Wall clock time and date at job start Wed Apr 1 2020 00:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52421 * 2 1 4 4 C 1.53623 * 109.43090 * 120.20164 * 2 1 3 5 5 N 1.46924 * 108.54649 * 174.72375 * 4 2 1 6 6 C 1.34777 * 120.63397 * 126.36773 * 5 4 2 7 7 O 1.21288 * 119.99376 * 359.72629 * 6 5 4 8 8 C 1.50692 * 120.00382 * 179.72318 * 6 5 4 9 9 C 1.53005 * 109.47253 * 180.02562 * 8 6 5 10 10 O 1.42898 * 109.47205 * 180.02562 * 9 8 6 11 11 C 1.42900 * 114.00210 * 180.02562 * 10 9 8 12 12 C 1.53177 * 109.54574 * 149.99994 * 11 10 9 13 13 C 1.53098 * 109.21356 * 176.87662 * 12 11 10 14 14 O 1.42899 * 109.41440 * 302.35638 * 13 12 11 15 15 C 1.42904 * 114.09711 * 61.16120 * 14 13 12 16 16 C 1.53100 * 109.41581 * 298.84173 * 15 14 13 17 17 C 1.46929 * 118.74053 * 306.10171 * 5 4 2 18 18 C 1.53194 * 108.77733 * 53.85042 * 17 5 4 19 19 C 1.53032 * 109.49832 * 239.91504 * 2 1 3 20 20 H 1.09001 * 109.46125 * 298.70012 * 19 2 1 21 21 N 1.46501 * 109.46405 * 58.66524 * 19 2 1 22 22 C 1.36933 * 120.00412 * 205.06843 * 21 19 2 23 23 H 1.08008 * 119.99420 * 359.97438 * 22 21 19 24 24 C 1.38809 * 120.00397 * 179.97438 * 22 21 19 25 25 N 1.31626 * 119.99602 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00228 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47038 * 90.00238 * 26 24 22 28 28 H 1.48504 * 109.47006 * 210.00131 * 26 24 22 29 29 H 1.48503 * 109.47173 * 330.00311 * 26 24 22 30 30 H 1.09004 * 109.47271 * 180.08413 * 1 2 3 31 31 H 1.09003 * 109.47320 * 300.08681 * 1 2 3 32 32 H 1.09004 * 109.47002 * 60.08324 * 1 2 3 33 33 H 1.09005 * 109.74296 * 54.98828 * 4 2 1 34 34 H 1.09000 * 109.66868 * 294.41639 * 4 2 1 35 35 H 1.08998 * 109.47481 * 60.00178 * 8 6 5 36 36 H 1.09000 * 109.47327 * 300.00511 * 8 6 5 37 37 H 1.09000 * 109.47243 * 60.00002 * 9 8 6 38 38 H 1.08998 * 109.47036 * 299.99909 * 9 8 6 39 39 H 1.09002 * 109.61649 * 29.77192 * 11 10 9 40 40 H 1.09002 * 109.52487 * 56.93873 * 12 11 10 41 41 H 1.09004 * 109.52023 * 296.81493 * 12 11 10 42 42 H 1.08999 * 109.47859 * 62.34349 * 13 12 11 43 43 H 1.08997 * 109.47984 * 182.36161 * 13 12 11 44 44 H 1.09002 * 109.48461 * 58.81736 * 15 14 13 45 45 H 1.08999 * 109.48109 * 178.84665 * 15 14 13 46 46 H 1.08992 * 109.52355 * 177.51674 * 16 15 14 47 47 H 1.08999 * 109.51737 * 297.64019 * 16 15 14 48 48 H 1.08996 * 109.59089 * 173.64194 * 17 5 4 49 49 H 1.09001 * 109.58011 * 293.92790 * 17 5 4 50 50 H 1.09004 * 109.49205 * 65.31783 * 18 17 5 51 51 H 1.09000 * 109.49834 * 185.41711 * 18 17 5 52 52 H 0.96997 * 119.99771 * 25.06349 * 21 19 2 53 53 H 0.96998 * 119.99721 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0410 -0.7288 1.2521 5 7 3.5045 -0.8291 1.1697 6 6 4.2811 -0.3863 2.1784 7 8 3.7730 0.1052 3.1640 8 6 5.7804 -0.5018 2.0817 9 6 6.4189 0.0696 3.3493 10 8 7.8407 -0.0394 3.2574 11 6 8.5375 0.4681 4.3971 12 6 9.8476 -0.3038 4.5823 13 6 10.6243 0.2966 5.7571 14 8 10.8630 1.6836 5.5094 15 6 9.6742 2.4653 5.3753 16 6 8.8592 1.9520 4.1852 17 6 4.1053 -1.4266 -0.0306 18 6 3.5709 -0.6951 -1.2659 19 6 2.0408 -0.7231 -1.2482 20 1 1.6967 -1.7573 -1.2351 21 7 1.5266 -0.0531 -2.4453 22 6 1.3952 -0.7498 -3.6168 23 1 1.6711 -1.7932 -3.6584 24 6 0.9075 -0.1151 -4.7509 25 7 0.5718 1.1566 -4.7002 26 14 0.7290 -1.0653 -6.3492 27 1 -0.6228 -1.6768 -6.4131 28 1 0.9089 -0.1408 -7.4974 29 1 1.7588 -2.1336 -6.4076 30 1 -0.3634 -1.0277 0.0015 31 1 -0.3634 0.5152 0.8892 32 1 -0.3633 0.5126 -0.8908 33 1 1.6084 -1.7282 1.2987 34 1 1.7630 -0.1661 2.1432 35 1 6.1327 0.0559 1.2140 36 1 6.0580 -1.5506 1.9765 37 1 6.0667 -0.4885 4.2169 38 1 6.1413 1.1184 3.4549 39 1 7.9176 0.3530 5.2862 40 1 10.4457 -0.2295 3.6741 41 1 9.6272 -1.3512 4.7886 42 1 10.0427 0.1855 6.6722 43 1 11.5766 -0.2224 5.8664 44 1 9.0800 2.3825 6.2853 45 1 9.9421 3.5088 5.2096 46 1 7.9311 2.5182 4.1080 47 1 9.4369 2.0729 3.2689 48 1 5.1896 -1.3245 0.0139 49 1 3.8396 -2.4824 -0.0851 50 1 3.9159 0.3388 -1.2540 51 1 3.9335 -1.1899 -2.1669 52 1 1.2791 0.8840 -2.4080 53 1 0.2314 1.6003 -5.4928 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271450547.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:53 Heat of formation + Delta-G solvation = -151.173550 kcal Electronic energy + Delta-G solvation = -30147.711423 eV Core-core repulsion = 26018.193788 eV Total energy + Delta-G solvation = -4129.517636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.37899 -40.56634 -39.16926 -38.38583 -36.18186 -34.59914 -33.94050 -33.05770 -32.11514 -31.93332 -30.99107 -27.83296 -26.76921 -25.54723 -24.78101 -24.50243 -23.77595 -23.05791 -21.46481 -21.15302 -19.97249 -19.03967 -18.58038 -17.70871 -17.29098 -16.97090 -16.86796 -16.85638 -16.61921 -16.00839 -15.81041 -15.66704 -15.47058 -15.14835 -15.01087 -14.84983 -14.52798 -14.27155 -14.15817 -13.94905 -13.63796 -13.35904 -13.16179 -13.02293 -12.97024 -12.85710 -12.75030 -12.57484 -12.43941 -12.33507 -12.14260 -12.09655 -12.03221 -11.84322 -11.79355 -11.65715 -11.36894 -11.14891 -10.98680 -10.79391 -10.68064 -10.51066 -9.67752 -8.95896 -7.90790 -5.18258 1.48928 1.49640 1.54442 1.57806 1.84608 2.57880 2.60483 2.94437 3.42399 3.55907 3.71824 3.72419 3.79471 3.82926 3.96195 3.99647 4.02239 4.05181 4.09154 4.13254 4.25123 4.31231 4.35905 4.40111 4.46335 4.50787 4.57884 4.67541 4.68296 4.74074 4.76394 4.77464 4.80053 4.82673 4.83808 4.86053 4.99346 5.02659 5.03719 5.10915 5.19015 5.19371 5.32392 5.40895 5.51130 5.56705 5.64372 6.16496 6.21211 6.30578 6.38621 7.08423 7.37142 8.13709 8.36471 9.32737 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.001875 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.287870 B =14927.132795 C =15557.675562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.100 4.100 3 H 0.051 0.949 4 C 0.127 3.873 5 N -0.606 5.606 6 C 0.518 3.482 7 O -0.586 6.586 8 C -0.132 4.132 9 C 0.083 3.917 10 O -0.390 6.390 11 C 0.084 3.916 12 C -0.150 4.150 13 C 0.061 3.939 14 O -0.403 6.403 15 C 0.063 3.937 16 C -0.178 4.178 17 C 0.113 3.887 18 C -0.144 4.144 19 C 0.177 3.823 20 H 0.049 0.951 21 N -0.732 5.732 22 C -0.229 4.229 23 H 0.079 0.921 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.968 3.032 27 H -0.291 1.291 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.064 0.936 43 H 0.114 0.886 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.069 0.931 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.044 0.956 51 H 0.068 0.932 52 H 0.370 0.630 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.672 -5.060 22.257 28.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.120 4.120 3 H 0.070 0.930 4 C 0.004 3.996 5 N -0.338 5.338 6 C 0.308 3.692 7 O -0.467 6.467 8 C -0.172 4.172 9 C 0.006 3.994 10 O -0.310 6.310 11 C 0.026 3.974 12 C -0.187 4.187 13 C -0.015 4.015 14 O -0.322 6.322 15 C -0.014 4.014 16 C -0.216 4.216 17 C -0.009 4.009 18 C -0.185 4.185 19 C 0.069 3.931 20 H 0.067 0.933 21 N -0.371 5.371 22 C -0.361 4.361 23 H 0.097 0.903 24 C -0.271 4.271 25 N -0.623 5.623 26 Si 0.798 3.202 27 H -0.218 1.218 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.074 0.926 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.109 0.891 42 H 0.083 0.917 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.124 0.876 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.127 0.873 49 H 0.107 0.893 50 H 0.063 0.937 51 H 0.086 0.914 52 H 0.201 0.799 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 17.690 -4.977 22.460 29.020 hybrid contribution -1.079 0.421 -1.330 1.764 sum 16.610 -4.556 21.131 27.261 Atomic orbital electron populations 1.21581 0.94104 1.02024 1.01130 1.21682 0.96582 0.99015 0.94703 0.93037 1.21680 0.79144 1.01250 0.97563 1.48221 1.06946 1.60112 1.18476 1.20814 0.90024 0.76522 0.81876 1.90668 1.76551 1.46759 1.32711 1.21478 0.89418 1.05967 1.00302 1.22073 0.80186 0.99993 0.97143 1.87843 1.17883 1.83141 1.42135 1.22269 0.93651 0.92963 0.88505 1.22290 0.95009 1.00889 1.00547 1.22740 1.01660 0.81149 0.95982 1.87922 1.31419 1.20233 1.92628 1.22648 0.86162 0.96026 0.96543 1.22739 1.01497 0.96814 1.00583 1.21950 0.99304 0.97580 0.82091 1.22483 0.98206 1.00111 0.97657 1.20455 0.91901 0.95347 0.85401 0.93288 1.42602 1.76915 1.10820 1.06778 1.19603 1.33562 0.94414 0.88475 0.90339 1.25503 1.03308 0.96932 1.01348 1.69825 1.52117 1.11084 1.29228 0.85210 0.77819 0.77489 0.79682 1.21812 1.22827 1.19199 0.92242 0.91794 0.94180 0.89780 0.89841 0.87023 0.85742 0.92604 0.93567 0.91242 0.91089 0.89066 0.91733 0.86782 0.91861 0.87572 0.90564 0.91218 0.87252 0.89326 0.93670 0.91383 0.79857 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.16 9.03 71.98 0.65 -3.51 16 2 C -0.10 -3.18 2.47 -10.57 -0.03 -3.20 16 3 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 4 C 0.13 3.36 5.75 86.51 0.50 3.85 16 5 N -0.61 -14.88 2.97 -818.06 -2.43 -17.30 16 6 C 0.52 13.01 7.70 87.65 0.67 13.69 16 7 O -0.59 -18.68 15.39 -3.05 -0.05 -18.73 16 8 C -0.13 -2.42 4.42 29.85 0.13 -2.29 16 9 C 0.08 1.62 5.05 71.98 0.36 1.98 16 10 O -0.39 -7.49 10.00 -148.98 -1.49 -8.98 16 11 C 0.08 1.30 2.70 30.76 0.08 1.38 16 12 C -0.15 -1.91 5.79 30.69 0.18 -1.74 16 13 C 0.06 0.67 6.84 72.01 0.49 1.16 16 14 O -0.40 -6.43 10.77 -148.98 -1.60 -8.03 16 15 C 0.06 0.81 6.84 72.02 0.49 1.30 16 16 C -0.18 -2.70 5.77 30.73 0.18 -2.52 16 17 C 0.11 2.43 6.34 86.36 0.55 2.97 16 18 C -0.14 -4.41 5.66 30.67 0.17 -4.24 16 19 C 0.18 6.41 2.19 45.02 0.10 6.51 16 20 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 21 N -0.73 -35.02 4.41 -322.81 -1.42 -36.44 16 22 C -0.23 -12.08 9.93 84.03 0.83 -11.25 16 23 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 24 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 25 N -0.97 -58.80 13.06 21.65 0.28 -58.52 16 26 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 28 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 29 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.04 1.55 7.36 -2.38 -0.02 1.53 16 33 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.08 2.35 7.00 -2.39 -0.02 2.33 16 35 H 0.11 1.91 7.69 -2.39 -0.02 1.89 16 36 H 0.12 1.73 7.94 -2.39 -0.02 1.72 16 37 H 0.06 1.10 8.05 -2.39 -0.02 1.08 16 38 H 0.05 0.99 7.96 -2.39 -0.02 0.97 16 39 H 0.07 0.97 7.79 -2.39 -0.02 0.96 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.14 8.01 -2.39 -0.02 1.12 16 47 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 48 H 0.11 1.75 5.93 -2.39 -0.01 1.73 16 49 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 50 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 51 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.37 19.60 7.51 -92.71 -0.70 18.91 16 53 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 Total: -1.00 -68.58 412.89 1.33 -67.25 By element: Atomic # 1 Polarization: 33.12 SS G_CDS: 0.18 Total: 33.30 kcal Atomic # 6 Polarization: -5.70 SS G_CDS: 5.83 Total: 0.14 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -3.57 Total: -112.26 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -3.14 Total: -35.73 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.58 1.33 -67.25 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271450547.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.924 kcal (2) G-P(sol) polarization free energy of solvation -68.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds