Wall clock time and date at job start Tue Mar 31 2020 23:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42907 * 113.99474 * 2 1 4 4 C 1.52991 * 109.47020 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47372 * 65.00163 * 4 3 2 6 6 C 1.36939 * 120.00134 * 264.41705 * 5 4 3 7 7 H 1.07996 * 120.00074 * 146.28861 * 6 5 4 8 8 C 1.38807 * 119.99737 * 326.29078 * 6 5 4 9 9 N 1.31616 * 120.00121 * 337.22557 * 8 6 5 10 10 Si 1.86803 * 120.00050 * 157.22619 * 8 6 5 11 11 H 1.48495 * 109.47081 * 89.99762 * 10 8 6 12 12 H 1.48500 * 109.47360 * 209.99833 * 10 8 6 13 13 H 1.48500 * 109.46905 * 330.00063 * 10 8 6 14 14 C 1.46503 * 120.00023 * 84.40763 * 5 4 3 15 15 C 1.53037 * 109.46204 * 240.00435 * 14 5 4 16 16 C 1.53187 * 109.31442 * 178.62746 * 15 14 5 17 17 N 1.46933 * 108.77417 * 54.63703 * 16 15 14 18 18 C 1.34770 * 120.62938 * 126.37189 * 17 16 15 19 19 O 1.21282 * 120.00611 * 359.97438 * 18 17 16 20 20 C 1.50707 * 119.99991 * 180.02562 * 18 17 16 21 21 H 1.09005 * 110.98542 * 62.74040 * 20 18 17 22 22 C 1.54951 * 111.12468 * 298.54546 * 20 18 17 23 23 O 1.43640 * 105.13473 * 205.58921 * 22 20 18 24 24 C 1.43244 * 109.97154 * 24.43270 * 23 22 20 25 25 H 1.09004 * 109.82360 * 238.77318 * 24 23 22 26 26 C 1.52992 * 109.83453 * 117.88726 * 24 23 22 27 27 C 1.54388 * 107.66346 * 358.32510 * 24 23 22 28 28 C 1.46927 * 118.73700 * 306.64197 * 17 16 15 29 29 C 1.52769 * 109.00546 * 53.31041 * 28 17 16 30 30 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47889 * 299.99702 * 1 2 3 32 32 H 1.08994 * 109.47116 * 60.00604 * 1 2 3 33 33 H 1.08999 * 109.46989 * 59.99873 * 3 2 1 34 34 H 1.08996 * 109.46854 * 299.99620 * 3 2 1 35 35 H 1.09001 * 109.47547 * 304.99763 * 4 3 2 36 36 H 1.09003 * 109.47379 * 185.00019 * 4 3 2 37 37 H 0.97010 * 120.00245 * 179.97438 * 9 8 6 38 38 H 1.08998 * 109.45587 * 359.97438 * 14 5 4 39 39 H 1.09004 * 109.49909 * 58.68155 * 15 14 5 40 40 H 1.08995 * 109.49829 * 298.58320 * 15 14 5 41 41 H 1.09002 * 109.58751 * 294.85571 * 16 15 14 42 42 H 1.09001 * 109.70899 * 174.49091 * 16 15 14 43 43 H 1.09000 * 110.30542 * 86.67653 * 22 20 18 44 44 H 1.09003 * 110.38942 * 324.55343 * 22 20 18 45 45 H 1.09006 * 109.47022 * 61.58751 * 26 24 23 46 46 H 1.08996 * 109.47479 * 181.58491 * 26 24 23 47 47 H 1.09002 * 109.47521 * 301.58973 * 26 24 23 48 48 H 1.08998 * 110.84432 * 96.79454 * 27 24 23 49 49 H 1.08994 * 110.84739 * 220.41108 * 27 24 23 50 50 H 1.08998 * 109.58879 * 173.14129 * 28 17 16 51 51 H 1.08997 * 109.58846 * 293.57063 * 28 17 16 52 52 H 1.08998 * 109.56147 * 185.55038 * 29 28 17 53 53 H 1.08993 * 109.38364 * 65.51702 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5353 1.1849 0.0006 5 7 3.9767 0.5643 -1.2509 6 6 4.2080 -0.7845 -1.3020 7 1 3.9992 -1.3343 -2.2078 8 6 4.7110 -1.4449 -0.1895 9 7 5.3755 -0.7757 0.7286 10 14 4.4449 -3.2837 0.0046 11 1 5.5697 -4.0164 -0.6303 12 1 4.3837 -3.6254 1.4484 13 1 3.1696 -3.6711 -0.6503 14 6 4.1703 1.3865 -2.4478 15 6 3.2422 0.8938 -3.5605 16 6 3.4226 1.7772 -4.7990 17 7 4.8458 1.7949 -5.1639 18 6 5.2383 1.4758 -6.4131 19 8 4.4139 1.1697 -7.2483 20 6 6.7019 1.4982 -6.7718 21 1 7.2588 0.7675 -6.1852 22 6 7.2964 2.9192 -6.6039 23 8 8.4157 2.9661 -7.5030 24 6 8.2349 2.0157 -8.5593 25 1 9.0634 1.3072 -8.5649 26 6 8.1637 2.7415 -9.9042 27 6 6.9094 1.2693 -8.2961 28 6 5.8332 2.1614 -4.1395 29 6 5.6253 1.2790 -2.9099 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5137 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8507 0.5688 0.8427 36 1 3.9783 2.1768 0.0902 37 1 5.7267 -1.2372 1.5062 38 1 3.9387 2.4260 -2.2156 39 1 2.2075 0.9487 -3.2222 40 1 3.4896 -0.1379 -3.8103 41 1 3.0898 2.7910 -4.5763 42 1 2.8383 1.3741 -5.6262 43 1 7.6292 3.0712 -5.5772 44 1 6.5592 3.6741 -6.8777 45 1 9.1009 3.2689 -10.0825 46 1 7.9981 2.0159 -10.7004 47 1 7.3416 3.4571 -9.8879 48 1 6.0948 1.7113 -8.8698 49 1 7.0111 0.2074 -8.5198 50 1 6.8392 2.0094 -4.5307 51 1 5.7010 3.2071 -3.8620 52 1 6.2867 1.6081 -2.1085 53 1 5.8504 0.2437 -3.1653 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269644560.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:24 Heat of formation + Delta-G solvation = -119.319623 kcal Electronic energy + Delta-G solvation = -31876.649089 eV Core-core repulsion = 27748.512743 eV Total energy + Delta-G solvation = -4128.136346 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.74552 -40.06119 -39.08559 -38.28264 -36.57648 -34.04486 -33.40840 -32.93295 -32.13819 -31.59191 -29.77832 -27.16984 -27.14492 -26.61614 -25.24110 -24.11097 -23.64554 -22.16573 -22.05097 -21.35016 -20.01698 -18.67886 -18.06895 -17.64766 -17.29454 -17.13683 -16.69304 -16.55527 -16.28254 -16.13885 -15.68384 -15.47340 -15.27464 -15.19699 -14.85119 -14.83193 -14.51300 -14.20303 -13.78902 -13.55196 -13.47500 -13.41406 -13.24763 -13.16096 -12.91357 -12.82020 -12.74740 -12.56002 -12.35351 -12.26289 -12.19376 -12.05810 -12.00164 -11.80229 -11.76090 -11.50782 -11.48287 -11.10692 -10.84024 -10.52963 -10.39703 -10.29335 -9.65691 -8.46503 -7.73056 -5.23105 1.43253 1.48199 1.50278 1.56790 1.95128 2.58165 2.78671 3.21773 3.22940 3.38365 3.54332 3.62632 3.80771 3.90374 4.00988 4.07945 4.15756 4.19812 4.25225 4.35058 4.42654 4.45391 4.46671 4.52028 4.59317 4.63943 4.67733 4.68885 4.71422 4.77601 4.82565 4.82922 4.84118 4.90030 4.91645 4.94217 4.98224 5.04304 5.15081 5.17504 5.20930 5.31943 5.46210 5.61817 5.68329 5.78085 5.88990 5.99159 6.38463 6.50562 6.69120 7.07891 7.29883 8.01887 8.47925 9.25013 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015325 B = 0.002966 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.700411 B = 9437.839431 C =10105.465908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.054 3.946 4 C 0.139 3.861 5 N -0.583 5.583 6 C -0.219 4.219 7 H 0.040 0.960 8 C -0.028 4.028 9 N -0.915 5.915 10 Si 0.933 3.067 11 H -0.290 1.290 12 H -0.296 1.296 13 H -0.285 1.285 14 C 0.173 3.827 15 C -0.125 4.125 16 C 0.121 3.879 17 N -0.602 5.602 18 C 0.524 3.476 19 O -0.582 6.582 20 C -0.146 4.146 21 H 0.123 0.877 22 C 0.066 3.934 23 O -0.390 6.390 24 C 0.072 3.928 25 H 0.095 0.905 26 C -0.160 4.160 27 C -0.128 4.128 28 C 0.109 3.891 29 C -0.127 4.127 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.246 0.754 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.033 0.967 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.067 0.933 46 H 0.081 0.919 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.096 0.904 52 H 0.064 0.936 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.266 10.742 -12.764 16.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.025 4.025 4 C 0.013 3.987 5 N -0.303 5.303 6 C -0.350 4.350 7 H 0.057 0.943 8 C -0.225 4.225 9 N -0.561 5.561 10 Si 0.764 3.236 11 H -0.217 1.217 12 H -0.222 1.222 13 H -0.211 1.211 14 C 0.066 3.934 15 C -0.165 4.165 16 C -0.002 4.002 17 N -0.333 5.333 18 C 0.313 3.687 19 O -0.462 6.462 20 C -0.168 4.168 21 H 0.141 0.859 22 C -0.010 4.010 23 O -0.310 6.310 24 C 0.015 3.985 25 H 0.113 0.887 26 C -0.217 4.217 27 C -0.166 4.166 28 C -0.014 4.014 29 C -0.167 4.167 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.089 0.911 36 H 0.071 0.929 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.052 0.948 41 H 0.107 0.893 42 H 0.092 0.908 43 H 0.132 0.868 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.071 0.929 48 H 0.096 0.904 49 H 0.111 0.889 50 H 0.120 0.880 51 H 0.114 0.886 52 H 0.082 0.918 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.192 10.508 -13.014 16.769 hybrid contribution -0.778 -1.510 0.632 1.812 sum 0.414 8.999 -12.381 15.312 Atomic orbital electron populations 1.22798 0.81679 1.02457 1.00048 1.88130 1.19507 1.29028 1.95195 1.23297 0.97018 0.83796 0.98395 1.21008 0.89288 0.96578 0.91846 1.43903 1.75928 1.03821 1.06599 1.18716 1.33607 0.84480 0.98160 0.94270 1.25295 0.98087 0.99471 0.99602 1.70052 1.37455 1.35795 1.12768 0.85812 0.77480 0.84025 0.76247 1.21735 1.22202 1.21119 1.20509 0.92539 0.93854 0.86477 1.22155 1.00299 0.98610 0.95404 1.21581 0.81155 1.00705 0.96731 1.48222 1.08330 1.66578 1.10186 1.20568 0.90925 0.75637 0.81561 1.90651 1.55579 1.50259 1.49739 1.23070 0.92610 1.01325 0.99753 0.85910 1.23562 0.88562 0.93217 0.95706 1.88432 1.42842 1.60998 1.38688 1.22911 0.97083 0.90370 0.88088 0.88710 1.22128 1.02613 1.01200 0.95767 1.23090 0.97749 1.02740 0.92975 1.22071 0.92316 0.99778 0.87186 1.22075 0.98810 0.99150 0.96626 0.90264 0.93485 0.93886 0.93675 0.94124 0.91068 0.92931 0.94497 0.91190 0.91925 0.94835 0.89291 0.90790 0.86789 0.91831 0.91443 0.90060 0.92898 0.90387 0.88922 0.87964 0.88572 0.91752 0.94361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.77 10.44 -148.98 -1.56 -18.32 16 3 C 0.05 1.99 6.28 71.98 0.45 2.44 16 4 C 0.14 6.05 5.57 86.38 0.48 6.53 16 5 N -0.58 -26.28 2.35 -677.90 -1.59 -27.87 16 6 C -0.22 -11.49 8.06 84.03 0.68 -10.82 16 7 H 0.04 2.18 6.87 -2.91 -0.02 2.16 16 8 C -0.03 -1.56 4.90 84.86 0.42 -1.14 16 9 N -0.91 -51.72 11.36 21.65 0.25 -51.47 16 10 Si 0.93 46.04 29.61 68.60 2.03 48.07 16 11 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 14 C 0.17 6.15 2.60 45.02 0.12 6.27 16 15 C -0.12 -4.25 5.30 30.67 0.16 -4.09 16 16 C 0.12 3.38 6.44 86.36 0.56 3.94 16 17 N -0.60 -15.97 2.98 -819.71 -2.44 -18.41 16 18 C 0.52 14.66 7.10 87.66 0.62 15.28 16 19 O -0.58 -20.30 15.21 -3.04 -0.05 -20.35 16 20 C -0.15 -3.14 2.50 -10.00 -0.02 -3.16 16 21 H 0.12 2.47 7.84 -2.38 -0.02 2.45 16 22 C 0.07 1.23 6.34 72.65 0.46 1.69 16 23 O -0.39 -8.17 11.02 -148.98 -1.64 -9.81 16 24 C 0.07 1.27 4.15 31.06 0.13 1.40 16 25 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 26 C -0.16 -2.39 9.44 71.98 0.68 -1.71 16 27 C -0.13 -2.54 5.66 31.94 0.18 -2.36 16 28 C 0.11 2.50 5.48 86.22 0.47 2.98 16 29 C -0.13 -4.19 5.29 30.53 0.16 -4.03 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.07 3.72 5.35 -2.39 -0.01 3.71 16 36 H 0.05 2.07 8.04 -2.39 -0.02 2.05 16 37 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 38 H 0.07 2.20 7.87 -2.39 -0.02 2.18 16 39 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.03 1.36 7.03 -2.39 -0.02 1.35 16 41 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.07 2.26 7.00 -2.39 -0.02 2.24 16 43 H 0.11 1.73 6.11 -2.39 -0.01 1.72 16 44 H 0.06 1.20 8.02 -2.39 -0.02 1.18 16 45 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 46 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.08 1.77 7.20 -2.39 -0.02 1.75 16 49 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 50 H 0.10 1.95 4.35 -2.39 -0.01 1.94 16 51 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 53 H 0.04 1.51 7.71 -2.39 -0.02 1.49 16 Total: -1.00 -67.72 406.08 2.67 -65.05 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.88 Total: 17.81 kcal Atomic # 6 Polarization: 8.51 SS G_CDS: 6.79 Total: 15.30 kcal Atomic # 7 Polarization: -93.97 SS G_CDS: -3.79 Total: -97.75 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -3.24 Total: -48.48 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -67.72 2.67 -65.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269644560.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.267 kcal (2) G-P(sol) polarization free energy of solvation -67.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds