Wall clock time and date at job start Tue Mar 31 2020 23:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46797 * 2 1 4 4 C 1.53000 * 109.46914 * 119.99692 * 2 1 3 5 5 C 1.52991 * 109.47386 * 60.00108 * 4 2 1 6 6 C 1.53002 * 109.47319 * 59.99791 * 5 4 2 7 7 C 1.53000 * 109.47062 * 300.00407 * 6 5 4 8 8 C 1.52993 * 109.47186 * 239.99467 * 2 1 3 9 9 C 1.53004 * 109.47318 * 60.00143 * 8 2 1 10 10 N 1.46493 * 109.47446 * 174.65242 * 9 8 2 11 11 C 1.36941 * 120.00111 * 184.97486 * 10 9 8 12 12 H 1.08005 * 119.99959 * 0.02562 * 11 10 9 13 13 C 1.38808 * 120.00182 * 179.97438 * 11 10 9 14 14 N 1.31619 * 119.99793 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99948 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47154 * 60.00434 * 15 13 11 17 17 H 1.48507 * 109.46816 * 180.02562 * 15 13 11 18 18 H 1.48492 * 109.47284 * 300.00245 * 15 13 11 19 19 N 1.46496 * 109.47274 * 179.97438 * 8 2 1 20 20 C 1.34775 * 120.00443 * 304.32644 * 19 8 2 21 21 O 1.21285 * 119.99763 * 354.58347 * 20 19 8 22 22 C 1.50693 * 120.00602 * 174.58340 * 20 19 8 23 23 C 1.53000 * 109.47417 * 179.97438 * 22 20 19 24 24 O 1.42964 * 109.47338 * 294.99921 * 23 22 20 25 25 C 1.43088 * 113.77010 * 181.20533 * 24 23 22 26 26 C 1.53260 * 108.94520 * 57.96855 * 25 24 23 27 27 C 1.53257 * 108.84364 * 305.47751 * 26 25 24 28 28 O 1.42967 * 109.47138 * 174.99455 * 23 22 20 29 29 H 1.09001 * 109.47031 * 299.99999 * 1 2 3 30 30 H 1.08994 * 109.46854 * 60.00459 * 1 2 3 31 31 H 1.09003 * 109.46601 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47164 * 180.02562 * 4 2 1 33 33 H 1.09000 * 109.47042 * 299.99784 * 4 2 1 34 34 H 1.09003 * 109.47551 * 180.02562 * 5 4 2 35 35 H 1.09004 * 109.47372 * 299.99724 * 5 4 2 36 36 H 1.08999 * 109.47492 * 180.02562 * 6 5 4 37 37 H 1.08995 * 109.46899 * 60.00285 * 6 5 4 38 38 H 1.09005 * 109.47106 * 299.99714 * 7 6 5 39 39 H 1.09000 * 109.47042 * 179.97438 * 7 6 5 40 40 H 1.09008 * 109.47051 * 294.65808 * 9 8 2 41 41 H 1.09000 * 109.47136 * 54.64736 * 9 8 2 42 42 H 0.96998 * 119.99847 * 4.98059 * 10 9 8 43 43 H 0.97005 * 119.99796 * 179.97438 * 14 13 11 44 44 H 0.97005 * 119.99918 * 124.31935 * 19 8 2 45 45 H 1.08999 * 109.46760 * 299.99880 * 22 20 19 46 46 H 1.09002 * 109.47429 * 59.99794 * 22 20 19 47 47 H 1.09004 * 109.46754 * 55.00289 * 23 22 20 48 48 H 1.09003 * 109.55886 * 298.13144 * 25 24 23 49 49 H 1.09005 * 109.64772 * 177.86551 * 25 24 23 50 50 H 1.09000 * 109.57451 * 185.66477 * 26 25 24 51 51 H 1.09002 * 109.57342 * 65.28350 * 26 25 24 52 52 H 1.08996 * 109.55685 * 294.68317 * 27 26 25 53 53 H 1.09002 * 109.64313 * 174.41677 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5301 -2.1636 1.2494 6 6 2.0401 -2.8850 0.0002 7 6 1.5301 -2.1638 -1.2491 8 6 2.0401 -0.7213 -1.2491 9 6 1.5301 -0.0002 -2.4985 10 7 2.1207 -0.6125 -3.6911 11 6 1.8897 -0.0680 -4.9262 12 1 1.2725 0.8132 -5.0209 13 6 2.4497 -0.6479 -6.0561 14 7 3.2024 -1.7214 -5.9406 15 14 2.1352 0.0954 -7.7408 16 1 2.6388 1.4922 -7.7674 17 1 2.8398 -0.7051 -8.7743 18 1 0.6768 0.0897 -8.0199 19 7 3.5050 -0.7208 -1.2494 20 6 4.1786 0.4433 -1.1618 21 8 3.5759 1.4956 -1.1818 22 6 5.6805 0.4375 -1.0391 23 6 6.1912 1.8775 -0.9578 24 8 5.9149 2.5513 -2.1880 25 6 6.3808 3.9038 -2.2220 26 6 7.8925 3.9158 -1.9703 27 6 8.1820 3.1767 -0.6593 28 8 7.6017 1.8704 -0.7245 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -0.2073 2.1392 34 1 1.8930 -2.6773 2.1397 35 1 0.4400 -2.1637 1.2494 36 1 1.6764 -3.9125 0.0000 37 1 3.1300 -2.8850 0.0003 38 1 0.4401 -2.1638 -1.2491 39 1 1.8938 -2.6775 -2.1390 40 1 0.4442 -0.0823 -2.5476 41 1 1.8131 1.0514 -2.4520 42 1 2.6753 -1.4038 -3.6059 43 1 3.5934 -2.1269 -6.7303 44 1 3.9903 -1.5584 -1.3126 45 1 5.9692 -0.1023 -0.1372 46 1 6.1144 -0.0528 -1.9106 47 1 5.6903 2.3949 -0.1395 48 1 5.8774 4.4828 -1.4477 49 1 6.1699 4.3397 -3.1986 50 1 8.2419 4.9455 -1.8940 51 1 8.4036 3.4148 -2.7925 52 1 7.7468 3.7281 0.1741 53 1 9.2593 3.0909 -0.5172 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267867525.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:02 Heat of formation + Delta-G solvation = -152.231189 kcal Electronic energy + Delta-G solvation = -32851.826267 eV Core-core repulsion = 28722.262769 eV Total energy + Delta-G solvation = -4129.563498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.88689 -40.90032 -39.08865 -36.68162 -36.44920 -34.71007 -34.21055 -33.31253 -32.74879 -31.41381 -30.52791 -27.77427 -26.93936 -26.55654 -24.85708 -24.64417 -23.04244 -22.24780 -21.94502 -21.27760 -19.45696 -18.97471 -18.72924 -17.88612 -17.52898 -16.96753 -16.92723 -16.64928 -16.25396 -15.93375 -15.86347 -15.71406 -15.25840 -15.09683 -14.66511 -14.59391 -14.50376 -14.29134 -13.96708 -13.87798 -13.78566 -13.55181 -13.12217 -13.00632 -12.87675 -12.81583 -12.64079 -12.44991 -12.41339 -12.20396 -12.13371 -12.11166 -12.06648 -11.92123 -11.80296 -11.20773 -11.10332 -11.02734 -10.98575 -10.87198 -10.67499 -10.30810 -9.72880 -8.90922 -7.93686 -5.18640 1.42290 1.45821 1.51530 1.81585 2.08127 2.55545 2.69794 2.84063 3.39315 3.63293 3.75596 3.76525 3.78209 3.83907 3.86002 3.92228 4.13238 4.15456 4.25988 4.27795 4.39113 4.40208 4.41934 4.48652 4.50191 4.58405 4.60560 4.71931 4.74501 4.80439 4.82244 4.84233 4.89498 4.94190 5.01151 5.09004 5.16628 5.19572 5.21672 5.29242 5.31543 5.43567 5.47984 5.48488 5.55722 5.64321 5.85603 5.86398 6.19515 6.29482 6.74599 7.36488 7.45792 8.12913 8.40810 9.29263 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.006913 B = 0.005408 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4049.267792 B = 5175.793973 C = 8211.626453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.063 0.937 4 C -0.102 4.102 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.116 4.116 8 C 0.191 3.809 9 C 0.146 3.854 10 N -0.727 5.727 11 C -0.241 4.241 12 H 0.058 0.942 13 C -0.068 4.068 14 N -0.963 5.963 15 Si 0.965 3.035 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.278 1.278 19 N -0.702 5.702 20 C 0.523 3.477 21 O -0.561 6.561 22 C -0.126 4.126 23 C 0.269 3.731 24 O -0.411 6.411 25 C 0.046 3.954 26 C -0.185 4.185 27 C 0.051 3.949 28 O -0.408 6.408 29 H 0.068 0.932 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.016 0.984 41 H 0.012 0.988 42 H 0.377 0.623 43 H 0.251 0.749 44 H 0.405 0.595 45 H 0.147 0.853 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.114 0.886 51 H 0.070 0.930 52 H 0.068 0.932 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.057 3.327 19.785 20.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 H 0.081 0.919 4 C -0.140 4.140 5 C -0.151 4.151 6 C -0.149 4.149 7 C -0.154 4.154 8 C 0.105 3.895 9 C 0.018 3.982 10 N -0.370 5.370 11 C -0.373 4.373 12 H 0.076 0.924 13 C -0.261 4.261 14 N -0.614 5.614 15 Si 0.795 3.205 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.204 1.204 19 N -0.354 5.354 20 C 0.310 3.690 21 O -0.439 6.439 22 C -0.165 4.165 23 C 0.173 3.827 24 O -0.332 6.332 25 C -0.030 4.030 26 C -0.223 4.223 27 C -0.025 4.025 28 O -0.329 6.329 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.241 0.759 45 H 0.165 0.835 46 H 0.118 0.882 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.112 0.888 50 H 0.133 0.867 51 H 0.089 0.911 52 H 0.086 0.914 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.552 3.929 19.541 20.691 hybrid contribution 0.235 0.380 -1.642 1.701 sum 5.787 4.309 17.899 19.299 Atomic orbital electron populations 1.21938 0.94191 1.02627 1.01493 1.21349 0.96543 0.99748 0.93847 0.91854 1.21451 1.00344 0.96136 0.96032 1.21551 1.01263 0.94612 0.97648 1.21523 1.01047 0.99134 0.93242 1.21748 1.01672 0.92904 0.99054 1.20378 0.79284 0.96243 0.93589 1.21164 0.94790 0.95625 0.86588 1.42263 1.60129 1.33146 1.01468 1.19458 1.24195 1.07683 0.85971 0.92354 1.25370 1.00889 0.98916 1.00879 1.69766 1.38938 1.23686 1.28975 0.85335 0.77665 0.77265 0.80257 1.21456 1.21516 1.20374 1.45794 1.06688 1.08646 1.74230 1.20342 0.89594 0.83787 0.75274 1.90631 1.70635 1.32172 1.50494 1.21499 0.91952 0.95912 1.07176 1.22800 0.80780 0.93043 0.86038 1.88251 1.79726 1.26734 1.38483 1.22820 0.94435 0.82589 1.03198 1.22767 0.96121 1.03883 0.99482 1.22930 1.00580 0.82564 0.96390 1.88018 1.22606 1.30380 1.91917 0.91257 0.94331 0.90955 0.92465 0.91212 0.90345 0.91237 0.90568 0.91509 0.90330 0.93085 0.96596 0.97046 0.79024 0.94058 0.75891 0.83542 0.88236 0.92130 0.92256 0.88830 0.86722 0.91134 0.91416 0.85901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 8.15 71.98 0.59 -3.15 16 2 C -0.10 -2.72 1.97 -10.79 -0.02 -2.74 16 3 H 0.06 2.21 6.05 -2.39 -0.01 2.20 16 4 C -0.10 -2.19 5.29 30.59 0.16 -2.03 16 5 C -0.11 -2.02 5.65 30.59 0.17 -1.85 16 6 C -0.11 -2.30 5.75 30.60 0.18 -2.13 16 7 C -0.12 -3.35 4.37 30.59 0.13 -3.22 16 8 C 0.19 6.34 0.09 3.60 0.00 6.34 16 9 C 0.15 6.58 4.42 86.38 0.38 6.96 16 10 N -0.73 -38.94 5.18 -343.45 -1.78 -40.72 16 11 C -0.24 -14.50 9.99 84.03 0.84 -13.66 16 12 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 13 C -0.07 -4.09 5.50 84.86 0.47 -3.63 16 14 N -0.96 -59.98 13.06 21.65 0.28 -59.70 16 15 Si 0.97 48.85 29.55 68.60 2.03 50.88 16 16 H -0.29 -14.46 7.11 99.48 0.71 -13.76 16 17 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 18 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 19 N -0.70 -22.42 3.48 -422.94 -1.47 -23.89 16 20 C 0.52 18.35 7.04 87.66 0.62 18.97 16 21 O -0.56 -23.77 11.72 10.72 0.13 -23.64 16 22 C -0.13 -3.62 5.78 29.85 0.17 -3.45 16 23 C 0.27 8.16 2.80 71.98 0.20 8.36 16 24 O -0.41 -15.17 9.77 -120.76 -1.18 -16.35 16 25 C 0.05 1.25 6.96 72.07 0.50 1.75 16 26 C -0.18 -3.68 6.35 30.77 0.20 -3.49 16 27 C 0.05 0.97 6.96 72.07 0.50 1.47 16 28 O -0.41 -10.83 10.54 -126.22 -1.33 -12.16 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.15 6.55 -2.39 -0.02 1.13 16 31 H 0.07 1.65 4.81 -2.39 -0.01 1.64 16 32 H 0.06 1.25 7.54 -2.39 -0.02 1.23 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.20 6.43 -2.38 -0.02 1.18 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.29 6.95 -2.39 -0.02 1.28 16 38 H 0.08 2.24 6.43 -2.38 -0.02 2.22 16 39 H 0.05 1.76 7.10 -2.39 -0.02 1.75 16 40 H 0.02 0.74 6.73 -2.38 -0.02 0.72 16 41 H 0.01 0.60 6.46 -2.39 -0.02 0.58 16 42 H 0.38 20.54 6.46 -92.71 -0.60 19.94 16 43 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 44 H 0.41 11.26 7.48 -92.70 -0.69 10.56 16 45 H 0.15 2.96 8.14 -2.39 -0.02 2.94 16 46 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 47 H 0.06 1.81 7.95 -2.39 -0.02 1.79 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 50 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 52 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 53 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -77.59 392.48 1.39 -76.20 By element: Atomic # 1 Polarization: 45.24 SS G_CDS: -0.37 Total: 44.87 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.09 Total: 4.50 kcal Atomic # 7 Polarization: -121.34 SS G_CDS: -2.97 Total: -124.31 kcal Atomic # 8 Polarization: -49.76 SS G_CDS: -2.38 Total: -52.15 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 2.03 Total: 50.88 kcal Total: -77.59 1.39 -76.20 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267867525.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.030 kcal (2) G-P(sol) polarization free energy of solvation -77.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds