Wall clock time and date at job start Tue Mar 31 2020 23:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42896 * 113.99933 * 2 1 4 4 C 1.53005 * 109.47168 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47029 * 65.00255 * 4 3 2 6 6 C 1.36939 * 119.99975 * 269.99865 * 5 4 3 7 7 H 1.08000 * 120.00053 * 139.55563 * 6 5 4 8 8 C 1.38815 * 119.99883 * 319.55653 * 6 5 4 9 9 N 1.31618 * 119.99523 * 158.03321 * 8 6 5 10 10 Si 1.86793 * 120.00117 * 338.03531 * 8 6 5 11 11 H 1.48506 * 109.47168 * 95.39694 * 10 8 6 12 12 H 1.48503 * 109.46925 * 215.39425 * 10 8 6 13 13 H 1.48503 * 109.47464 * 335.39515 * 10 8 6 14 14 C 1.46501 * 119.99957 * 90.00291 * 5 4 3 15 15 C 1.53042 * 109.45928 * 243.05460 * 14 5 4 16 16 C 1.53192 * 109.31323 * 178.62865 * 15 14 5 17 17 N 1.46925 * 108.77233 * 54.63383 * 16 15 14 18 18 C 1.34783 * 120.62965 * 126.37466 * 17 16 15 19 19 O 1.21282 * 119.99586 * 4.93227 * 18 17 16 20 20 C 1.50699 * 120.00264 * 184.93897 * 18 17 16 21 21 H 1.08994 * 110.80222 * 319.60285 * 20 18 17 22 22 C 1.54999 * 110.90564 * 83.22088 * 20 18 17 23 23 O 1.44383 * 103.63036 * 155.14640 * 22 20 18 24 24 C 1.43892 * 106.89678 * 320.16015 * 23 22 20 25 25 H 1.08998 * 109.72917 * 266.88451 * 24 23 22 26 26 C 1.53001 * 110.06990 * 145.85655 * 24 23 22 27 27 C 1.54103 * 107.37488 * 26.27188 * 24 23 22 28 28 C 1.46923 * 118.74314 * 306.64059 * 17 16 15 29 29 C 1.52761 * 109.00427 * 53.31017 * 28 17 16 30 30 H 1.09000 * 109.47606 * 59.99258 * 1 2 3 31 31 H 1.09002 * 109.46897 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46721 * 299.99702 * 1 2 3 33 33 H 1.09006 * 109.47455 * 60.00481 * 3 2 1 34 34 H 1.08997 * 109.47880 * 300.00213 * 3 2 1 35 35 H 1.09002 * 109.46898 * 304.99929 * 4 3 2 36 36 H 1.09003 * 109.46627 * 185.00455 * 4 3 2 37 37 H 0.97004 * 119.99992 * 180.02562 * 9 8 6 38 38 H 1.09005 * 109.46224 * 3.02746 * 14 5 4 39 39 H 1.08998 * 109.49797 * 58.67064 * 15 14 5 40 40 H 1.09008 * 109.52090 * 298.59685 * 15 14 5 41 41 H 1.08993 * 109.58670 * 294.84984 * 16 15 14 42 42 H 1.08997 * 109.70150 * 174.49186 * 16 15 14 43 43 H 1.09000 * 110.62382 * 273.72639 * 22 20 18 44 44 H 1.08997 * 110.61738 * 36.56825 * 22 20 18 45 45 H 1.09000 * 109.46835 * 301.94590 * 26 24 23 46 46 H 1.09000 * 109.47410 * 61.95255 * 26 24 23 47 47 H 1.09006 * 109.46609 * 181.95282 * 26 24 23 48 48 H 1.08998 * 110.48826 * 239.42114 * 27 24 23 49 49 H 1.09001 * 110.48126 * 116.77978 * 27 24 23 50 50 H 1.09001 * 109.59032 * 173.14674 * 28 17 16 51 51 H 1.08998 * 109.58661 * 293.57792 * 28 17 16 52 52 H 1.08999 * 109.55962 * 185.55165 * 29 28 17 53 53 H 1.09007 * 109.38302 * 65.52258 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.0968 -0.7969 -1.3369 7 1 3.7781 -1.3132 -2.2304 8 6 4.6292 -1.5134 -0.2739 9 7 4.3649 -2.7966 -0.1471 10 14 5.7205 -0.6565 0.9767 11 1 4.9019 -0.2360 2.1423 12 1 6.7827 -1.5906 1.4291 13 1 6.3444 0.5381 0.3532 14 6 4.2864 1.4008 -2.4147 15 6 3.3178 1.0720 -3.5532 16 6 3.6236 1.9721 -4.7544 17 7 5.0422 1.8240 -5.1072 18 6 5.4074 1.5058 -6.3650 19 8 4.5693 1.4267 -7.2381 20 6 6.8570 1.2482 -6.6864 21 1 7.5008 1.9574 -6.1663 22 6 7.2493 -0.2110 -6.3411 23 8 8.3725 -0.4758 -7.2088 24 6 8.0715 0.1292 -8.4791 25 1 7.5995 -0.6039 -9.1332 26 6 9.3538 0.6551 -9.1273 27 6 7.1012 1.2968 -8.2143 28 6 6.0549 2.0236 -4.0616 29 6 5.7220 1.1284 -2.8694 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6886 1.8464 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 3.8515 0.5682 0.8410 36 1 3.9785 2.1766 0.0890 37 1 4.7366 -3.2972 0.5959 38 1 4.1846 2.4517 -2.1435 39 1 2.2941 1.2439 -3.2209 40 1 3.4361 0.0275 -3.8417 41 1 3.4182 3.0105 -4.4946 42 1 3.0038 1.6778 -5.6013 43 1 7.5449 -0.2918 -5.2951 44 1 6.4265 -0.8916 -6.5599 45 1 9.8295 1.3740 -8.4603 46 1 10.0349 -0.1757 -9.3115 47 1 9.1102 1.1417 -10.0718 48 1 6.1668 1.1465 -8.7551 49 1 7.5587 2.2447 -8.4977 50 1 7.0386 1.7609 -4.4507 51 1 6.0516 3.0663 -3.7441 52 1 6.4095 1.3406 -2.0506 53 1 5.8184 0.0832 -3.1638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269644562.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:32 Heat of formation + Delta-G solvation = -118.920450 kcal Electronic energy + Delta-G solvation = -32078.160614 eV Core-core repulsion = 27950.041577 eV Total energy + Delta-G solvation = -4128.119036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.73004 -40.11007 -39.17473 -38.31213 -36.64109 -33.99387 -33.52816 -33.05502 -32.42496 -31.67931 -29.95588 -27.16845 -27.07171 -26.62963 -25.12188 -24.30127 -23.69982 -22.63861 -22.07750 -21.23979 -19.88868 -18.86246 -18.24512 -17.49897 -17.41767 -17.01298 -16.61887 -16.51189 -16.41168 -16.14446 -15.94057 -15.87220 -15.60813 -15.05602 -14.91570 -14.63372 -14.48107 -14.27674 -14.14037 -13.79779 -13.50694 -13.44836 -13.32480 -13.19914 -12.95696 -12.89572 -12.87826 -12.47156 -12.32709 -12.31152 -12.17738 -12.08873 -11.86866 -11.80749 -11.70147 -11.61887 -11.31791 -11.18125 -10.80905 -10.77408 -10.48412 -10.32722 -9.64857 -8.57127 -8.01872 -5.41274 1.38335 1.46215 1.47034 1.56999 1.95865 2.55658 2.80723 3.11917 3.17654 3.34923 3.47547 3.60073 3.69823 3.89502 4.01131 4.09080 4.10799 4.17226 4.23681 4.31890 4.36920 4.42371 4.45493 4.46857 4.56544 4.57887 4.59579 4.63510 4.67554 4.67740 4.73295 4.80788 4.81884 4.84554 4.86566 4.88616 4.94573 4.98380 5.09759 5.10962 5.11734 5.21810 5.30947 5.46633 5.60532 5.64003 5.83928 6.11109 6.35949 6.39208 6.61236 7.08500 7.17068 7.81038 8.20342 9.19000 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014474 B = 0.003309 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.974742 B = 8459.206385 C = 9479.276304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.400 6.400 3 C 0.047 3.953 4 C 0.125 3.875 5 N -0.602 5.602 6 C -0.211 4.211 7 H 0.023 0.977 8 C -0.017 4.017 9 N -0.957 5.957 10 Si 0.935 3.065 11 H -0.287 1.287 12 H -0.321 1.321 13 H -0.239 1.239 14 C 0.174 3.826 15 C -0.126 4.126 16 C 0.122 3.878 17 N -0.603 5.603 18 C 0.522 3.478 19 O -0.581 6.581 20 C -0.138 4.138 21 H 0.137 0.863 22 C 0.065 3.935 23 O -0.384 6.384 24 C 0.063 3.937 25 H 0.064 0.936 26 C -0.145 4.145 27 C -0.133 4.133 28 C 0.111 3.889 29 C -0.137 4.137 30 H 0.043 0.957 31 H 0.072 0.928 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.095 0.905 37 H 0.254 0.746 38 H 0.088 0.912 39 H 0.063 0.937 40 H 0.026 0.974 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.044 0.956 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.106 0.894 50 H 0.102 0.898 51 H 0.102 0.898 52 H 0.074 0.926 53 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.086 17.055 -10.297 20.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.032 4.032 4 C 0.000 4.000 5 N -0.324 5.324 6 C -0.341 4.341 7 H 0.040 0.960 8 C -0.212 4.212 9 N -0.602 5.602 10 Si 0.765 3.235 11 H -0.215 1.215 12 H -0.251 1.251 13 H -0.163 1.163 14 C 0.069 3.931 15 C -0.166 4.166 16 C 0.000 4.000 17 N -0.334 5.334 18 C 0.311 3.689 19 O -0.462 6.462 20 C -0.159 4.159 21 H 0.155 0.845 22 C -0.013 4.013 23 O -0.304 6.304 24 C 0.006 3.994 25 H 0.082 0.918 26 C -0.202 4.202 27 C -0.171 4.171 28 C -0.011 4.011 29 C -0.176 4.176 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.051 0.949 36 H 0.113 0.887 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.112 0.888 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.062 0.938 45 H 0.087 0.913 46 H 0.079 0.921 47 H 0.107 0.893 48 H 0.096 0.904 49 H 0.124 0.876 50 H 0.120 0.880 51 H 0.120 0.880 52 H 0.093 0.907 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.985 16.630 -10.608 20.346 hybrid contribution -0.484 -0.726 0.954 1.292 sum 4.501 15.905 -9.654 19.142 Atomic orbital electron populations 1.22762 0.81590 1.02229 1.00112 1.88225 1.19614 1.28800 1.95215 1.23297 0.96120 0.84267 0.99503 1.21522 0.91891 0.97646 0.88977 1.44184 1.76471 1.02306 1.09428 1.18091 1.32656 0.82028 1.01309 0.95980 1.25989 0.99725 0.95125 1.00354 1.70049 1.47025 1.10432 1.32714 0.85966 0.79107 0.78812 0.79590 1.21480 1.25060 1.16257 1.20589 0.92146 0.94253 0.86139 1.22175 1.00244 0.98355 0.95874 1.21570 0.81155 1.00417 0.96907 1.48233 1.08158 1.67962 1.09072 1.20598 0.91065 0.75359 0.81875 1.90639 1.54203 1.53932 1.47431 1.22900 0.93318 1.00072 0.99599 0.84536 1.23367 0.89065 0.92619 0.96226 1.88928 1.40419 1.77306 1.23739 1.22980 0.96984 0.93787 0.85673 0.91833 1.21923 0.95465 1.01655 1.01123 1.22977 1.00505 1.00480 0.93166 1.21962 0.91362 1.01093 0.86714 1.22161 0.98362 0.99552 0.97558 0.93817 0.90944 0.93088 0.92709 0.93052 0.94904 0.88706 0.93740 0.89365 0.91808 0.95539 0.88774 0.91213 0.87424 0.93775 0.91252 0.92086 0.89306 0.90447 0.87577 0.88020 0.88005 0.90742 0.94033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.95 11.01 113.37 1.25 2.20 16 2 O -0.40 -17.14 10.18 -148.98 -1.52 -18.66 16 3 C 0.05 1.61 6.28 71.98 0.45 2.06 16 4 C 0.12 4.70 4.91 86.38 0.42 5.12 16 5 N -0.60 -25.21 1.94 -677.87 -1.31 -26.53 16 6 C -0.21 -11.37 8.06 84.03 0.68 -10.69 16 7 H 0.02 1.41 7.19 -2.91 -0.02 1.39 16 8 C -0.02 -0.97 5.29 84.86 0.45 -0.52 16 9 N -0.96 -61.03 13.97 21.65 0.30 -60.72 16 10 Si 0.94 44.93 25.16 68.60 1.73 46.66 16 11 H -0.29 -13.56 6.69 99.48 0.67 -12.89 16 12 H -0.32 -16.15 7.11 99.48 0.71 -15.45 16 13 H -0.24 -10.12 7.11 99.48 0.71 -9.41 16 14 C 0.17 5.62 2.60 45.02 0.12 5.74 16 15 C -0.13 -4.17 5.35 30.67 0.16 -4.01 16 16 C 0.12 3.26 6.42 86.36 0.55 3.82 16 17 N -0.60 -15.26 2.98 -819.75 -2.44 -17.71 16 18 C 0.52 14.35 6.95 87.66 0.61 14.96 16 19 O -0.58 -20.16 14.94 -3.04 -0.05 -20.20 16 20 C -0.14 -2.94 2.48 -10.24 -0.03 -2.96 16 21 H 0.14 2.10 6.67 -2.39 -0.02 2.09 16 22 C 0.06 1.62 7.05 72.67 0.51 2.14 16 23 O -0.38 -9.82 11.21 -148.98 -1.67 -11.49 16 24 C 0.06 1.27 4.05 30.97 0.13 1.40 16 25 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 26 C -0.14 -2.07 9.37 71.98 0.67 -1.40 16 27 C -0.13 -2.62 6.15 31.58 0.19 -2.42 16 28 C 0.11 2.27 6.26 86.22 0.54 2.81 16 29 C -0.14 -4.07 5.24 30.53 0.16 -3.91 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.56 8.14 -2.38 -0.02 1.55 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.03 1.45 3.63 -2.39 -0.01 1.44 16 36 H 0.09 2.75 7.90 -2.39 -0.02 2.74 16 37 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 38 H 0.09 2.25 7.78 -2.38 -0.02 2.23 16 39 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.03 1.10 7.19 -2.38 -0.02 1.08 16 41 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.07 2.11 7.03 -2.39 -0.02 2.09 16 43 H 0.11 2.58 7.79 -2.39 -0.02 2.56 16 44 H 0.04 1.30 8.04 -2.39 -0.02 1.28 16 45 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 48 H 0.08 1.85 6.78 -2.39 -0.02 1.83 16 49 H 0.11 1.53 7.70 -2.39 -0.02 1.51 16 50 H 0.10 1.69 5.19 -2.39 -0.01 1.68 16 51 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 52 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 53 H 0.04 1.56 7.65 -2.38 -0.02 1.54 16 Total: -1.00 -76.91 403.44 2.75 -74.16 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: 0.84 Total: 20.18 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: 6.88 Total: 14.32 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -3.45 Total: -104.96 kcal Atomic # 8 Polarization: -47.12 SS G_CDS: -3.23 Total: -50.35 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.73 Total: 46.66 kcal Total: -76.91 2.75 -74.16 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269644562.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.765 kcal (2) G-P(sol) polarization free energy of solvation -76.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds