Wall clock time and date at job start Tue Mar 31 2020 23:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.58833 * 2 1 4 4 C 1.53194 * 109.58665 * 239.56986 * 2 1 3 5 5 C 1.53040 * 109.31507 * 185.57768 * 4 2 1 6 6 H 1.08999 * 109.44486 * 301.35437 * 5 4 2 7 7 N 1.46499 * 109.45902 * 181.38533 * 5 4 2 8 8 C 1.34776 * 119.99744 * 154.92951 * 7 5 4 9 9 O 1.21286 * 120.00092 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99916 * 180.02562 * 8 7 5 11 11 C 1.53008 * 109.47154 * 180.02562 * 10 8 7 12 12 O 1.42901 * 109.47114 * 179.97438 * 11 10 8 13 13 C 1.42895 * 113.99967 * 179.97438 * 12 11 10 14 14 C 1.53177 * 109.54297 * 210.00309 * 13 12 11 15 15 C 1.53092 * 109.21409 * 183.12221 * 14 13 12 16 16 O 1.43032 * 109.34724 * 57.57485 * 15 14 13 17 17 C 1.42902 * 114.13180 * 298.88455 * 16 15 14 18 18 C 1.53087 * 109.41934 * 61.15721 * 17 16 15 19 19 C 1.53039 * 109.53667 * 61.36600 * 5 4 2 20 20 C 1.53194 * 109.31375 * 298.63644 * 19 5 4 21 21 N 1.46923 * 109.58759 * 120.28343 * 2 1 3 22 22 C 1.36936 * 120.63236 * 353.37085 * 21 2 1 23 23 H 1.08002 * 120.00209 * 29.04155 * 22 21 2 24 24 C 1.38817 * 120.00078 * 209.04166 * 22 21 2 25 25 N 1.31610 * 119.99811 * 15.00922 * 24 22 21 26 26 Si 1.86804 * 119.99754 * 195.01464 * 24 22 21 27 27 H 1.48495 * 109.47432 * 59.99777 * 26 24 22 28 28 H 1.48500 * 109.47073 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46823 * 299.99839 * 26 24 22 30 30 H 1.09005 * 109.46740 * 299.71921 * 1 2 3 31 31 H 1.08993 * 109.47157 * 59.71439 * 1 2 3 32 32 H 1.08997 * 109.47090 * 179.71946 * 1 2 3 33 33 H 1.09004 * 109.49535 * 65.62442 * 4 2 1 34 34 H 1.08996 * 109.49625 * 305.53116 * 4 2 1 35 35 H 0.97003 * 120.00088 * 334.93751 * 7 5 4 36 36 H 1.08997 * 109.47860 * 59.99965 * 10 8 7 37 37 H 1.09006 * 109.47110 * 300.00055 * 10 8 7 38 38 H 1.08997 * 109.46896 * 59.99683 * 11 10 8 39 39 H 1.08997 * 109.46944 * 299.99625 * 11 10 8 40 40 H 1.09006 * 109.54197 * 330.17661 * 13 12 11 41 41 H 1.08999 * 109.51956 * 303.05592 * 14 13 12 42 42 H 1.09003 * 109.52670 * 63.18380 * 14 13 12 43 43 H 1.09002 * 109.48087 * 177.62312 * 15 14 13 44 44 H 1.09007 * 109.48230 * 297.65305 * 15 14 13 45 45 H 1.09000 * 109.47678 * 301.17346 * 17 16 15 46 46 H 1.09003 * 109.48892 * 181.14973 * 17 16 15 47 47 H 1.09002 * 109.52529 * 182.48822 * 18 17 16 48 48 H 1.08999 * 109.57345 * 62.32291 * 18 17 16 49 49 H 1.08997 * 109.49802 * 58.58893 * 19 5 4 50 50 H 1.08997 * 109.49609 * 178.65511 * 19 5 4 51 51 H 1.09000 * 109.58679 * 174.42395 * 20 19 5 52 52 H 1.09004 * 109.58400 * 294.85170 * 20 19 5 53 53 H 0.97010 * 119.99953 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 -1.2445 5 6 3.5675 -0.8495 -1.1691 6 1 4.0059 0.1460 -1.0994 7 7 4.0651 -1.5189 -2.3735 8 6 5.3289 -1.3047 -2.7900 9 8 6.0543 -0.5582 -2.1674 10 6 5.8406 -1.9928 -4.0292 11 6 7.2931 -1.5812 -4.2781 12 8 7.7786 -2.2341 -5.4529 13 6 9.1335 -1.9159 -5.7769 14 6 9.3299 -1.9960 -7.2939 15 6 10.8006 -1.7304 -7.6262 16 8 11.6206 -2.6786 -6.9375 17 6 11.5141 -2.6179 -5.5137 18 6 10.0717 -2.9184 -5.0980 19 6 3.9569 -1.6657 0.0655 20 6 3.4651 -0.9453 1.3249 21 7 2.0226 -0.6980 1.1953 22 6 1.1538 -1.1099 2.1704 23 1 0.1360 -1.3648 1.9143 24 6 1.5813 -1.1998 3.4880 25 7 2.7046 -0.6213 3.8563 26 14 0.5622 -2.1422 4.7383 27 1 0.4324 -3.5568 4.3059 28 1 1.2306 -2.0883 6.0633 29 1 -0.7868 -1.5298 4.8397 30 1 -0.3633 0.5095 0.8925 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 -1.0276 -0.0050 33 1 1.7660 -0.1696 -2.1366 34 1 1.6030 -1.7270 -1.2891 35 1 3.4850 -2.1161 -2.8712 36 1 5.2292 -1.7039 -4.8841 37 1 5.7877 -3.0730 -3.8931 38 1 7.9043 -1.8705 -3.4233 39 1 7.3465 -0.5011 -4.4141 40 1 9.3637 -0.9078 -5.4321 41 1 9.0507 -2.9892 -7.6454 42 1 8.7054 -1.2478 -7.7821 43 1 10.9537 -1.8279 -8.7010 44 1 11.0682 -0.7219 -7.3108 45 1 11.7911 -1.6210 -5.1707 46 1 12.1821 -3.3545 -5.0673 47 1 9.9785 -2.8292 -4.0156 48 1 9.8067 -3.9303 -5.4043 49 1 3.4983 -2.6528 0.0086 50 1 5.0412 -1.7700 0.1056 51 1 3.6519 -1.5690 2.1991 52 1 3.9903 0.0038 1.4316 53 1 3.0031 -0.6838 4.7772 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274652314.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:41:34 Heat of formation + Delta-G solvation = -145.990784 kcal Electronic energy + Delta-G solvation = -30009.923144 eV Core-core repulsion = 25880.630250 eV Total energy + Delta-G solvation = -4129.292894 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.12319 -40.55090 -39.33860 -38.42579 -36.11357 -34.26261 -34.03522 -33.05205 -32.12737 -32.04611 -30.93056 -27.98871 -26.79699 -25.68913 -24.79349 -24.39179 -23.59781 -22.33357 -21.48365 -21.32083 -20.73742 -18.65177 -18.21854 -17.50426 -17.35737 -17.22321 -16.93576 -16.76245 -16.70814 -15.92221 -15.81956 -15.70215 -15.50219 -15.15791 -14.98397 -14.76499 -14.57861 -14.52733 -14.22265 -14.10515 -13.37799 -13.33063 -12.99788 -12.93349 -12.73640 -12.70685 -12.64691 -12.59606 -12.35575 -12.33769 -12.12078 -12.09505 -11.85163 -11.81235 -11.71974 -11.50268 -11.38142 -11.33053 -10.85365 -10.68919 -10.54503 -10.51955 -10.00311 -8.64702 -7.83179 -5.29652 1.47791 1.49891 1.56235 1.62534 1.96210 2.53028 2.72299 2.94009 3.33023 3.59095 3.70052 3.71898 3.76816 3.88558 3.95724 4.01659 4.03683 4.09242 4.16417 4.24466 4.27767 4.35543 4.39753 4.48585 4.57551 4.61612 4.67489 4.72624 4.74009 4.76169 4.78668 4.79310 4.84611 4.86197 4.96026 5.02760 5.07886 5.09904 5.11489 5.16599 5.18207 5.39526 5.49144 5.56047 5.58073 5.71655 5.73255 6.14499 6.19594 6.43350 6.59519 7.17469 7.28407 7.89546 8.42164 9.23960 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024497 B = 0.001775 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.719757 B =15773.003795 C =16514.310502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.158 3.842 3 H 0.010 0.990 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.054 0.946 7 N -0.709 5.709 8 C 0.512 3.488 9 O -0.590 6.590 10 C -0.126 4.126 11 C 0.080 3.920 12 O -0.388 6.388 13 C 0.082 3.918 14 C -0.148 4.148 15 C 0.060 3.940 16 O -0.402 6.402 17 C 0.062 3.938 18 C -0.177 4.177 19 C -0.130 4.130 20 C 0.182 3.818 21 N -0.603 5.603 22 C -0.248 4.248 23 H 0.081 0.919 24 C -0.059 4.059 25 N -0.942 5.942 26 Si 0.965 3.035 27 H -0.277 1.277 28 H -0.301 1.301 29 H -0.274 1.274 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.417 0.583 36 H 0.127 0.873 37 H 0.120 0.880 38 H 0.044 0.956 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.116 0.884 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.061 0.939 50 H 0.043 0.957 51 H 0.056 0.944 52 H -0.015 1.015 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.164 -4.230 -25.363 27.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.051 3.949 3 H 0.028 0.972 4 C -0.157 4.157 5 C 0.056 3.944 6 H 0.073 0.927 7 N -0.360 5.360 8 C 0.300 3.700 9 O -0.471 6.471 10 C -0.166 4.166 11 C 0.003 3.997 12 O -0.308 6.308 13 C 0.025 3.975 14 C -0.186 4.186 15 C -0.016 4.016 16 O -0.321 6.321 17 C -0.014 4.014 18 C -0.215 4.215 19 C -0.171 4.171 20 C 0.055 3.945 21 N -0.327 5.327 22 C -0.378 4.378 23 H 0.098 0.902 24 C -0.254 4.254 25 N -0.589 5.589 26 Si 0.794 3.206 27 H -0.203 1.203 28 H -0.228 1.228 29 H -0.199 1.199 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.075 0.925 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.254 0.746 36 H 0.145 0.855 37 H 0.138 0.862 38 H 0.063 0.937 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.134 0.866 44 H 0.080 0.920 45 H 0.079 0.921 46 H 0.125 0.875 47 H 0.093 0.907 48 H 0.091 0.909 49 H 0.080 0.920 50 H 0.062 0.938 51 H 0.074 0.926 52 H 0.003 0.997 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 10.709 -3.947 -24.985 27.468 hybrid contribution -0.424 -0.084 1.714 1.767 sum 10.285 -4.031 -23.271 25.760 Atomic orbital electron populations 1.21712 0.93851 1.01734 1.01123 1.20660 0.94757 0.92880 0.86568 0.97229 1.22177 0.92440 1.02284 0.98768 1.20643 0.94993 0.95143 0.83590 0.92729 1.46013 1.13519 1.48448 1.28000 1.21001 0.81683 0.81027 0.86296 1.90720 1.57372 1.39743 1.59227 1.21417 0.96222 1.03159 0.95786 1.22077 0.94085 0.96208 0.87312 1.87826 1.28187 1.70118 1.44636 1.22255 0.81491 0.97706 0.96060 1.22279 0.98344 1.04196 0.93792 1.22770 0.87861 0.92379 0.98581 1.87937 1.65746 1.59454 1.18996 1.22642 0.95368 1.02528 0.80885 1.22707 0.96391 1.00951 1.01491 1.22307 0.98928 0.99632 0.96202 1.20463 0.83682 0.95393 0.94921 1.44418 1.02591 1.65688 1.19953 1.19522 0.95333 1.36307 0.86625 0.90179 1.25888 0.99121 1.01270 0.99076 1.70191 1.25309 1.46629 1.16726 0.85371 0.78297 0.79067 0.77906 1.20315 1.22760 1.19943 0.94251 0.90403 0.92545 0.89148 0.90504 0.74591 0.85509 0.86214 0.93726 0.93123 0.91652 0.90792 0.89111 0.86614 0.91951 0.92137 0.87468 0.90702 0.90861 0.91980 0.93814 0.92592 0.99656 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.29 7.94 71.98 0.57 -3.72 16 2 C 0.16 6.16 3.50 44.98 0.16 6.32 16 3 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 4 C -0.12 -3.49 4.84 30.67 0.15 -3.34 16 5 C 0.16 5.31 2.42 45.02 0.11 5.42 16 6 H 0.05 2.13 7.58 -2.39 -0.02 2.11 16 7 N -0.71 -17.15 5.08 -442.41 -2.25 -19.40 16 8 C 0.51 13.41 7.79 87.66 0.68 14.09 16 9 O -0.59 -21.43 15.64 -3.05 -0.05 -21.47 16 10 C -0.13 -2.19 6.07 29.85 0.18 -2.01 16 11 C 0.08 1.63 5.04 71.98 0.36 1.99 16 12 O -0.39 -7.42 10.00 -148.98 -1.49 -8.91 16 13 C 0.08 1.32 2.70 30.71 0.08 1.41 16 14 C -0.15 -1.90 5.79 30.68 0.18 -1.73 16 15 C 0.06 0.68 6.85 72.01 0.49 1.18 16 16 O -0.40 -6.49 10.77 -148.98 -1.60 -8.10 16 17 C 0.06 0.84 6.84 72.01 0.49 1.33 16 18 C -0.18 -2.73 5.76 30.68 0.18 -2.56 16 19 C -0.13 -5.18 5.65 30.67 0.17 -5.00 16 20 C 0.18 9.15 5.29 86.36 0.46 9.61 16 21 N -0.60 -29.58 2.99 -675.21 -2.02 -31.60 16 22 C -0.25 -13.14 8.60 84.03 0.72 -12.42 16 23 H 0.08 4.01 6.21 -2.91 -0.02 4.00 16 24 C -0.06 -3.30 4.96 84.86 0.42 -2.88 16 25 N -0.94 -56.84 11.14 21.65 0.24 -56.60 16 26 Si 0.97 44.81 29.58 68.60 2.03 46.84 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 30 H 0.04 1.50 7.62 -2.38 -0.02 1.48 16 31 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.88 7.45 -2.39 -0.02 1.86 16 33 H 0.09 2.12 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.42 6.86 8.60 -92.71 -0.80 6.06 16 36 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.12 1.68 8.14 -2.38 -0.02 1.66 16 38 H 0.04 1.02 7.95 -2.39 -0.02 1.00 16 39 H 0.05 1.09 8.04 -2.39 -0.02 1.07 16 40 H 0.07 1.01 7.79 -2.38 -0.02 0.99 16 41 H 0.07 1.06 8.14 -2.39 -0.02 1.05 16 42 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 45 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.17 7.99 -2.39 -0.02 1.16 16 48 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 50 H 0.04 1.78 8.14 -2.39 -0.02 1.77 16 51 H 0.06 3.18 6.06 -2.39 -0.01 3.17 16 52 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 53 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 Total: -1.00 -72.34 410.43 0.35 -71.98 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.08 Total: 19.57 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.41 Total: 7.69 kcal Atomic # 7 Polarization: -103.57 SS G_CDS: -4.02 Total: -107.60 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -3.14 Total: -38.48 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.34 0.35 -71.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274652314.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.008 kcal (2) G-P(sol) polarization free energy of solvation -72.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds