Wall clock time and date at job start Wed Apr 1 2020 00:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49432 * 2 1 4 4 C 1.52760 * 109.59240 * 240.04824 * 2 1 3 5 5 N 1.46925 * 109.00575 * 185.53609 * 4 2 1 6 6 C 1.34777 * 120.62614 * 233.57902 * 5 4 2 7 7 O 1.21283 * 120.00463 * 359.72727 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.44850 * 6 5 4 9 9 C 1.53004 * 109.47208 * 180.27843 * 8 6 5 10 10 O 1.42902 * 109.47178 * 179.97438 * 9 8 6 11 11 C 1.42903 * 113.99607 * 180.02562 * 10 9 8 12 12 C 1.53177 * 109.54147 * 269.55403 * 11 10 9 13 13 C 1.53092 * 109.16208 * 183.15696 * 12 11 10 14 14 O 1.42903 * 109.41616 * 57.61205 * 13 12 11 15 15 C 1.42906 * 114.09443 * 298.83798 * 14 13 12 16 16 C 1.53095 * 109.41363 * 61.16197 * 15 14 13 17 17 C 1.46927 * 118.74028 * 53.31181 * 5 4 2 18 18 C 1.53193 * 108.77386 * 306.63705 * 17 5 4 19 19 C 1.53043 * 109.49647 * 120.06122 * 2 1 3 20 20 H 1.08988 * 109.46264 * 301.37260 * 19 2 1 21 21 N 1.46503 * 109.45332 * 61.33505 * 19 2 1 22 22 C 1.36945 * 119.99440 * 205.06522 * 21 19 2 23 23 H 1.08002 * 119.99816 * 359.97438 * 22 21 19 24 24 C 1.38806 * 119.99779 * 179.97438 * 22 21 19 25 25 N 1.31614 * 120.00353 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99797 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47328 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.46994 * 120.00393 * 26 24 22 29 29 H 1.48499 * 109.47372 * 239.99870 * 26 24 22 30 30 H 1.09003 * 109.47253 * 299.93601 * 1 2 3 31 31 H 1.09007 * 109.47198 * 59.93505 * 1 2 3 32 32 H 1.08999 * 109.47361 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.50779 * 65.65007 * 4 2 1 34 34 H 1.09004 * 109.43086 * 305.37497 * 4 2 1 35 35 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 36 36 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 37 37 H 1.09000 * 109.46887 * 300.00372 * 9 8 6 38 38 H 1.08998 * 109.46846 * 59.99549 * 9 8 6 39 39 H 1.08995 * 109.54494 * 29.82435 * 11 10 9 40 40 H 1.09000 * 109.52553 * 303.06060 * 12 11 10 41 41 H 1.09003 * 109.52277 * 63.24982 * 12 11 10 42 42 H 1.08998 * 109.48006 * 297.62276 * 13 12 11 43 43 H 1.09004 * 109.48073 * 177.59348 * 13 12 11 44 44 H 1.08998 * 109.48331 * 301.18000 * 15 14 13 45 45 H 1.08996 * 109.49359 * 181.14518 * 15 14 13 46 46 H 1.08998 * 109.52376 * 182.48829 * 16 15 14 47 47 H 1.09000 * 109.52236 * 62.29526 * 16 15 14 48 48 H 1.08997 * 109.58480 * 66.42812 * 17 5 4 49 49 H 1.08999 * 109.58607 * 186.70866 * 17 5 4 50 50 H 1.08996 * 109.49520 * 174.58628 * 18 17 5 51 51 H 1.09000 * 109.49888 * 294.65354 * 18 17 5 52 52 H 0.96993 * 120.01057 * 25.06207 * 21 19 2 53 53 H 0.97001 * 120.00337 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0422 -0.7185 -1.2470 5 7 3.5053 -0.8282 -1.1689 6 6 4.2818 -0.3844 -2.1771 7 8 3.7739 0.1066 -3.1629 8 6 5.7816 -0.4927 -2.0767 9 6 6.4204 0.0853 -3.3412 10 8 7.8426 -0.0168 -3.2458 11 6 8.5398 0.4983 -4.3819 12 6 8.7478 -0.6214 -5.4063 13 6 9.5634 -0.0803 -6.5835 14 8 10.8083 0.4315 -6.1035 15 6 10.6768 1.5125 -5.1782 16 6 9.9060 1.0354 -3.9445 17 6 4.1059 -1.4254 0.0317 18 6 3.5708 -0.6939 1.2667 19 6 2.0407 -0.7227 1.2486 20 1 1.6576 -0.2242 2.1389 21 7 1.5789 -2.1129 1.2309 22 6 1.4474 -2.8056 2.4049 23 1 1.6845 -2.3271 3.3437 24 6 1.0094 -4.1226 2.3883 25 7 0.7199 -4.7055 1.2443 26 14 0.8307 -5.0677 3.9896 27 1 1.2155 -4.1931 5.1263 28 1 -0.5804 -5.5004 4.1542 29 1 1.7141 -6.2610 3.9614 30 1 -0.3634 0.5128 0.8906 31 1 -0.3634 0.5149 -0.8895 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7652 -0.1496 -2.1345 34 1 1.6032 -1.7150 -1.2974 35 1 6.1288 0.0650 -1.2068 36 1 6.0642 -1.5402 -1.9732 37 1 6.0732 -0.4723 -4.2111 38 1 6.1378 1.1329 -3.4447 39 1 7.9587 1.3030 -4.8323 40 1 9.2853 -1.4468 -4.9396 41 1 7.7798 -0.9720 -5.7644 42 1 9.0072 0.7181 -7.0746 43 1 9.7511 -0.8840 -7.2956 44 1 10.1351 2.3318 -5.6508 45 1 11.6665 1.8565 -4.8777 46 1 9.7662 1.8697 -3.2571 47 1 10.4669 0.2435 -3.4482 48 1 3.8386 -2.4807 0.0876 49 1 5.1903 -1.3251 -0.0138 50 1 3.9334 -1.1883 2.1678 51 1 3.9159 0.3400 1.2550 52 1 1.3663 -2.5428 0.3879 53 1 0.4142 -5.6260 1.2327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271450543.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:45 Heat of formation + Delta-G solvation = -147.495810 kcal Electronic energy + Delta-G solvation = -30557.860431 eV Core-core repulsion = 26428.502274 eV Total energy + Delta-G solvation = -4129.358157 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.43025 -40.57781 -39.27571 -38.38943 -35.87209 -34.61730 -33.94224 -33.00456 -32.11515 -31.91643 -30.90593 -27.81607 -26.66636 -25.51500 -25.22494 -24.66620 -23.96521 -23.04067 -21.45147 -20.70452 -19.57918 -19.22477 -18.54930 -17.68224 -17.30964 -16.97259 -16.86658 -16.76602 -16.52716 -16.00033 -15.86716 -15.79353 -15.53684 -15.14708 -14.92419 -14.75153 -14.64656 -14.29602 -14.14105 -14.06184 -13.60350 -13.37574 -13.13550 -12.97613 -12.93409 -12.86941 -12.72004 -12.55778 -12.38179 -12.33448 -12.10464 -12.04900 -11.96006 -11.88323 -11.78768 -11.57468 -11.36640 -11.15048 -10.96339 -10.79181 -10.67835 -10.50904 -9.60918 -8.91487 -7.88429 -5.14369 1.48911 1.50594 1.55668 1.58893 1.85518 2.59646 2.61059 2.94643 3.45611 3.56895 3.71975 3.73016 3.85071 3.88542 3.96381 4.00654 4.02327 4.06889 4.10740 4.12952 4.25485 4.31125 4.36112 4.41240 4.46751 4.51907 4.61413 4.66732 4.69124 4.72415 4.74237 4.77294 4.77732 4.84519 4.86465 4.98522 5.03761 5.04885 5.11318 5.14764 5.19350 5.23431 5.30716 5.31728 5.48835 5.61273 5.64935 6.16676 6.21296 6.33725 6.43614 7.09044 7.41213 8.17859 8.40911 9.35028 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018443 B = 0.002045 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.820322 B =13690.396096 C =14340.821421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.600 5.600 6 C 0.517 3.483 7 O -0.587 6.587 8 C -0.131 4.131 9 C 0.085 3.915 10 O -0.391 6.391 11 C 0.083 3.917 12 C -0.178 4.178 13 C 0.063 3.937 14 O -0.403 6.403 15 C 0.061 3.939 16 C -0.150 4.150 17 C 0.117 3.883 18 C -0.142 4.142 19 C 0.170 3.830 20 H 0.048 0.952 21 N -0.725 5.725 22 C -0.223 4.223 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.963 3.037 27 H -0.266 1.266 28 H -0.301 1.301 29 H -0.299 1.299 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.122 0.878 36 H 0.110 0.890 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.107 0.893 50 H 0.068 0.932 51 H 0.078 0.922 52 H 0.373 0.627 53 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.417 14.875 -11.094 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.118 4.118 3 H 0.105 0.895 4 C 0.001 3.999 5 N -0.331 5.331 6 C 0.307 3.693 7 O -0.468 6.468 8 C -0.170 4.170 9 C 0.008 3.992 10 O -0.310 6.310 11 C 0.025 3.975 12 C -0.216 4.216 13 C -0.014 4.014 14 O -0.322 6.322 15 C -0.015 4.015 16 C -0.187 4.187 17 C -0.005 4.005 18 C -0.183 4.183 19 C 0.061 3.939 20 H 0.066 0.934 21 N -0.366 5.366 22 C -0.355 4.355 23 H 0.094 0.906 24 C -0.267 4.267 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.191 1.191 28 H -0.229 1.229 29 H -0.227 1.227 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.125 0.875 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.109 0.891 47 H 0.089 0.911 48 H 0.070 0.930 49 H 0.125 0.875 50 H 0.086 0.914 51 H 0.096 0.904 52 H 0.206 0.794 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 17.421 14.948 -11.291 25.581 hybrid contribution -1.149 -1.245 0.573 1.789 sum 16.272 13.702 -10.717 23.820 Atomic orbital electron populations 1.21605 0.94157 1.01448 1.01773 1.21545 0.96529 0.99394 0.94305 0.89525 1.21393 0.79503 1.00134 0.98910 1.48146 1.06761 1.59555 1.18630 1.20821 0.90060 0.76698 0.81766 1.90650 1.76599 1.47291 1.32301 1.21462 0.89359 1.05389 1.00825 1.22048 0.80194 1.00145 0.96779 1.87848 1.17778 1.83582 1.41835 1.22264 0.93585 0.95188 0.86423 1.22716 1.01666 0.99627 0.97593 1.22649 0.84629 0.99206 0.94876 1.87921 1.30218 1.51953 1.62073 1.22737 1.02112 0.88664 0.87978 1.22293 0.94373 1.02418 0.99657 1.21723 0.98487 0.97006 0.83266 1.22395 0.98150 1.00369 0.97361 1.20471 0.92514 0.85109 0.95761 0.93428 1.42603 1.79136 1.09287 1.05563 1.19608 1.34397 0.93786 0.87724 0.90596 1.25385 1.03746 0.98518 0.99067 1.69805 1.54046 1.12798 1.25439 0.85216 0.76324 0.78614 0.80469 1.19063 1.22929 1.22658 0.92162 0.91741 0.94243 0.89886 0.93362 0.86023 0.87160 0.93400 0.92629 0.91262 0.91183 0.90533 0.91864 0.87502 0.91732 0.86756 0.89131 0.91077 0.92973 0.87471 0.91375 0.90365 0.79352 0.94446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 9.06 71.98 0.65 -3.44 16 2 C -0.10 -3.02 2.65 -10.86 -0.03 -3.05 16 3 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 4 C 0.12 4.08 5.40 86.22 0.47 4.55 16 5 N -0.60 -18.11 2.98 -819.73 -2.44 -20.55 16 6 C 0.52 15.00 7.70 87.66 0.67 15.67 16 7 O -0.59 -20.57 15.40 -3.04 -0.05 -20.61 16 8 C -0.13 -2.82 4.42 29.85 0.13 -2.68 16 9 C 0.09 1.84 5.04 71.98 0.36 2.20 16 10 O -0.39 -8.12 10.00 -148.98 -1.49 -9.61 16 11 C 0.08 1.38 2.70 30.71 0.08 1.47 16 12 C -0.18 -2.84 5.76 30.68 0.18 -2.66 16 13 C 0.06 0.85 6.84 72.01 0.49 1.34 16 14 O -0.40 -6.65 10.77 -148.98 -1.60 -8.25 16 15 C 0.06 0.72 6.84 72.01 0.49 1.21 16 16 C -0.15 -2.07 5.79 30.69 0.18 -1.89 16 17 C 0.12 3.39 6.09 86.36 0.53 3.92 16 18 C -0.14 -4.20 5.78 30.67 0.18 -4.02 16 19 C 0.17 5.99 2.53 45.02 0.11 6.10 16 20 H 0.05 1.72 8.08 -2.39 -0.02 1.70 16 21 N -0.72 -32.95 3.64 -322.80 -1.18 -34.13 16 22 C -0.22 -11.46 9.93 84.03 0.83 -10.63 16 23 H 0.08 3.76 7.83 -2.91 -0.02 3.74 16 24 C -0.08 -4.12 5.50 84.86 0.47 -3.66 16 25 N -0.97 -57.43 13.06 21.65 0.28 -57.15 16 26 Si 0.96 44.91 29.55 68.60 2.03 46.94 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.04 1.47 7.54 -2.39 -0.02 1.45 16 33 H 0.08 2.75 7.01 -2.39 -0.02 2.74 16 34 H 0.05 1.86 6.64 -2.38 -0.02 1.84 16 35 H 0.12 2.15 7.69 -2.38 -0.02 2.13 16 36 H 0.11 2.23 7.94 -2.39 -0.02 2.21 16 37 H 0.05 1.11 7.95 -2.39 -0.02 1.09 16 38 H 0.06 1.21 8.04 -2.39 -0.02 1.19 16 39 H 0.07 1.05 7.79 -2.39 -0.02 1.03 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.08 1.21 8.00 -2.39 -0.02 1.19 16 42 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 48 H 0.05 1.89 7.74 -2.39 -0.02 1.88 16 49 H 0.11 2.34 5.93 -2.39 -0.01 2.33 16 50 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.37 18.69 5.94 -92.71 -0.55 18.14 16 53 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -65.71 408.86 1.68 -64.03 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: 0.33 Total: 34.90 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: 5.80 Total: 4.43 kcal Atomic # 7 Polarization: -108.49 SS G_CDS: -3.33 Total: -111.82 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -3.14 Total: -38.48 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.71 1.68 -64.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271450543.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.469 kcal (2) G-P(sol) polarization free energy of solvation -65.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds