70 -0.67 10.33 16 45 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 46 H 0.13 3.19 8.14 -2.38 -0.02 3.17 16 47 H 0.04 1.38 7.95 -2.39 -0.02 1.37 16 48 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 51 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 53 H 0.12 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -73.59 392.35 1.37 -72.22 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -0.35 Total: 44.75 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: 5.08 Total: 6.11 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -3.01 Total: -121.60 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -2.38 Total: -51.09 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -73.59 1.37 -72.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267867523.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.262 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds