Wall clock time and date at job start Tue Mar 31 2020 23:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47113 * 2 1 4 4 C 1.52999 * 109.46962 * 240.00085 * 2 1 3 5 5 C 1.53001 * 109.46962 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.46961 * 60.00094 * 5 4 2 7 7 C 1.52994 * 109.47249 * 300.00092 * 6 5 4 8 8 C 1.52997 * 109.47483 * 59.99855 * 7 6 5 9 9 C 1.52994 * 109.47483 * 179.97438 * 8 7 6 10 10 N 1.46497 * 109.47223 * 294.33611 * 9 8 7 11 11 C 1.36942 * 120.00228 * 176.54459 * 10 9 8 12 12 H 1.08002 * 119.99509 * 359.97438 * 11 10 9 13 13 C 1.38809 * 120.00023 * 180.02562 * 11 10 9 14 14 N 1.31616 * 120.00236 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 119.99701 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47562 * 59.99916 * 15 13 11 17 17 H 1.48506 * 109.47211 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46960 * 299.99533 * 15 13 11 19 19 N 1.46506 * 109.46784 * 60.00054 * 8 7 6 20 20 C 1.34786 * 119.99719 * 171.20061 * 19 8 7 21 21 O 1.21282 * 119.99933 * 354.07352 * 20 19 8 22 22 C 1.50694 * 119.99695 * 174.07535 * 20 19 8 23 23 C 1.52997 * 109.47112 * 180.02562 * 22 20 19 24 24 O 1.42965 * 109.47295 * 184.99935 * 23 22 20 25 25 C 1.43093 * 113.77082 * 181.20389 * 24 23 22 26 26 C 1.53261 * 109.03428 * 57.91277 * 25 24 23 27 27 C 1.53287 * 108.83119 * 305.64096 * 26 25 24 28 28 O 1.42971 * 109.47328 * 64.99815 * 23 22 20 29 29 H 1.09003 * 109.46962 * 297.43918 * 1 2 3 30 30 H 1.09003 * 109.46784 * 57.43682 * 1 2 3 31 31 H 1.09003 * 109.47100 * 177.43665 * 1 2 3 32 32 H 1.08996 * 109.47581 * 300.00125 * 4 2 1 33 33 H 1.09001 * 109.47424 * 60.00385 * 4 2 1 34 34 H 1.09001 * 109.47143 * 179.97438 * 5 4 2 35 35 H 1.08994 * 109.47592 * 300.00440 * 5 4 2 36 36 H 1.09009 * 109.47146 * 59.99987 * 6 5 4 37 37 H 1.09003 * 109.47351 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47405 * 299.99783 * 7 6 5 39 39 H 1.09006 * 109.47080 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.46848 * 54.33662 * 9 8 7 41 41 H 1.08998 * 109.47297 * 174.33247 * 9 8 7 42 42 H 0.97000 * 119.99887 * 356.54791 * 10 9 8 43 43 H 0.96995 * 120.00316 * 180.02562 * 14 13 11 44 44 H 0.96995 * 120.00395 * 351.19731 * 19 8 7 45 45 H 1.09004 * 109.47236 * 59.99810 * 22 20 19 46 46 H 1.09003 * 109.47254 * 299.99692 * 22 20 19 47 47 H 1.09006 * 109.47121 * 305.00060 * 23 22 20 48 48 H 1.08997 * 109.56170 * 177.81297 * 25 24 23 49 49 H 1.09005 * 109.55720 * 298.02611 * 25 24 23 50 50 H 1.09004 * 109.56848 * 65.34123 * 26 25 24 51 51 H 1.08995 * 109.57806 * 185.71911 * 26 25 24 52 52 H 1.09002 * 109.46787 * 294.52024 * 27 26 25 53 53 H 1.09001 * 109.65177 * 174.30504 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7223 1.2495 8 6 2.0394 -0.7217 1.2492 9 6 1.5294 -0.0011 2.4988 10 7 1.9027 -0.7668 3.6906 11 6 1.6134 -0.2782 4.9368 12 1 1.1104 0.6718 5.0409 13 6 1.9675 -1.0035 6.0661 14 7 2.5810 -2.1611 5.9392 15 14 1.5722 -0.3373 7.7659 16 1 0.1038 -0.1604 7.8991 17 1 2.0515 -1.2935 8.7961 18 1 2.2477 0.9717 7.9538 19 7 1.5506 -2.1028 1.2489 20 6 0.2383 -2.3531 1.4271 21 8 -0.5213 -1.4462 1.6946 22 6 -0.2852 -3.7600 1.2942 23 6 -1.7949 -3.7680 1.5423 24 8 -2.2725 -5.1154 1.5315 25 6 -3.6853 -5.2282 1.7287 26 6 -4.4076 -4.4299 0.6379 27 6 -3.8757 -2.9923 0.6427 28 8 -2.4508 -3.0216 0.5143 29 1 -0.3633 0.4736 0.9121 30 1 -0.3633 0.5531 -0.8662 31 1 -0.3633 -1.0267 -0.0460 32 1 1.6767 -1.7489 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 3.9333 -1.2360 -2.1387 35 1 3.9338 0.3057 -1.2486 36 1 3.7157 -2.4711 0.0000 37 1 5.1694 -1.4443 0.0004 38 1 3.9332 0.3053 1.2499 39 1 3.9328 -1.2362 2.1395 40 1 1.9736 0.9930 2.5517 41 1 0.4442 0.0881 2.4493 42 1 2.3548 -1.6199 3.5971 43 1 2.8281 -2.6681 6.7283 44 1 2.1713 -2.8369 1.1203 45 1 0.2070 -4.4014 2.0252 46 1 -0.0806 -4.1304 0.2896 47 1 -2.0063 -3.3153 2.5111 48 1 -3.9795 -6.2760 1.6695 49 1 -3.9499 -4.8297 2.7082 50 1 -4.2173 -4.8850 -0.3341 51 1 -5.4791 -4.4254 0.8376 52 1 -4.1478 -2.5073 1.5802 53 1 -4.3060 -2.4394 -0.1924 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267867524.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:19:58 Heat of formation + Delta-G solvation = -131.141487 kcal Electronic energy + Delta-G solvation = -33165.259654 eV Core-core repulsion = 29036.610674 eV Total energy + Delta-G solvation = -4128.648980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.05681 -40.85678 -38.85980 -36.65396 -36.35423 -34.57997 -34.28152 -33.45855 -33.00354 -31.37332 -30.31023 -27.70770 -26.92608 -26.47492 -24.95963 -24.64087 -22.37515 -22.18095 -21.83438 -21.38181 -20.01206 -19.16285 -18.74482 -17.88696 -17.51670 -17.00864 -16.93230 -16.64028 -16.18121 -15.78920 -15.72066 -15.62530 -15.21424 -14.87875 -14.83173 -14.78927 -14.53452 -14.28556 -13.93635 -13.88539 -13.70072 -13.42119 -13.05222 -12.88680 -12.78844 -12.66445 -12.63573 -12.43466 -12.41284 -12.22157 -12.11564 -12.09509 -11.97814 -11.81360 -11.71243 -11.27766 -11.03080 -10.98730 -10.92494 -10.74313 -10.67787 -10.26488 -9.50949 -8.82676 -7.91701 -5.15552 1.43482 1.46137 1.52141 1.91505 2.10327 2.56714 2.66491 2.86426 3.41029 3.72827 3.77614 3.78647 3.79986 3.82674 3.88245 3.91762 4.16089 4.18437 4.24131 4.26696 4.41724 4.43256 4.44636 4.54207 4.58862 4.61268 4.64635 4.71332 4.76131 4.80330 4.83486 4.86640 4.96277 4.98519 5.07483 5.10386 5.19672 5.25648 5.28393 5.32888 5.41189 5.46377 5.48553 5.53238 5.60830 5.79782 5.83438 5.88133 6.16771 6.31688 6.81641 7.38459 7.55164 8.17007 8.44680 9.31357 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007635 B = 0.005119 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3666.623103 B = 5468.968625 C = 8067.196987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.102 4.102 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.114 4.114 8 C 0.191 3.809 9 C 0.134 3.866 10 N -0.726 5.726 11 C -0.236 4.236 12 H 0.059 0.941 13 C -0.070 4.070 14 N -0.964 5.964 15 Si 0.965 3.035 16 H -0.287 1.287 17 H -0.291 1.291 18 H -0.280 1.280 19 N -0.703 5.703 20 C 0.515 3.485 21 O -0.534 6.534 22 C -0.122 4.122 23 C 0.272 3.728 24 O -0.407 6.407 25 C 0.046 3.954 26 C -0.181 4.181 27 C 0.046 3.954 28 O -0.394 6.394 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.005 0.995 41 H 0.043 0.957 42 H 0.376 0.624 43 H 0.250 0.750 44 H 0.405 0.595 45 H 0.118 0.882 46 H 0.126 0.874 47 H 0.036 0.964 48 H 0.122 0.878 49 H 0.051 0.949 50 H 0.083 0.917 51 H 0.111 0.889 52 H 0.044 0.956 53 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.324 -5.309 -18.576 20.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.107 4.107 3 H 0.088 0.912 4 C -0.140 4.140 5 C -0.150 4.150 6 C -0.150 4.150 7 C -0.152 4.152 8 C 0.105 3.895 9 C 0.007 3.993 10 N -0.368 5.368 11 C -0.369 4.369 12 H 0.077 0.923 13 C -0.263 4.263 14 N -0.615 5.615 15 Si 0.795 3.205 16 H -0.214 1.214 17 H -0.217 1.217 18 H -0.206 1.206 19 N -0.356 5.356 20 C 0.301 3.699 21 O -0.412 6.412 22 C -0.162 4.162 23 C 0.176 3.824 24 O -0.328 6.328 25 C -0.030 4.030 26 C -0.218 4.218 27 C -0.030 4.030 28 O -0.314 6.314 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.022 0.978 41 H 0.061 0.939 42 H 0.209 0.791 43 H 0.059 0.941 44 H 0.242 0.758 45 H 0.136 0.864 46 H 0.144 0.856 47 H 0.054 0.946 48 H 0.140 0.860 49 H 0.070 0.930 50 H 0.102 0.898 51 H 0.129 0.871 52 H 0.062 0.938 53 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.711 -4.585 -18.459 20.169 hybrid contribution -0.192 0.032 1.824 1.834 sum -6.902 -4.553 -16.635 18.577 Atomic orbital electron populations 1.22280 0.94794 1.02822 0.99287 1.21443 0.95915 0.99078 0.94259 0.91162 1.21487 0.95977 1.00505 0.96005 1.21522 0.94755 1.00969 0.97757 1.21533 1.00888 0.99333 0.93237 1.21700 0.92522 1.01947 0.99030 1.20393 0.93921 0.81587 0.93628 1.21375 0.98818 0.92935 0.86184 1.42232 1.70603 1.23466 1.00548 1.19474 1.29786 1.02203 0.85396 0.92254 1.25351 1.02499 0.97672 1.00764 1.69765 1.47821 1.15168 1.28785 0.85340 0.77494 0.77271 0.80436 1.21355 1.21704 1.20612 1.45703 1.07634 1.08386 1.73919 1.20133 0.82686 0.90312 0.76721 1.90730 1.57975 1.46433 1.46044 1.21437 0.92268 0.95504 1.07016 1.22627 0.91508 0.78262 0.90008 1.88023 1.24587 1.27114 1.93105 1.22937 0.79290 1.03131 0.97653 1.22741 1.02487 0.95776 1.00822 1.22839 0.80191 0.97180 1.02761 1.88117 1.20232 1.72216 1.50872 0.94227 0.94492 0.91399 0.91972 0.91336 0.90191 0.91896 0.91295 0.90693 0.91151 0.93017 0.97753 0.93893 0.79087 0.94150 0.75815 0.86385 0.85567 0.94634 0.85962 0.93020 0.89808 0.87094 0.93753 0.86986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.37 7.29 71.98 0.52 -3.85 16 2 C -0.09 -2.46 2.07 -10.79 -0.02 -2.49 16 3 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 4 C -0.10 -2.20 5.05 30.59 0.15 -2.04 16 5 C -0.11 -2.06 5.92 30.60 0.18 -1.88 16 6 C -0.11 -2.34 5.75 30.59 0.18 -2.16 16 7 C -0.11 -3.34 4.70 30.59 0.14 -3.20 16 8 C 0.19 6.23 0.32 3.60 0.00 6.23 16 9 C 0.13 5.93 4.44 86.38 0.38 6.31 16 10 N -0.73 -38.14 5.13 -343.46 -1.76 -39.90 16 11 C -0.24 -13.95 9.99 84.03 0.84 -13.12 16 12 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 13 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 14 N -0.96 -59.34 13.06 21.65 0.28 -59.05 16 15 Si 0.96 48.14 29.55 68.60 2.03 50.17 16 16 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 17 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 18 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 19 N -0.70 -21.49 3.49 -422.92 -1.47 -22.97 16 20 C 0.51 17.58 5.75 87.65 0.50 18.09 16 21 O -0.53 -22.01 8.89 10.72 0.10 -21.91 16 22 C -0.12 -3.49 5.78 29.84 0.17 -3.32 16 23 C 0.27 8.41 2.80 71.98 0.20 8.61 16 24 O -0.41 -11.29 10.54 -126.22 -1.33 -12.62 16 25 C 0.05 0.93 6.96 72.07 0.50 1.43 16 26 C -0.18 -3.12 6.36 30.78 0.20 -2.92 16 27 C 0.05 1.07 6.96 72.08 0.50 1.57 16 28 O -0.39 -11.97 9.77 -120.76 -1.18 -13.15 16 29 H 0.04 1.53 5.54 -2.39 -0.01 1.52 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 2.33 4.79 -3.20 -0.02 2.32 16 32 H 0.06 1.35 7.60 -2.39 -0.02 1.33 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.07 1.31 6.70 -2.38 -0.02 1.30 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 39 H 0.05 1.82 7.30 -2.38 -0.02 1.80 16 40 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 41 H 0.04 2.12 4.27 -2.39 -0.01 2.11 16 42 H 0.38 20.26 6.60 -92.71 -0.61 19.65 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 44 H 0.41 10.38 7.07 -92.71 -0.66 9.72 16 45 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 46 H 0.13 2.91 8.14 -2.39 -0.02 2.89 16 47 H 0.04 1.32 7.95 -2.38 -0.02 1.30 16 48 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 49 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 50 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 51 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 52 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -73.20 391.64 1.22 -71.97 By element: Atomic # 1 Polarization: 44.26 SS G_CDS: -0.36 Total: 43.90 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 4.92 Total: 3.56 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -2.95 Total: -121.92 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -2.42 Total: -47.68 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -73.20 1.22 -71.97 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267867524.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.166 kcal (2) G-P(sol) polarization free energy of solvation -73.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds